View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11433_high_1 (Length: 1146)

Name: NF11433_high_1
Description: NF11433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11433_high_1
NF11433_high_1
[»] chr1 (32 HSPs)
chr1 (19-1132)||(9298407-9299534)
chr1 (267-474)||(9258442-9258649)
chr1 (987-1112)||(424304-424430)
chr1 (987-1113)||(33487042-33487169)
chr1 (987-1113)||(12871603-12871730)
chr1 (918-1057)||(32878621-32878761)
chr1 (987-1110)||(3232770-3232894)
chr1 (987-1112)||(14265266-14265392)
chr1 (923-1112)||(29205203-29205393)
chr1 (987-1112)||(32784090-32784216)
chr1 (990-1112)||(27534684-27534807)
chr1 (937-1112)||(33125818-33125994)
chr1 (987-1112)||(7995573-7995699)
chr1 (1032-1110)||(28399336-28399414)
chr1 (987-1110)||(28678145-28678269)
chr1 (255-325)||(9467665-9467735)
chr1 (988-1112)||(42490876-42491001)
chr1 (1023-1112)||(44517167-44517255)
chr1 (1020-1112)||(4882372-4882463)
chr1 (1020-1112)||(10627017-10627108)
chr1 (991-1113)||(45193638-45193761)
chr1 (987-1112)||(20411555-20411681)
chr1 (1050-1113)||(45425484-45425547)
chr1 (987-1107)||(18343596-18343717)
chr1 (987-1112)||(42276339-42276463)
chr1 (1032-1113)||(45750507-45750587)
chr1 (1032-1112)||(29726609-29726688)
chr1 (1032-1112)||(37822358-37822437)
chr1 (1072-1112)||(50107927-50107967)
chr1 (1078-1112)||(15391265-15391299)
chr1 (1026-1112)||(51418037-51418121)
chr1 (1048-1105)||(34899025-34899082)
[»] chr7 (35 HSPs)
chr7 (924-1112)||(21954831-21955020)
chr7 (962-1112)||(39707248-39707398)
chr7 (987-1112)||(28664925-28665051)
chr7 (987-1112)||(9785299-9785425)
chr7 (989-1112)||(45482048-45482172)
chr7 (923-1113)||(10574299-10574490)
chr7 (990-1112)||(36579325-36579448)
chr7 (987-1112)||(22747521-22747646)
chr7 (987-1112)||(45457569-45457695)
chr7 (986-1112)||(32740733-32740861)
chr7 (987-1112)||(5684347-5684473)
chr7 (987-1112)||(5709397-5709523)
chr7 (990-1112)||(17509217-17509339)
chr7 (990-1112)||(17543875-17543997)
chr7 (1023-1113)||(10094461-10094550)
chr7 (990-1112)||(11833003-11833127)
chr7 (1023-1112)||(14657834-14657924)
chr7 (987-1112)||(21603445-21603570)
chr7 (988-1112)||(42603782-42603907)
chr7 (963-1103)||(29352205-29352345)
chr7 (986-1113)||(39532987-39533115)
chr7 (987-1112)||(27535438-27535566)
chr7 (987-1112)||(41287939-41288066)
chr7 (987-1112)||(1281150-1281276)
chr7 (987-1112)||(17473736-17473862)
chr7 (987-1112)||(17579352-17579478)
chr7 (987-1113)||(48304405-48304534)
chr7 (987-1112)||(3266364-3266496)
chr7 (1032-1108)||(15674629-15674704)
chr7 (1032-1110)||(21990691-21990768)
chr7 (1025-1112)||(24320236-24320322)
chr7 (1023-1113)||(2622612-2622701)
chr7 (1078-1112)||(36719565-36719599)
chr7 (1032-1106)||(42644705-42644778)
chr7 (989-1104)||(4028168-4028281)
[»] chr4 (35 HSPs)
chr4 (962-1112)||(12717130-12717280)
chr4 (918-1112)||(22049417-22049611)
chr4 (923-1112)||(22757015-22757202)
chr4 (1020-1112)||(6881973-6882064)
chr4 (987-1113)||(7060306-7060433)
chr4 (983-1112)||(20399916-20400046)
chr4 (987-1112)||(27394812-27394938)
chr4 (987-1112)||(29268790-29268916)
chr4 (987-1112)||(44757055-44757181)
chr4 (990-1112)||(13965545-13965668)
chr4 (987-1113)||(24825631-24825758)
chr4 (1021-1112)||(50801235-50801325)
chr4 (988-1112)||(5814330-5814455)
chr4 (962-1097)||(3159000-3159136)
chr4 (987-1112)||(6911662-6911788)
chr4 (987-1112)||(43244394-43244520)
chr4 (987-1107)||(478030-478150)
chr4 (987-1110)||(24568728-24568852)
chr4 (1020-1112)||(43493300-43493391)
chr4 (987-1112)||(394287-394413)
chr4 (987-1112)||(7861219-7861344)
chr4 (987-1112)||(30202020-30202146)
chr4 (929-1112)||(25658091-25658275)
chr4 (987-1112)||(24100121-24100249)
chr4 (987-1113)||(26742475-26742602)
chr4 (992-1112)||(7083829-7083950)
chr4 (987-1112)||(42197535-42197662)
chr4 (987-1065)||(31521964-31522044)
chr4 (987-1108)||(51152107-51152228)
chr4 (987-1112)||(11210326-11210452)
chr4 (1033-1108)||(26674402-26674476)
chr4 (1034-1096)||(27090755-27090817)
chr4 (1078-1112)||(36124362-36124396)
chr4 (1078-1112)||(38944161-38944195)
chr4 (987-1113)||(39837576-39837704)
[»] chr2 (33 HSPs)
chr2 (962-1110)||(17767566-17767715)
chr2 (987-1112)||(27095687-27095813)
chr2 (987-1113)||(44942267-44942394)
chr2 (987-1112)||(20561145-20561271)
chr2 (987-1112)||(22597117-22597243)
chr2 (987-1112)||(43474141-43474267)
chr2 (987-1112)||(5754270-5754396)
chr2 (987-1112)||(33012059-33012185)
chr2 (988-1112)||(25067835-25067960)
chr2 (989-1104)||(11798537-11798653)
