View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11430_low_4 (Length: 516)
Name: NF11430_low_4
Description: NF11430
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11430_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 249; Significance: 1e-138; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 233 - 497
Target Start/End: Complemental strand, 51855556 - 51855292
Alignment:
| Q |
233 |
gtactaattgtttgctctgcttctggatagcagattgaagaagcaaagctttttcgtgctcaaggtcaaaatgagatggctatcaaccttggaatgtaca |
332 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51855556 |
gtactaattgtttgctctgcttctggatagcagattgaagaagcaaagctttttcgtgctcaaggtcaaaatgagatggctatcaaccttggaatgtaca |
51855457 |
T |
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| Q |
333 |
tatcacaaaattatcaaagtaatgaagaggtttcagatgtatatcgcttgattgggaagtggctggcagagaccagatctagcaagttattggacagagt |
432 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | | |
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| T |
51855456 |
tatcacaaaattatcaaagtaatgaagaggtttcagatgtatatcgcttgattgggaagtggctggcagagatcagatctagcaagttattggacaaact |
51855357 |
T |
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| Q |
433 |
taattctgtttaatgtttcaataatggatgctcccttgtgatgcctgactcatttgagttcatgt |
497 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51855356 |
taattctgtttaatgtttaaataatggatgctcccttgtgatgcctgactcatttgagttcatgt |
51855292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 233 - 497
Target Start/End: Original strand, 35042925 - 35043189
Alignment:
| Q |
233 |
gtactaattgtttgctctgcttctggatagcagattgaagaagcaaagctttttcgtgctcaaggtcaaaatgagatggctatcaaccttggaatgtaca |
332 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35042925 |
gtactaattgtttgctctgcttctggatggcagattgaagaagcaaagctttttcgtgctcaaggtcaaaatgagatggctatcaaccttggaatgtaca |
35043024 |
T |
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| Q |
333 |
tatcacaaaattatcaaagtaatgaagaggtttcagatgtatatcgcttgattgggaagtggctggcagagaccagatctagcaagttattggacagagt |
432 |
Q |
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| T |
35043025 |
tatcacaaaattatcaaagtaatgaagaggtttcggatgtatatcgcttgattgggaagtggctggcagagaccagatctagcaagttattggacaaact |
35043124 |
T |
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| Q |
433 |
taattctgtttaatgtttcaataatggatgctcccttgtgatgcctgactcatttgagttcatgt |
497 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35043125 |
gaattctgtttaatgtttaaataatggatgctcccttgtgatgcctgactcatttgagttcatgt |
35043189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 51856080 - 51855844
Alignment:
| Q |
1 |
tgaggttgaccttgacgctgaggttttggacattacttgatgctgcttctagacaaaaacaggtttaattagttaatgtttgaatttgatctagttaatg |
100 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51856080 |
tgaggtggaccttgacgctgaggttttggacattacttgatgctgcttctagacaaaaacaggtttaattagttaatgtttgaatttgatctagttaatg |
51855981 |
T |
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| Q |
101 |
nnnnnnnnnaaatgtttgttcatgttgacttaactttacttgaatataaaatgttagaattatgttattggagaatagtctttggccctaaggctggtaa |
200 |
Q |
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| T |
51855980 |
ttttttttaaaatgtttgttcatgttgacttaactttacttgaatataaaatgttagaattatgttattggagaatagcctttggccctaaggctggtaa |
51855881 |
T |
|
| Q |
201 |
gggaagttcatctgccagatttgtgtatttgtgtact |
237 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
51855880 |
gggaagttcatctgccagatttgtgtatttgtgtact |
51855844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 184 - 237
Target Start/End: Original strand, 35042588 - 35042641
Alignment:
| Q |
184 |
ggccctaaggctggtaagggaagttcatctgccagatttgtgtatttgtgtact |
237 |
Q |
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|||||||||||||||| | ||||||||||||||||||||||||||||||||||| |
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| T |
35042588 |
ggccctaaggctggtaggagaagttcatctgccagatttgtgtatttgtgtact |
35042641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 197; Significance: 1e-107; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 8945266 - 8945031
Alignment:
| Q |
1 |
tgaggttgaccttgacgctgaggttttggacattacttgatgctgcttctagacaaaaacaggtttaattagttaatgtttgaatttgatctagttaatg |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8945266 |
