View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11430_low_23 (Length: 237)
Name: NF11430_low_23
Description: NF11430
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11430_low_23 |
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Alignment Details
Target: chr7 (Bit Score: 207; Significance: 1e-113; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 6967798 - 6968020
Alignment:
| Q |
1 |
taaaactatgttgatatgagcattaagcattcaaaccacttaattacgcagttttccaagacgaaagtggtggagtatcagattccttccatgtaggttc |
100 |
Q |
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| T |
6967798 |
taaaactatgttgatatgagcattaagcattcaaaccacttaattacgcagttttccaagacgaaagtggtggagtgtcagattccttccatgtaggttc |
6967897 |
T |
|
| Q |
101 |
ctttccggttctgtcacccttaacaatatctgccaaggactcaatttctgccatttcttcttgtgttagtttaacagataaagcaccaatgttttgatta |
200 |
Q |
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|||||||||||||||||||| ||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6967898 |
ctttccggttctgtcaccctcaacaagatctgccaaggattcaatttctgccatttcttcttgtgttagtttaacagataaagcaccaatgttttgatta |
6967997 |
T |
|
| Q |
201 |
aagttctctattttggtggttcc |
223 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
6967998 |
aagttctctattttggtggttcc |
6968020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 15 - 223
Target Start/End: Original strand, 6920189 - 6920400
Alignment:
| Q |
15 |
tatgagcattaagcattcaaaccacttaattacgcagttttccaagacgaaagtggtggagtatcagattccttccatgtaggt---tcctttccggttc |
111 |
Q |
| |
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| T |
6920189 |
tatgagcattaagcaagaaaatcacttcattacacagctttccaagaagagagtggtggagtatcagaattcttccatgtacttatttcatccccatatc |
6920288 |
T |
|
| Q |
112 |
tgtcacccttaacaatatctgccaaggactcaatttctgccatttcttcttgtgttagtttaacagataaagcaccaatgttttgattaaagttctctat |
211 |
Q |
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| T |
6920289 |
taccacccttaacagcatctgctaaagactcaagttctaccatttcttcttgtgttagtttcacagatagagcaccgatgttttgattcaagttctcaat |
6920388 |
T |
|
| Q |
212 |
tttggtggttcc |
223 |
Q |
| |
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|||||||||||| |
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| T |
6920389 |
tttggtggttcc |
6920400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 15 - 223
Target Start/End: Complemental strand, 6958023 - 6957812
Alignment:
| Q |
15 |
tatgagcattaagcattcaaaccacttaattacgcagttttccaagacgaaagtggtggagtatcagattccttccatgtaggt---tcctttccggttc |
111 |
Q |
| |
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||||||||||||||| ||| ||||| ||||| ||| ||||||||| || ||||||||||||||||| | |||||||||| | || | || || |
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| T |
6958023 |
tatgagcattaagcaagaaaatcacttcattacacagctttccaagaagagagtggtggagtatcagaattcttccatgtacttatttcatccccatatc |
6957924 |
T |
|
| Q |
112 |
tgtcacccttaacaatatctgccaaggactcaatttctgccatttcttcttgtgttagtttaacagataaagcaccaatgttttgattaaagttctctat |
211 |
Q |
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| T |
6957923 |
taccacccttaacagcatctgctaaagactcaagttctaccatttcttcttgtgttagtttcacagatagagcaccgatgttttgattcaagttctcaat |
6957824 |
T |
|
| Q |
212 |
tttggtggttcc |
223 |
Q |
| |
|
|||||||||||| |
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|
| T |
6957823 |
tttggtggttcc |
6957812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 115 - 223
Target Start/End: Original strand, 6917576 - 6917684
Alignment:
| Q |
115 |
cacccttaacaatatctgccaaggactcaatttctgccatttcttcttgtgttagtttaacagataaagcaccaatgttttgattaaagttctctatttt |
214 |
Q |
| |
|
||||||||||| |||||| || ||||||| |||| |||||||||||||||||||||| ||||||| |||||| |||||||||||||||||||| ||||| |
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| T |
6917576 |
cacccttaacagaatctgctaaagactcaagttctaccatttcttcttgtgttagtttcacagatagagcaccgatgttttgattaaagttctcaatttt |
6917675 |
T |
|
| Q |
215 |
ggtggttcc |
223 |
Q |
| |
|
||||||||| |
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|
| T |
6917676 |
ggtggttcc |
6917684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 15 - 223
Target Start/End: Complemental strand, 6960626 - 6960416
Alignment:
| Q |
15 |
tatgagcattaagcattcaaaccacttaattacgcagttttccaagacgaaagtggtggagtatcagattccttccatgtaggttc--ctttccggt-tc |
111 |
Q |
| |
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||||||||||||||| |||| ||||||||||| ||| ||||||||| || ||||| |||||||||| | |||||||||| | ||| || | || |
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| T |
6960626 |
tatgagcattaagcaagcaaagcacttaattacacagctttccaagaagagagtggcagagtatcagaattcttccatgtacttatatcttccctatatc |
6960527 |
T |
|
| Q |
112 |
tgtcacccttaacaatatctgccaaggactcaatttctgccatttcttcttgtgttagtttaacagataaagcaccaatgttttgattaaagttctctat |
211 |
Q |
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| ||||||||||| |||||| || ||||||| |||||| ||| ||||| |||||||||| ||||| ||||| ||||||||||||||||||||||| || |
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| T |
6960526 |
taccacccttaacagcatctgctaaagactcaagttctgctatt-cttctggtgttagtttcacagacaaagctccaatgttttgattaaagttctcaat |
6960428 |
T |
|
| Q |
212 |
tttggtggttcc |
223 |
Q |
| |
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|||||||||||| |
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|
| T |
6960427 |
tttggtggttcc |
6960416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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