chr2 (987-1112)||(12704669-12704795)
chr2 (987-1108)||(15919856-15919977)
chr2 (1032-1110)||(6431402-6431480)
chr2 (1022-1108)||(13740677-13740762)
chr2 (987-1112)||(11937871-11937998)
chr2 (987-1112)||(38535318-38535444)
chr2 (1050-1112)||(11581141-11581203)
chr2 (1020-1114)||(34416772-34416865)
chr2 (1032-1110)||(35333534-35333611)
chr2 (1020-1112)||(4739346-4739437)
chr2 (983-1112)||(4604320-4604450)
chr2 (987-1112)||(9978682-9978808)
chr2 (1023-1112)||(4426671-4426759)
chr2 (990-1113)||(31908828-31908952)
chr2 (1023-1112)||(32314462-32314550)
chr2 (987-1065)||(17268183-17268263)
chr2 (1078-1113)||(10287018-10287053)
chr2 (1078-1113)||(41797668-41797703)
chr2 (1070-1108)||(17792540-17792578)
chr2 (987-1112)||(18089409-18089531)
chr2 (1079-1112)||(12891132-12891165)
chr2 (1035-1104)||(13879027-13879095)
chr2 (1035-1104)||(14019152-14019220)
[»] scaffold0312 (1 HSPs)
scaffold0312 (987-1112)||(6119-6245)
[»] chr3 (35 HSPs)
chr3 (964-1112)||(106056-106206)
chr3 (987-1112)||(36691820-36691946)
chr3 (261-407)||(9170527-9170673)
chr3 (987-1112)||(31270308-31270434)
chr3 (987-1112)||(11819065-11819191)
chr3 (987-1111)||(13701994-13702119)
chr3 (987-1110)||(53155453-53155577)
chr3 (1033-1112)||(2147756-2147835)
chr3 (987-1112)||(3456925-3457051)
chr3 (987-1112)||(48652461-48652587)
chr3 (924-1112)||(32080775-32080965)
chr3 (1032-1112)||(35174733-35174812)
chr3 (1023-1111)||(54239040-54239127)
chr3 (987-1112)||(31462767-31462893)
chr3 (987-1112)||(34960879-34961005)
chr3 (987-1112)||(36624715-36624841)
chr3 (987-1112)||(48400881-48401007)
chr3 (1073-1113)||(24520706-24520746)
chr3 (1032-1112)||(41868315-41868394)
chr3 (1050-1110)||(47733900-47733960)
chr3 (1032-1112)||(49628108-49628187)
chr3 (987-1112)||(14585444-14585570)
chr3 (1032-1113)||(22484994-22485074)
chr3 (987-1112)||(38527245-38527371)
chr3 (988-1112)||(40013293-40013421)
chr3 (1050-1112)||(4219226-4219288)
chr3 (1078-1112)||(33637477-33637511)
chr3 (1032-1110)||(40883891-40883968)
chr3 (1048-1113)||(40401521-40401586)
chr3 (1020-1112)||(55090604-55090695)
chr3 (1035-1113)||(39610244-39610321)
chr3 (982-1024)||(43839601-43839643)
chr3 (987-1112)||(4206532-4206658)
chr3 (1071-1112)||(5327497-5327538)
chr3 (1078-1111)||(34103739-34103772)
[»] chr8 (29 HSPs)
chr8 (962-1112)||(2968486-2968640)
chr8 (988-1113)||(14600718-14600844)
chr8 (1022-1112)||(31308167-31308256)
chr8 (1020-1110)||(32778973-32779063)
chr8 (931-1051)||(13576257-13576378)
chr8 (987-1112)||(37612635-37612761)
chr8 (987-1112)||(30026901-30027027)
chr8 (986-1113)||(10338842-10338970)
chr8 (932-1024)||(25939757-25939848)
chr8 (988-1112)||(9501572-9501698)
chr8 (959-1113)||(7281600-7281757)
chr8 (985-1112)||(2234491-2234619)
chr8 (929-1112)||(30039358-30039536)
chr8 (1032-1113)||(39067709-39067789)
chr8 (987-1112)||(24791189-24791315)
chr8 (987-1112)||(31407769-31407895)
chr8 (987-1112)||(41361714-41361840)
chr8 (987-1112)||(2025230-2025356)
chr8 (990-1112)||(3204777-3204899)
chr8 (987-1112)||(11161864-11161990)
chr8 (1023-1112)||(37128507-37128595)
chr8 (987-1112)||(10147928-10148055)
chr8 (987-1112)||(12329608-12329735)
chr8 (1032-1108)||(15288823-15288898)
chr8 (1032-1108)||(15469192-15469267)
chr8 (1026-1112)||(4757188-4757273)
chr8 (1078-1112)||(7579876-7579910)
chr8 (1070-1112)||(13576208-13576250)
chr8 (1023-1112)||(23971117-23971203)
[»] scaffold0155 (1 HSPs)
scaffold0155 (988-1105)||(35065-35185)
[»] chr6 (11 HSPs)
chr6 (987-1112)||(6419871-6419997)
chr6 (990-1112)||(14783184-14783307)
chr6 (987-1112)||(12481383-12481509)
chr6 (987-1112)||(15590092-15590218)
chr6 (987-1112)||(21507821-21507947)
chr6 (988-1112)||(23654233-23654358)
chr6 (987-1112)||(4921894-4922021)
chr6 (987-1112)||(2304823-2304949)
chr6 (987-1112)||(8693670-8693799)
chr6 (987-1112)||(19402821-19402947)
chr6 (1034-1096)||(2488169-2488231)
[»] chr5 (24 HSPs)
chr5 (987-1112)||(17331310-17331436)
chr5 (989-1112)||(17699537-17699661)
chr5 (957-1110)||(25961878-25962033)
chr5 (987-1113)||(29097771-29097898)
chr5 (988-1112)||(178119-178244)
chr5 (1020-1112)||(39179841-39179932)
chr5 (988-1110)||(12439649-12439771)
chr5 (987-1104)||(43493854-43493972)
chr5 (987-1112)||(6281026-6281152)
chr5 (987-1112)||(28040611-28040737)
chr5 (987-1112)||(33164481-33164607)
chr5 (990-1112)||(6635234-6635358)
chr5 (930-1112)||(17096252-17096432)
chr5 (987-1110)||(32347729-32347854)
chr5 (987-1113)||(27241046-27241173)
