View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11430_low_8 (Length: 421)
Name: NF11430_low_8
Description: NF11430
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11430_low_8 |
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| [»] scaffold0596 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 215 - 367
Target Start/End: Complemental strand, 28801040 - 28800888
Alignment:
| Q |
215 |
ttccaacaccacttgtaataccaacacgatgctattttcaatcaactcatactccaataccacgaaagaactttaatattctccaccaaatcatctacct |
314 |
Q |
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| T |
28801040 |
ttccaacaccaatcataatacgaacatgatgctattttaagtttgctcatactccaataccaagctagaaccttgatattctccaccaaatcctctacct |
28800941 |
T |
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| Q |
315 |
cggccacaccattattaaatacaatgtcattccttcgcttccatatagcccaa |
367 |
Q |
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| T |
28800940 |
caaccacaccattataaaagataacctcattccgtctcttccaaataacccaa |
28800888 |
T |
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Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 259 - 390
Target Start/End: Complemental strand, 21019166 - 21019035
Alignment:
| Q |
259 |
actcatactccaataccacgaaagaactttaatattctccaccaaatcatctacctcggccacaccattattaaatacaatgtcattccttcgcttcc-a |
357 |
Q |
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| T |
21019166 |
actcaaactccaataccatgatagaactttaatattttccaccaaatcatctaagtcgacaacacca-tattgaacacaatatcattccttctcttccaa |
21019068 |
T |
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| Q |
358 |
tatagcccaagttgaagcattccaaatcaaccg |
390 |
Q |
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| T |
21019067 |
aatagcccaaaccgtcgcattccaaatcaaccg |
21019035 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 369 - 411
Target Start/End: Original strand, 2516808 - 2516850
Alignment:
| Q |
369 |
ttgaagcattccaaatcaaccgaaaaccattcttagtcttctt |
411 |
Q |
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| T |
2516808 |
ttgaagcattccaaatcaaccgaaaaccatttttagtcttctt |
2516850 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 274 - 316
Target Start/End: Complemental strand, 13854474 - 13854432
Alignment:
| Q |
274 |
ccacgaaagaactttaatattctccaccaaatcatctacctcg |
316 |
Q |
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| T |
13854474 |
ccacgacaaaactttaatcttctccaccaaatcatctacctcg |
13854432 |
T |
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Target: scaffold0596 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0596
Description:
Target: scaffold0596; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 203 - 276
Target Start/End: Original strand, 2926 - 2999
Alignment:
| Q |
203 |
cattcccgtggattccaacaccacttgtaataccaacacgatgctattttcaatcaactcatactccaatacca |
276 |
Q |
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| T |
2926 |
cattcctgtgggttccaacactacttgtaaaacaaacacgatgcaattttcaaccgactcatactccaaaacca |
2999 |
T |
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Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 214 - 311
Target Start/End: Complemental strand, 7859420 - 7859323
Alignment:
| Q |
214 |
attccaacaccacttgtaataccaacacgatgctattttcaatcaactcatactccaataccacgaaagaactttaatattctccaccaaatcatcta |
311 |
Q |
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| T |
7859420 |
attcgaacaccactcataatacaaacacgtcgctattatcagcttactcatactccaataccaagcaagaaccttgatattctccaccaaatcctcta |
7859323 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 199 - 387
Target Start/End: Complemental strand, 4282363 - 4282174
Alignment:
| Q |
199 |
taaacattcccgtggattccaacaccacttgtaataccaacacgatgctattttcaatca-actcatactccaataccacgaaagaactttaatattctc |
297 |
Q |
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| T |
4282363 |
taaacaatcccgagggttccaacaccactcataatacaaacatgtcgctatttttcagcttactcatactccaataccaagctagaacctttatattctc |
4282264 |
T |
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| Q |
298 |
caccaaatcatctacctcggccacaccattattaaatacaatgtcattccttcgcttccatatagcccaagttgaagcattccaaatcaa |
387 |
Q |
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| T |
4282263 |
gaccacatcctccatctctacaacaccattattaaagataacctcatttcttctcttccaaataacccaaatagaagcaagccaaatcaa |
4282174 |
T |
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