View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11431_low_2 (Length: 310)
Name: NF11431_low_2
Description: NF11431
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11431_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 18 - 297
Target Start/End: Original strand, 25741938 - 25742217
Alignment:
| Q |
18 |
acttccgtgtccttgtgttccaacagtgtaggctgagtccattagaccggaggccgcagaagaagctccggccaccggatatggactgaaatgaaacgtt |
117 |
Q |
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| T |
25741938 |
acttccgtgtccttgtgttccaacagtgtaggctgagtccattagaccggaggccgcagaagaagctccggccaccggatatggactgaaatgaaacgtt |
25742037 |
T |
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| Q |
118 |
ggggagtattggtggaatgagttttttgttttggtagcattggatgtattggtagggcttaccggcgactatgccgcagatggtggaggtgttgtggatg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25742038 |
ggggagtattggtggaatgagttttttgttttggtagcattggatgtattggtagggcttaccggcgactatgccgcagatggtggaggtgttgtggatg |
25742137 |
T |
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| Q |
218 |
atggcggtagtggtggcggtgccgaggctgttgacggtggttatggtgaaaatgaaggagaaaatgagtgttagtgatgt |
297 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25742138 |
atggcggtagtggtggcggtgccgaggctgttgacggtggttatggtgaaaatgaaggagaaaatgagtgttagtgatgt |
25742217 |
T |
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