chr5 (1033-1112)||(3740387-3740465)
chr5 (1023-1112)||(17687225-17687313)
chr5 (990-1113)||(34431045-34431169)
chr5 (987-1107)||(39531422-39531540)
chr5 (987-1113)||(20483168-20483295)
chr5 (1032-1112)||(23882129-23882208)
chr5 (1033-1112)||(12891706-12891784)
chr5 (990-1042)||(11824917-11824970)
chr5 (1027-1112)||(18653806-18653890)
[»] scaffold1379 (2 HSPs)
scaffold1379 (920-1112)||(1099-1292)
scaffold1379 (1032-1112)||(4-83)
[»] scaffold0294 (1 HSPs)
scaffold0294 (983-1113)||(4079-4209)
[»] scaffold0536 (1 HSPs)
scaffold0536 (987-1112)||(2882-3010)
[»] scaffold0321 (1 HSPs)
scaffold0321 (1020-1112)||(7137-7228)
[»] scaffold0056 (1 HSPs)
scaffold0056 (989-1113)||(74148-74273)
[»] scaffold0432 (1 HSPs)
scaffold0432 (987-1105)||(2438-2555)
[»] scaffold1350 (1 HSPs)
scaffold1350 (1070-1112)||(1640-1682)
[»] scaffold0001 (1 HSPs)
scaffold0001 (991-1112)||(404271-404393)


Alignment Details
Target: chr1 (Bit Score: 895; Significance: 0; HSPs: 32)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 895; E-Value: 0
Query Start/End: Original strand, 19 - 1132
Target Start/End: Complemental strand, 9299534 - 9298407
Alignment:
Q  19 ccataccatttcaatgagagtatgtttgattgaatggaagatgcgtgnnnnnnngaaacgcgatcaaacagtttgatgcagtatacaagatcagattcaa 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |       | ||||||||||||||||||||||||||||||||||||||||||||    
T  9299534 ccataccatttcaatgagagtatgtttgattgaatggaagatgcgggaaataaagcaacgcgatcaaacagtttgatgcagtatacaagatcagattcaa 9299435  T
Q  119 tgattctttcgctatccgaatcagcaacataaattggacatgatgtcatattttgtgcttcgtacacttgagagtagcttcagagttgtacaactgaaga 218  Q
    |||| || ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||| ||||||||||||||||||    
T  9299434 tgatactatcgctatccgaataagcaacataaattggacatgatgtcatattttgtgcttcgtacacttgattgtagcttctgagttgtacaactgaaga 9299335  T
Q  219 acaattgaagaaactgatatttc---------------cggagatataaggcttaacaggaaaaattgatgaaaagttgtggtcaagtaagagctgtggt 303  Q
    |||||||||||||||||||||||               |||||| ||||||||||| |||||||||||||||||||||||||||||||||||| ||||||    
T  9299334 acaattgaagaaactgatatttctagatacagaatatccggagagataaggcttaaaaggaaaaattgatgaaaagttgtggtcaagtaagagttgtggt 9299235  T
Q  304 aaacaatttccaggatcagataaatctattcttgggtttgtataatcaatgtcagtgaggatgagtttcacagggactggttgagtaggaagttcaagaa 403  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9299234 aaacaatttccaggatcagataaatctattcttgggtctgtataatcaatgtcagtgaggatgagtttcacagggactggttgagtaggaagttcaagaa 9299135  T
Q  404 tctttttgttatgcgtacattcgagcttgaagggacatcgattggatgaatcactgagacaatttccaaggttcattagaaatagcagcatagcaagttt 503  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9299134 tctttttgttatgtgtacattcgagcttgaagggacatcgattggatgaatcactgagacaatttccaaggttcattagaaatagcagcatagcaagttt 9299035  T
Q  504 tgttaatatcagtgacatgttgaagggattcttagaactttaaactggtataatttaatatatagagcaagagagggataaagtagacagaagatgatat 603  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  9299034 tgttaatatcagtgacatgttgaagggattcttagaactttaaactggtataatttaatatatagagcaagagagggataaagtagaaagaagatgatat 9298935  T
Q  604 aaagaaacataattgtatctatctctatgctattaagaatgaaaataatatgctgcnnnnnnnnnntattgattaagaatcggtcaaagtccaagaatat 703  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||          ||| ||||||||||||||||||||||||||||||    
T  9298934 aaagaaacataattgtatctatctctatgctattaaaaatgaaaataatatgctgcaaaaaaaaa-tatagattaagaatcggtcaaagtccaagaatat 9298836  T
Q  704 gatgtgcattgcaagctccctattcaagtacatgataaataatgctaagaaacacattgatcttcaagtacatgtttcaacaaaatgtttttgatcgatt 803  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||    
T  9298835 gatgtgcattgcaagctccctattcaagtacatgataaataatgctaagaaacacattgatctacaagtacatgtttcaacaaaatgtttttgattgatt 9298736  T
Q  804 aaaattcacactgagtcctccaaatttacgagacccacataatcaattcaaaagagttttgaaaaatatgtattaaaaattatgttgccatcacttaatt 903  Q
    |||||||| | ||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  9298735 aaaattcatagtgaatcctccaaatttacgatacccacataatcaattcaaaagagttttgaaaaatatgtattaaaaattatgttgccatcatttaatt 9298636  T
Q  904 ttaatatcaacacctttttctctcgcttctcttcttctcaaaccttaaccgtcggccatttcttcttattgtctattgaagaagggtgatttagggtcaa 1003  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  9298635 ttaatatcaacacctttttctctcgcttctcttcttctcaaaccttaactgtcggccatttcttcttcttgtctattgaagaagggtgatttagggtcaa 9298536  T
Q  1004 ttttgaaccaaagtcaccctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatt 1103  Q
