View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11432_low_2 (Length: 610)

Name: NF11432_low_2
Description: NF11432
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11432_low_2
NF11432_low_2
[»] chr1 (2 HSPs)
chr1 (9-610)||(42285667-42286270)
chr1 (535-593)||(12805469-12805527)


Alignment Details
Target: chr1 (Bit Score: 495; Significance: 0; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 495; E-Value: 0
Query Start/End: Original strand, 9 - 610
Target Start/End: Original strand, 42285667 - 42286270
Alignment:
Q  9 aatgaaagaaaacacacatagaaagagatattgttatatatgcatacgggtggacaagcatgcatgtaaagtagcaaaataaattatttaaatattcata 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42285667 aatgaaagaaaacacacatagaaagagatattgttatatatgcatacgggtggacaagcatgcatgtaaagtagcaaaataaattatttaaatattcata 42285766  T
Q  109 tgacacaaaatgattgaggaatataacaagagagggtagctaaatttcacacacaagaaaacaatagccagaagataaatagctaggtatattgttttct 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42285767 tgacacaaaatgattgaggaatataacaagagagggtagctaaattttacacacaagaaaacaatagccagaagataaatagctaggtatattgttttct 42285866  T
Q  209 tctcctcgtctcttcattactcttgtctccttagatcctttcctcttgcaacctttttgctctcaatctgtgagnnnnnnnnnctactttttcttctgac 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||||    
T  42285867 tctcctcgtctcttcattactcttgtctccttagatcctttcctcttgcaacctttttgctctcaatctgtgagtttttttttctactttttcttctgac 42285966  T
Q  309 atgnnnnnnnnnnnnnnnnnnnnntcaa--atatatatatttcagctctttctagcttctttaaattattttgttatatagtttctttaatttaactgat 406  Q
    |||                     ||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42285967 atgaaaaaaacaaccacaaaaaaatcaaatatatatatatttcagctctttctagcttctttaaattattttgttatatagtttctttaatttaactgat 42286066  T
Q  407 ctcttttttgttatccttgttccatgagagaaggaaacatgttaatgaaatttttcttttagaagaagaattaaacatttgattattaactttttgttta 506  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  42286067 ctcttttttgttatccttgttccatgagagaaggaaacatgttaatgaaatttttcttttagaagaagaattaaacatttgattattaagtttttgttta 42286166  T
Q  507 aaaatttcagattgcaaaatatataattatggcggctgcttcttcatctacatcattctttggaatcagagaagaaaatcaaagtcaaataacacatcat 606  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42286167 aaaatttcagattgcaaaatatataattatggcggctgcttcttcatctacatcattctttggaatcagagaagaaaatcaaagtcaaataacacatcat 42286266  T
Q  607 catc 610  Q
    ||||    
T  42286267 catc 42286270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 535 - 593
Target Start/End: Complemental strand, 12805527 - 12805469
Alignment:
Q  535 atggcggctgcttcttcatctacatcattctttggaatcagagaagaaaatcaaagtca 593  Q
    ||||| |||||||| ||||||||| | ||||| | ||||||| ||||||||||||||||    
T  12805527 atggctgctgcttcatcatctacacctttcttggaaatcagacaagaaaatcaaagtca 12805469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University