View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11432_high_5 (Length: 271)
Name: NF11432_high_5
Description: NF11432
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11432_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 7 - 261
Target Start/End: Original strand, 37335081 - 37335335
Alignment:
| Q |
7 |
caatgaacagttttggccccaatgtatactttagtgtcacgcttcttggttttgtactcttatctattttgttttgagaattttcagttgaccaatgttc |
106 |
Q |
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| T |
37335081 |
caatgaacagttttggccccaatgtatattttagtgtcacgcttcttggttttgtactcttatctattttgttttgagaattttcagttgaccaatgttc |
37335180 |
T |
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| Q |
107 |
ttgtttgaatgatttaaatgccaaaaataaaatattcggcttcttcggaattatttttaaaagcactgcacatgaaattgaccacaaaagagtgttttaa |
206 |
Q |
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| T |
37335181 |
ttgtttgaattatttaaatgccaaaaataaaatattcggcttcttcggaattatttttaaaagcactgcacatgaaattgaccacaaaagagtgttttaa |
37335280 |
T |
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| Q |
207 |
tattgatataaagaccttttgaagccagtggctcaagtgcattggaaaatctctg |
261 |
Q |
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| T |
37335281 |
tattgatataaagaccttttaaagccagtggctcaagtgcattggaaaatctctg |
37335335 |
T |
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Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 81 - 142
Target Start/End: Original strand, 11664455 - 11664516
Alignment:
| Q |
81 |
tgagaattttcagttgaccaatgttcttgtttgaatgatttaaatgccaaaaataaaatatt |
142 |
Q |
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| T |
11664455 |
tgagaattttcggtttgctaatattcttgtttgaatgatttgaatgccaaagataaaatatt |
11664516 |
T |
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