View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11432_low_5 (Length: 317)
Name: NF11432_low_5
Description: NF11432
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11432_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 224; Significance: 1e-123; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 69 - 312
Target Start/End: Complemental strand, 45113462 - 45113219
Alignment:
| Q |
69 |
aaaagtttagagatgcatacttgagcgatgatagttatggcaagagttgaattgccaaacggcaatacgctagtgctggtgacaaacaaatgaagatttt |
168 |
Q |
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| T |
45113462 |
aaaagtttagagatgcatacttgagcgatgatagtaatgccaagagttgaattgccaaacggcaatatgctagtgctggtgacaaacaaatgaagatttt |
45113363 |
T |
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| Q |
169 |
gaagcatgtccaatattttgtgttgaatgccattttccttctcacaattgatgtaaatgagtatattattctccaacactttcactttgacatcaggaag |
268 |
Q |
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| T |
45113362 |
gaagcatgtccaatattttgtgttgaatgccattttccttctcacaattgatgtaaatgagtatattattctccaacactttcactttgacatcaggaag |
45113263 |
T |
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| Q |
269 |
aaaatcatttattggtctaagataattgtcaagattcatctcac |
312 |
Q |
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| T |
45113262 |
aaaattatttattggtctaagataattgtcaagattcatttcac |
45113219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 59 - 312
Target Start/End: Complemental strand, 45124752 - 45124502
Alignment:
| Q |
59 |
gtatagcatgaaaagtttagagatgcatacttgagcgatgatagttatggcaagagttgaattgccaaacggcaatacgctagtgctggtgacaaacaaa |
158 |
Q |
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| T |
45124752 |
gtatagcatgaaaagtttagagatgcatacttgagcgatgatagttatggcaagagttgaattgccaaacggcaatacgctagtgctggtgacaaacaaa |
45124653 |
T |
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| Q |
159 |
tgaagattttgaagcatgtccaatattttgtgttgaatgccattttccttctcacaattgatgtaaatgagtatattattctccaacactttcactttga |
258 |
Q |
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| T |
45124652 |
tgaagattttgaagcatgtccaatattttgtgttgaatgccattttccttctcacaattgatataaatgagtatattattctccgacactttcactttga |
45124553 |
T |
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| Q |
259 |
catcaggaagaaaatcatttattggtctaagataattgtcaagattcatctcac |
312 |
Q |
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| T |
45124552 |
catctggaagcaattcat---ttggtctaaaacaattgtcaagattcatttcac |
45124502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 109 - 265
Target Start/End: Complemental strand, 45105970 - 45105814
Alignment:
| Q |
109 |
caagagttgaattgccaaacggcaatacgctagtgctggtgacaaacaaatgaagattttgaagcatgtccaatattttgtgttgaatgccattttcctt |
208 |
Q |
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| T |
45105970 |
caagagttgaattcccaaaaggaaatacactgctggcagtgacaataagatgaagattttcaagcaaattcaatattttgatctcaatgccattttcctt |
45105871 |
T |
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| Q |
209 |
ctcacaattgatgtaaatgagtatattattctccaacactttcactttgacatcagg |
265 |
Q |
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| T |
45105870 |
ctcacaatggatctcaatgagtacttcattttccaacactcttgctttgacatcagg |
45105814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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