    ||||||||||||||||||||||||||| ||||||||||||||| | |||||||||||||||||| ||||||||||||||||||||||| |||||||||||    
T  9298535 ttttgaaccaaagtcaccctccgagttgtttttccttctatcctagttaaataattgatttccacgtattttaagttttctttcgtttgtttttgtgatt 9298436  T
Q  1104 tcgtcgtcttgtactctgcttgttttgat 1132  Q
    || | ||||||||||||||||||||||||    
T  9298435 tcattgtcttgtactctgcttgttttgat 9298407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 80; E-Value: 6e-37
Query Start/End: Original strand, 267 - 474
Target Start/End: Original strand, 9258442 - 9258649
Alignment:
Q  267 aattgatgaaaagttgtggtcaagtaagagctgtggtaaacaatttccaggatcagataaatctattcttgggtttgtataatcaatgtcagtgaggatg 366  Q
    ||||||||||||||||||||||| |||||| || |||||||||||||  | |||||||| |||||| |||  |     |||||||||||| ||||  |||    
T  9258442 aattgatgaaaagttgtggtcaaataagagttgcggtaaacaatttctggtatcagatagatctatacttttgaaacgataatcaatgtctgtgaccatg 9258541  T
Q  367 agtttcacagggactggttgagtaggaagttcaagaatctttttgttatgcgtacattcgagcttgaagggacatcgattggatgaatcactgagacaat 466  Q
    ||||||||||| ||||| |||||||||||||||||||| ||  ||||||| ||||| | ||||||||||||||||| | |||| | |||||| |||| ||    
T  9258542 agtttcacaggaactgggtgagtaggaagttcaagaatattcatgttatgtgtacagttgagcttgaagggacatccaatggaagcatcacttagaccat 9258641  T
Q  467 ttccaagg 474  Q
    ||||||||    
T  9258642 ttccaagg 9258649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 987 - 1112
Target Start/End: Complemental strand, 424430 - 424304
Alignment:
Q  987 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 1084  Q
    ||||||||||||||||||||||| |||||  |||||| |||||||| ||||||||||||||| |||| ||||| ||||||| |  ||||||  |||||||    
T  424430 gggtgatttagggtcaattttgacccaaaaatcacccctccgagttgtttttccttctatcctaattgaataagtgatttc-acatattttctgttttct 424332  T
Q  1085 ttcgtttatttttgtgatttcgtcgtct 1112  Q
    ||||||| ||||||||||||||||||||    
T  424331 ttcgtttgtttttgtgatttcgtcgtct 424304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 987 - 1113
Target Start/End: Complemental strand, 33487169 - 33487042
Alignment:
Q  987 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 1084  Q
    ||||||||||||||||||||||| |||||  |||||| ||||| || ||||||||||||||| |||| ||||  ||||||| || ||||||| | |||||    
T  33487169 gggtgatttagggtcaattttgacccaaaaatcacccctccgaattgtttttccttctatcctaattgaatatgtgatttc-atatattttatgctttct 33487071  T
Q  1085 ttcgtttatttttgtgatttcgtcgtctt 1113  Q
    ||||||| |||||||||||||||||||||    
T  33487070 ttcgtttgtttttgtgatttcgtcgtctt 33487042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 53; E-Value: 8e-21
Query Start/End: Original strand, 987 - 1113
Target Start/End: Original strand, 12871603 - 12871730
Alignment:
Q  987 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 1084  Q
    ||||||||||||||||||||||| |||||  |||||| |||||||| |||||| || ||||| |||  ||||| ||||||| |  |||||| ||||||||    
T  12871603 gggtgatttagggtcaattttgacccaaaaatcacccctccgagttgtttttcattatatcctaatcgaataagtgatttc-acatattttcagttttct 12871701  T
Q  1085 ttcgtttatttttgtgatttcgtcgtctt 1113  Q
    ||||||| |||||||||||||||||||||    
T  12871702 ttcgtttgtttttgtgatttcgtcgtctt 12871730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 53; E-Value: 8e-21
Query Start/End: Original strand, 918 - 1057
Target Start/End: Original strand, 32878621 - 32878761
Alignment:
Q  918 tttttctctcgcttctcttcttctcaaaccttaaccgtcggccatttcttcttattgtctattgaagaagggtgatttagggtcaattttgaaccaaagt 1017  Q
    |||||||||| | ||||| ||||||||||  ||||||||  || ||||||||| || |||||  |||| |||||||||||||| |||||||| ||||| |    
T  32878621 tttttctctctcctctctccttctcaaactctaaccgtcacccctttcttcttcttatctatcaaagatgggtgatttagggttaattttgacccaaaat 32878720  T
Q  1018 ca-ccctccgagttatttttccttctatccaaattaaataa 1057  Q
    || || |||||||| ||||||| ||||||| ||||||||||    
T  32878721 catccttccgagttgtttttccctctatcctaattaaataa 32878761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 987 - 1110
Target Start/End: Original strand, 3232770 - 3232894
Alignment:
Q  987 gggtgatttagggtcaattttgaac-caaagtca-ccctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 1084  Q
    ||||||||||||||||||||||| |  ||| ||| |||||||| || ||||||||||||||| |||| ||||| |||||| ||  ||||||  |||||||    
T  3232770 gggtgatttagggtcaattttgatcaaaaaatcacccctccgaattgtttttccttctatcctaattgaataaatgattt-cacatattttctgttttct 3232868  T
Q  1085 ttcgtttatttttgtgatttcgtcgt 1110  Q
    ||||||| ||||||||||||||||||    
T  3232869 ttcgtttgtttttgtgatttcgtcgt 3232894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 987 - 1112