tgaggttgaccttgacgctgaggttttggacattacttgatgctgcttctagacaaaaacaggtttaattagttaatgtttgaatttgatctagttaatg |
8945167 |
T |
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| Q |
101 |
nnnnnnnnnaaatgtttgttcatgttgacttaactttacttgaatataaaatgttagaattatgttattggagaatagtctttggccctaaggctggtaa |
200 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| |
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| T |
8945166 |
ttttttta-aaatgtttgttcatgttgacttaactttacttgaatataaaatgttagaattatgttattggagaatagcctttgcccctaaggctggtaa |
8945068 |
T |
|
| Q |
201 |
gggaagttcatctgccagatttgtgtatttgtgtact |
237 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |
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| T |
8945067 |
gggaagttcatctgccagatttgtgtatttgtgtact |
8945031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 346 - 497
Target Start/End: Complemental strand, 8944678 - 8944527
Alignment:
| Q |
346 |
tcaaagtaatgaagaggtttcagatgtatatcgcttgattgggaagtggctggcagagaccagatctagcaagttattggacagagttaattctgtttaa |
445 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | |||||||||||||| |
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| T |
8944678 |
tcaaagtaatgaagaggtttcagatgtatatcgcttgattgggaagtggctggcagagaccagatgtagcaagttattggacaaacttaattctgtttaa |
8944579 |
T |
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| Q |
446 |
tgtttcaataatggatgctcccttgtgatgcctgactcatttgagttcatgt |
497 |
Q |
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||||| |||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
8944578 |
tgtttaaataatggatgctcccctgtgatgcctgactcatttgagttcatgt |
8944527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 244 - 371
Target Start/End: Complemental strand, 1869644 - 1869515
Alignment:
| Q |
244 |
ttgctctgcttctggatagcagattgaagaagcaaagctttttcgtgctcaaggtcaaaatgagatggctatcaaccttggaatgtacatatcac--aaa |
341 |
Q |
| |
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|||||||| ||| |||| |||||||||||||||||| |||||| ||||||||||||||||||| ||||||||||||||| | ||||||||||||| || |
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| T |
1869644 |
ttgctctggttccggatggcagattgaagaagcaaaacttttttgtgctcaaggtcaaaatgaaatggctatcaaccttaggatgtacatatcaccaaat |
1869545 |
T |
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| Q |
342 |
attatcaaagtaatgaagaggtttcagatg |
371 |
Q |
| |
|
|||||||||||||||||||| |||||||| |
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| T |
1869544 |
attatcaaagtaatgaagagacttcagatg |
1869515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 233 - 302
Target Start/End: Complemental strand, 8944743 - 8944674
Alignment:
| Q |
233 |
gtactaattgtttgctctgcttctggatagcagattgaagaagcaaagctttttcgtgctcaaggtcaaa |
302 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8944743 |
gtactaattgtttgctctgcttctggatagcagattgaagaagcaaagctttttcgtgctcaaggtcaaa |
8944674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 114; Significance: 1e-57; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 368 - 497
Target Start/End: Original strand, 26887003 - 26887132
Alignment:
| Q |
368 |
gatgtatatcgcttgattgggaagtggctggcagagaccagatctagcaagttattggacagagttaattctgtttaatgtttcaataatggatgctccc |
467 |
Q |
| |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | ||||||||||||||||||| |||||||||||||||| |
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| T |
26887003 |
gatgtatatcgcttgattgggaagtggccggcagagaccagatctagcaagttattggacaaacttaattctgtttaatgtttaaataatggatgctccc |
26887102 |
T |
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| Q |
468 |
ttgtgatgcctgactcatttgagttcatgt |
497 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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| T |
26887103 |
ttgtgatgcctgactcatttgagttcatgt |
26887132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 8 - 66
Target Start/End: Complemental strand, 24269886 - 24269829
Alignment:
| Q |
8 |
gaccttgacgctgaggttttggacattacttgatgctgcttctagacaaaaacaggttt |
66 |
Q |
| |
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|||| ||| ||||||||||||||||| ||||||| ||||||||||||| |||||||||| |
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| T |
24269886 |
gaccctgatgctgaggttttggacat-acttgatactgcttctagacagaaacaggttt |
24269829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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