View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11430_low_22 (Length: 237)

Name: NF11430_low_22
Description: NF11430
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11430_low_22
NF11430_low_22
[»] chr3 (5 HSPs)
chr3 (126-214)||(53492989-53493076)
chr3 (19-112)||(53492848-53492941)
chr3 (23-112)||(53500803-53500892)
chr3 (19-112)||(16072002-16072095)
chr3 (137-211)||(16072156-16072230)


Alignment Details
Target: chr3 (Bit Score: 81; Significance: 3e-38; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 126 - 214
Target Start/End: Original strand, 53492989 - 53493076
Alignment:
Q  126 atgtatgaagaaagcgtagtttcaccaaaaacaaaaacatcaccaattggaaataactagaaattttatttattttgcatcaactctat 214  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53492989 atgtatgaagaa-gcgtagtttcaccaaaaacaaaaacatcaccaattggaaataactagaaattttatttattttgcatcaactctat 53493076  T

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Target: chr3; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 19 - 112
Target Start/End: Original strand, 53492848 - 53492941
Alignment:
Q  19 catagggaagtagcagttctcaacattcattttatttatttctgaatcnnnnnnngcctgcacatttgtttgagatatgaaagcaactctcagc 112  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||       |||||||||||||||||||||||||||||||||||||||    
T  53492848 catagggaagtagcagttctcaacattcattttctttatttctgaatcaaaaaaagcctgcacatttgtttgagatatgaaagcaactctcagc 53492941  T

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Target: chr3; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 23 - 112
Target Start/End: Original strand, 53500803 - 53500892
Alignment:
Q  23 gggaagtagcagttctcaacattcattttatttatttctgaatcnnnnnnngcctgcacatttgtttgagatatgaaagcaactctcagc 112  Q
    ||||||||||||||||||||||||||||| ||||||||||||||       |||||||||||||||||| ||||||||||||||||||||    
T  53500803 gggaagtagcagttctcaacattcattttctttatttctgaatcaaaaaaagcctgcacatttgtttgaaatatgaaagcaactctcagc 53500892  T

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Target: chr3; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 19 - 112
Target Start/End: Original strand, 16072002 - 16072095
Alignment:
Q  19 catagggaagtagcagttctcaacattcattttatttatttctgaatcnnnnnnngcctgcacatttgtttgagatatgaaagcaactctcagc 112  Q
    |||||||||||||||| |||||||||||||||| ||||| |||| ||        |||||||||||||||||||||||||||||||||||||||    
T  16072002 catagggaagtagcagctctcaacattcattttctttatctctggattaaaaaaagcctgcacatttgtttgagatatgaaagcaactctcagc 16072095  T

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Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 137 - 211
Target Start/End: Original strand, 16072156 - 16072230
Alignment:
Q  137 aagcgtagtttcaccaaaaacaaaaacatcaccaattggaaataactagaaattttatttattttgcatcaactc 211  Q
    ||||||||||| ||||||||| |||||||||||| ||||||| ||  | |||||||||||||| |||||||||||    
T  16072156 aagcgtagttttaccaaaaactaaaacatcaccatttggaaagaatcataaattttatttattctgcatcaactc 16072230  T

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