View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11431_high_1 (Length: 554)
Name: NF11431_high_1
Description: NF11431
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11431_high_1 |
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Alignment Details
Target: chr6 (Bit Score: 334; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 211 - 548
Target Start/End: Original strand, 22499153 - 22499490
Alignment:
| Q |
211 |
gtatgtcaacctattttccaaccatattatgttttacagacttccatttatttgatatgttttaaatattacattgtaaatagcaatttatatttatttt |
310 |
Q |
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| T |
22499153 |
gtatgtcaacctattttccaaccatattatgttttacagacttccatttatttgatatgttttaaatattacattgtaaatagcaatttatatttatttt |
22499252 |
T |
|
| Q |
311 |
tctttcttagaaaaaggagcattttacaaagctcattaggtttacatttctctctattaatttagacatgtttatttcagcattttaaaataacttcaat |
410 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22499253 |
tctttcttagaaaaaggaccattttacaaagctcattaggtttacatttctctctattaatttagacatgtttatttcagcattttaaaataacttcaat |
22499352 |
T |
|
| Q |
411 |
ataagttttatgatgtgcctttttgccaatccacattgaattaagtaaagttggtactctaacccaaaaaataaagaagcataacataaacaaagacaac |
510 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22499353 |
ataagttttatgatgtgcctttttgccaatccacattgaattaagtaaagttggtactctaacccaaaaaataaagaagcataacataaacaaagacaac |
22499452 |
T |
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| Q |
511 |
taaactgagtttaagcacattaacaaattagttctttc |
548 |
Q |
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| T |
22499453 |
taaactgagtttaagcacattaacaaattagttctttc |
22499490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 24 - 182
Target Start/End: Original strand, 22498966 - 22499124
Alignment:
| Q |
24 |
gtcgcaaaattctggaatttaggattttagttgggattttgctcgtaagaggtaatttttgtggtagtttgtttgtgagtcgaattttccattgatgaaa |
123 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| ||||||||||| |
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| T |
22498966 |
gtcgcaaaattgtggaatttaggattttagttgggattttgctcgtaacaggtaatttttgtggtagtttgtttgtgagttgaatttttcattgatgaaa |
22499065 |
T |
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| Q |
124 |
atgaattttaaaatataagagaaataaaatataagagatgtgatagttcagaagatatg |
182 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
22499066 |
atgaattttaaaatataagagaaataaaatataagagatctgatagttcagaagatatg |
22499124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 24 - 64
Target Start/End: Complemental strand, 20923766 - 20923726
Alignment:
| Q |
24 |
gtcgcaaaattctggaatttaggattttagttgggattttg |
64 |
Q |
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|||||||||||||||| |||||||||| ||| ||||||||| |
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| T |
20923766 |
gtcgcaaaattctggattttaggatttaagtcgggattttg |
20923726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 24 - 64
Target Start/End: Original strand, 18304892 - 18304932
Alignment:
| Q |
24 |
gtcgcaaaattctggaatttaggattttagttgggattttg |
64 |
Q |
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|||||||||| ||||| |||||||||| ||||||||||||| |
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| T |
18304892 |
gtcgcaaaatactggattttaggatttaagttgggattttg |
18304932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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