Target Start/End: Original strand, 14265266 - 14265392
Alignment:
Q  987 gggtgatttagggtcaattttga-accaaagtca-ccctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 1084  Q
    ||||||||||||||||||||||| |  ||| ||| ||||||||| | ||||||||||||||| |||||||||| |||||| ||  ||||||  |||||||    
T  14265266 gggtgatttagggtcaattttgacaaaaaaatcacccctccgagctgtttttccttctatcctaattaaataagtgattt-cacatattttctgttttct 14265364  T
Q  1085 ttcgtttatttttgtgatttcgtcgtct 1112  Q
    | ||| | ||||||||||||||||||||    
T  14265365 tacgtatgtttttgtgatttcgtcgtct 14265392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 923 - 1112
Target Start/End: Original strand, 29205203 - 29205393
Alignment:
Q  923 ctctcgcttctcttcttctcaaaccttaaccgtcggccatttcttcttattgtctattgaagaagggtgatttagggtcaattttgaaccaaag-tcacc 1021  Q
    ||||| ||||||| ||||||||||| || |||||| || ||||||| | || |   ||  ||| ||||||||||||||||||||||| |||||  |||||    
T  29205203 ctctctcttctctccttctcaaaccctagccgtcgcccttttcttcgtcttcttctttttagacgggtgatttagggtcaattttgacccaaaaatcacc 29205302  T
Q  1022 c-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtct 1112  Q
    | |  || || ||||||||||||||  |||| ||||| ||||||| || ||||||  ||||||||| |||| ||||||||||||||||||||    
T  29205303 ccttggaattgtttttccttctatcataattgaataagtgatttc-atatattttctgttttcttttgtttgtttttgtgatttcgtcgtct 29205393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 987 - 1112
Target Start/End: Original strand, 32784090 - 32784216
Alignment:
Q  987 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 1084  Q
    ||||||||||||||||||||||| |||||  |||||| ||||| || |||||||||||||||  ||| ||||| ||||||| |  ||||||  |||||||    
T  32784090 gggtgatttagggtcaattttgacccaaaaatcacccctccgaattgtttttccttctatccttattgaataagtgatttc-acatattttctgttttct 32784188  T
Q  1085 ttcgtttatttttgtgatttcgtcgtct 1112  Q
    || |||| ||||||||||||||||||||    
T  32784189 tttgtttgtttttgtgatttcgtcgtct 32784216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 990 - 1112
Target Start/End: Original strand, 27534684 - 27534807
Alignment:
Q  990 tgatttagggtcaattttgaaccaaag-tca-ccctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctttc 1087  Q
    |||||||||||||||||||| |||||  ||| |||||||| || |||||||||||| |  |||| ||||| ||||||| |  ||||||  ||||||||||    
T  27534684 tgatttagggtcaattttgacccaaaaatcatccctccgatttgtttttccttctaccttaattgaataagtgatttc-acatattttctgttttctttc 27534782  T
Q  1088 gtttatttttgtgatttcgtcgtct 1112  Q
    |||| ||||||||||||||||||||    
T  27534783 gtttgtttttgtgatttcgtcgtct 27534807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 937 - 1112
Target Start/End: Complemental strand, 33125994 - 33125818
Alignment:
Q  937 cttctcaaaccttaaccgtcggccatttcttcttattgtctattgaagaagggtgatttagggtcaattttgaaccaaagtcac-cctccgagttatttt 1035  Q
    ||||||||||||||  ||||   ||||||||||| |||||||||||| |  |||||||||||||||||||||| ||||| |||| | ||  | || ||||    
T  33125994 cttctcaaaccttagtcgtcactcatttcttctttttgtctattgaaaagaggtgatttagggtcaattttgacccaaaatcactcatctaaattgtttt 33125895  T
Q  1036 tccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtct 1112  Q
    ||||||| |   |||| ||||| |||||||||  || ||| ||| ||||||  ||| ||||||||||||||| ||||    
T  33125894 tccttcttttataattgaataagtgatttccacataattttagtattcttttctttgtttttgtgatttcgttgtct 33125818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 987 - 1112
Target Start/End: Complemental strand, 7995699 - 7995573
Alignment:
Q  987 gggtgatttagggtcaattttgaacc-aaagtcacc-ctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 1084  Q
    ||||||||||||||||||||||| || ||| ||||| |||||| || ||||||||||||||| |||| ||||| |||||| ||  ||||||  |||||||    
T  7995699 gggtgatttagggtcaattttgacccaaaaatcacctctccgaattgtttttccttctatcctaattgaataagtgattt-cacatattttctgttttct 7995601  T
Q  1085 ttcgtttatttttgtgatttcgtcgtct 1112  Q
    | | ||| |||||||||| |||||||||    
T  7995600 tccttttttttttgtgatatcgtcgtct 7995573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 1032 - 1110
Target Start/End: Complemental strand, 28399414 - 28399336
Alignment:
Q  1032 tttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgt 1110  Q
    ||||||||| ||||  |||||||||| |||||| ||  |||||| ||||||||||||||| ||||||||||||||||||    
T  28399414 tttttccttatatcataattaaataagtgattttcacatatttttagttttctttcgtttgtttttgtgatttcgtcgt 28399336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 987 - 1110
Target Start/End: Complemental strand, 28678269 - 28678145
Alignment:
Q  987 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 1084  Q
    ||||||||||||||||||||||| |||||  |||| | ||||| || |||||| |||||||  |||| ||||| ||||||| |  |||||||  ||||||    
T  28678269 gggtgatttagggtcaattttgacccaaaaatcactcgtccgaattgtttttcgttctatcataattgaataagtgatttc-acatattttatattttct 28678171  T
Q  1085 ttcgtttatttttgtgatttcgtcgt 1110  Q
    ||||||| ||||||||||||||||||    
T  28678170 ttcgtttgtttttgtgatttcgtcgt 28678145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 255 - 325
Target Start/End: Original strand, 9467665 - 9467735
Alignment:
Q  255 cttaacaggaaaaattgatgaaaagttgtggtcaagtaagagctgtggtaaacaatttccaggatcagata 325  Q
    ||||| ||||||| |||||||||| ||| ||||||||||||| ||||| | ||| ||||||||||||||||    
T  9467665 cttaaaaggaaaatttgatgaaaaattgcggtcaagtaagagttgtggaagacagtttccaggatcagata 9467735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 988 - 1112
Target Start/End: Original strand, 42490876 - 42491001
Alignment:
Q  988 ggtgatttagggtcaattttgaac-caaagtca-ccctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctt 1085  Q
    |||||||||||||||| ||||| |  ||| ||| |||||||| || |||||| |||||||  |||| ||||| |||||| ||  ||| || |||||||||    
T  42490876 ggtgatttagggtcaagtttgacctaaaaatcacccctccgaattgtttttcgttctatcttaattgaataagtgattt-cacatatcttcagttttctt 42490974  T
Q  1086 tcgtttatttttgtgatttcgtcgtct 1112  Q
    |||||| ||||||||||||||||||||    
T  42490975 tcgtttgtttttgtgatttcgtcgtct 42491001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 1023 - 1112
Target Start/End: Original strand, 44517167 - 44517255
Alignment:
Q  1023 tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtct 1112  Q
    ||||| || ||||||||||||||| |||| ||||| ||||||| |  ||||||  | |||||||||||| ||||||||||||||||||||    
T  44517167 tccgaattgtttttccttctatcctaattcaataagtgatttc-acatattttctgctttctttcgtttgtttttgtgatttcgtcgtct 44517255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 1020 - 1112
Target Start/End: Complemental strand, 4882463 - 4882372
Alignment:
Q  1020 ccctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtct 1112  Q
    |||||||| || |||||| || ||||| |||| ||||| ||||||| |  ||||||  |||||||||||||| ||||||||||||||||||||    
T  4882463 ccctccgatttgtttttcattatatcctaattgaataagtgatttc-acatattttctgttttctttcgtttgtttttgtgatttcgtcgtct 4882372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 1020 - 1112
Target Start/End: Original strand, 10627017 - 10627108
Alignment:
Q  1020 ccctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtct 1112  Q
    ||||||||||| |||||| || ||||| |||| ||||| | ||||| |  ||||||  |||||||||||||| ||||||||||||||||||||    
T  10627017 ccctccgagttgtttttctttatatcctaattgaataagtaatttc-acatattttctgttttctttcgtttgtttttgtgatttcgtcgtct 10627108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 991 - 1113
Target Start/End: Complemental strand, 45193761 - 45193638
Alignment:
Q  991 gatttagggtcaattttgaaccaa-agtcaccctccgagttattttt-ccttctatccaaattaaataattgatttccatgtattttaagttttctttcg 1088  Q
    ||||||||||||||||| | |||| | |  ||||||||||| ||||| |||||||||| |||| ||||| ||||||| |  ||||||  |||| ||||||    
T  45193761 gatttagggtcaattttaacccaataatacccctccgagttgttttttccttctatcctaattgaataagtgatttc-acatattttccgtttcctttcg 45193663  T
Q  1089 tttatttttgtgatttcgtcgtctt 1113  Q
    ||| |||||||||||| ||||||||    
T  45193662 tttgtttttgtgattttgtcgtctt 45193638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 987 - 1112
Target Start/End: Original strand, 20411555 - 20411681
Alignment:
Q  987 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 1084  Q
    |||||||||| |||||||||||| |||||  |||||| ||||| || |||||| || ||| |||||| ||||| ||||||| |  ||||||  |||||||    
T  20411555 gggtgatttatggtcaattttgacccaaaaatcacccatccgaattgtttttctttttattcaaattgaataagtgatttc-acatattttctgttttct 20411653  T
Q  1085 ttcgtttatttttgtgatttcgtcgtct 1112  Q
    ||||||| |||||| |||||| ||||||    
T  20411654 ttcgtttgtttttgggatttcatcgtct 20411681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 1050 - 1113
Target Start/End: Complemental strand, 45425547 - 45425484
Alignment:
Q  1050 ttaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtctt 1113  Q
    |||||||| |||| |||| ||||||| | ||||||||||||  |||||||||||||||||||||    
T  45425547 ttaaataagtgatatccacgtattttcaattttctttcgttagtttttgtgatttcgtcgtctt 45425484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 987 - 1107
Target Start/End: Original strand, 18343596 - 18343717
Alignment:
Q  987 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 1084  Q
    |||||||||||| |||||||||| |||||  |||||| | ||| || |||||||||||| |  |||||||| | ||||||| |  ||||||  |||||||    
T  18343596 gggtgatttaggatcaattttgacccaaaaatcaccccttcgatttgtttttccttctaccttaattaaatgagtgatttc-acatattttctgttttct 18343694  T
Q  1085 ttcgtttatttttgtgatttcgt 1107  Q
    ||||||| |||||||||||||||    
T  18343695 ttcgtttgtttttgtgatttcgt 18343717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 987 - 1112
Target Start/End: Original strand, 42276339 - 42276463
Alignment:
Q  987 gggtgatttagggtcaattttgaaccaaagtcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctt 1085  Q
    |||||||||||||| | ||||||  |||| |||||| ||||| || ||||| ||||||||  |||||||||| ||||||| |  |||||| |||||||||    
T  42276339 gggtgatttagggttatttttgacacaaaatcacccctccgaattgttttttcttctatcataattaaataactgatttc-acatattttcagttttctt 42276437  T
Q  1086 tcgtttatttttgtgatttcgtcgtct 1112  Q
    ||||||   ||||||||| ||||||||    
T  42276438 tcgttt-gatttgtgattacgtcgtct 42276463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 1032 - 1113
Target Start/End: Original strand, 45750507 - 45750587
Alignment:
Q  1032 tttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtctt 1113  Q
    ||||||||| ||||| |||| ||||| | ||||| |  ||||||  |||||||||||||| |||||||||||||||||||||    
T  45750507 tttttccttttatcctaattgaataagttatttc-acatatttttggttttctttcgtttgtttttgtgatttcgtcgtctt 45750587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 1032 - 1112
Target Start/End: Complemental strand, 29726688 - 29726609
Alignment:
Q  1032 tttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtct 1112  Q
    ||||||||| ||||| |||  ||||| ||||||| |  ||||||  |||||||||||||| ||||||||||||||||||||    
T  29726688 tttttccttatatcctaatcgaataagtgatttc-acatattttctgttttctttcgtttgtttttgtgatttcgtcgtct 29726609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 1032 - 1112
Target Start/End: Complemental strand, 37822437 - 37822358
Alignment:
Q  1032 tttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtct 1112  Q
    ||||||||||||||| |||| ||||| ||||||| |  ||||||   ||||||||| ||| ||||||||||||||||||||    
T  37822437 tttttccttctatcctaattgaataagtgatttc-acatattttctattttctttcatttgtttttgtgatttcgtcgtct 37822358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 1072 - 1112
Target Start/End: Complemental strand, 50107967 - 50107927
Alignment:
Q  1072 ttttaagttttctttcgtttatttttgtgatttcgtcgtct 1112  Q
    |||| ||||||||||||||| ||||||||||||||||||||    
T  50107967 ttttcagttttctttcgtttgtttttgtgatttcgtcgtct 50107927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 1078 - 1112
Target Start/End: Complemental strand, 15391299 - 15391265
Alignment:
Q  1078 gttttctttcgtttatttttgtgatttcgtcgtct 1112  Q
    |||||||||||||| ||||||||||||||||||||    
T  15391299 gttttctttcgtttgtttttgtgatttcgtcgtct 15391265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 1026 - 1112
Target Start/End: Original strand, 51418037 - 51418121
Alignment:
Q  1026 gagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtct 1112  Q
    ||||| ||||||||||||||| |||| || || ||||||| |  ||||||  |||||||||||||| ||||||| ||||||||||||    
T  51418037 gagttgtttttccttctatcctaattgaa-aagtgatttc-acatattttctgttttctttcgtttgtttttgtaatttcgtcgtct 51418121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 1048 - 1105
Target Start/End: Original strand, 34899025 - 34899082
Alignment:
Q  1048 aattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttc 1105  Q
    |||||||||| |||||||| | |||||| ||||||||||||| |  ||||||||||||    
T  34899025 aattaaataagtgatttccgtatattttcagttttctttcgtatgattttgtgatttc 34899082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 78; Significance: 9e-36; HSPs: 35)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 78; E-Value: 9e-36
Query Start/End: Original strand, 924 - 1112
Target Start/End: Complemental strand, 21955020 - 21954831
Alignment:
Q  924 tctcgcttctcttcttctcaaaccttaaccgtcggccatttcttcttattgtctattgaagaagggtgatttagggtcaattttgaaccaaagtcaccc- 1022  Q
    |||| ||||||| ||||||||||| ||  |||||| | ||||||||| ||||| |   |||||||||||||||||||||||||| | ||||| |||| |     
T  21955020 tctctcttctctccttctcaaaccctagtcgtcggtcctttcttcttcttgtccaccaaagaagggtgatttagggtcaattttaacccaaaatcactca 21954921  T
Q  1023 tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtct 1112  Q
    |||||||| |||||| |||||||| |||||||||| |||||||||  |||| | ||||||||||||| | ||||||||||||||||||||    
T  21954920 tccgagttgtttttcattctatcctaattaaataaatgatttccacatattgtcagttttctttcgtctgtttttgtgatttcgtcgtct 21954831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 962 - 1112
Target Start/End: Original strand, 39707248 - 39707398
Alignment:
Q  962 tttcttcttattgtctattgaagaagggtgatttagggtcaattttgaaccaaagtcacc-ctccgagttatttttccttctatccaaattaaataattg 1060  Q
    |||||||||||||||||   || ||||||||||||||||||||||||| ||||| ||| | ||||||||| |||||| |||||||| |||||||||| |     
T  39707248 tttcttcttattgtctacc-aataagggtgatttagggtcaattttgacccaaaatcatcactccgagttgtttttctttctatcctaattaaataagtt 39707346  T
Q  1061 atttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtct 1112  Q
    ||||||||||||||| | ||||| ||||||| ||||||||||||||||||||    
T  39707347 atttccatgtattttcacttttcattcgtttgtttttgtgatttcgtcgtct 39707398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 987 - 1112
Target Start/End: Complemental strand, 28665051 - 28664925
Alignment:
Q  987 gggtgatttagggtcaattttgaacc-aaagtcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 1084  Q
    ||||||||||||||||||||||| || ||| |||||| |||||||| ||||||||||||||| |||| ||||| |||||| ||  ||||||  |||||||    
T  28665051 gggtgatttagggtcaattttgaccctaaaatcacccctccgagttgtttttccttctatcctaattgaataagtgattt-cacatattttctgttttct 28664953  T
Q  1085 ttcgtttatttttgtgatttcgtcgtct 1112  Q
    ||||||| |||||||||||| |||||||    
T  28664952 ttcgtttgtttttgtgattttgtcgtct 28664925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 987 - 1112
Target Start/End: Original strand, 9785299 - 9785425
Alignment:
Q  987 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 1084  Q
    ||||||||||||||||||||||| |||||  |||||| | ||| || ||||||||||||||  |||| ||||| ||||||| |  ||||||  |||||||    
T  9785299 gggtgatttagggtcaattttgacccaaaaatcaccccttcgaattgtttttccttctatcttaattgaataagtgatttc-acatattttttgttttct 9785397  T
Q  1085 ttcgtttatttttgtgatttcgtcgtct 1112  Q
    || |||||||||||||||||||||||||    
T  9785398 tttgtttatttttgtgatttcgtcgtct 9785425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 989 - 1112
Target Start/End: Original strand, 45482048 - 45482172
Alignment:
Q  989 gtgatttagggtcaattttgaacc-aaagtcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttcttt 1086  Q
    ||||||||||||||||||||| || ||| |||||| |||||| | ||||||||||||||| |||||||||| |||||| ||  ||||||| |  || |||    
T  45482048 gtgatttagggtcaattttgaccccaaaatcacccctccgagctgtttttccttctatcctaattaaataagtgattt-cacatattttatgcgttgttt 45482146  T
Q  1087 cgtttatttttgtgatttcgtcgtct 1112  Q
    ||||| ||||| ||||||||||||||    
T  45482147 cgtttgtttttatgatttcgtcgtct 45482172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 923 - 1113
Target Start/End: Original strand, 10574299 - 10574490
Alignment:
Q  923 ctctcgcttctcttcttctcaaaccttaaccgtcggccatttcttcttattgtctattgaagaagggtgatttagggtcaattttgaaccaaag-tcacc 1021  Q
    ||||| ||||||| ||||||||||| || |||||  || ||||||||| || |   ||  ||| |||||||||||||||||||||||  ||||  |||||    
T  10574299 ctctctcttctctccttctcaaaccctatccgtcacccctttcttctttttcttctttttagatgggtgatttagggtcaattttgactcaaaaatcacc 10574398  T
Q  1022 c-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtctt 1113  Q
    | ||||| || ||||||||| ||||| |||| |||||  |||||  |  ||||||  |||||||||||||| |||||||||||||||||||||    
T  10574399 cctccgaattgtttttccttttatcctaattgaataaacgatttt-acatattttctgttttctttcgtttgtttttgtgatttcgtcgtctt 10574490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 990 - 1112
Target Start/End: Complemental strand, 36579448 - 36579325
Alignment:
Q  990 tgatttagggtcaattttgaacc-aaagtcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctttc 1087  Q
    |||||||||||||||||||| || ||| |||||| ||||| || ||||||||||||||| | || ||||| ||||| |||  ||||||  |||||||||     
T  36579448 tgatttagggtcaattttgacccgaaaatcacccctccgaattgtttttccttctatcctagttgaataagtgatt-ccacatattttttgttttctttt 36579350  T
Q  1088 gtttatttttgtgatttcgtcgtct 1112  Q
    |||| ||||||||||||||||||||    
T  36579349 gtttgtttttgtgatttcgtcgtct 36579325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 987 - 1112
Target Start/End: Complemental strand, 22747646 - 22747521
Alignment:
Q  987 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 1084  Q
    ||||||||||||||||||||||| |||||  |||||| ||| |||| |||| |||||||||| |||| ||||| ||||||  |  ||||||| |||||||    
T  22747646 gggtgatttagggtcaattttgacccaaaaatcacccctccaagttgtttt-ccttctatcctaattgaataagtgatttg-acatattttatgttttct 22747549  T
Q  1085 ttcgtttatttttgtgatttcgtcgtct 1112  Q
    ||| |||||||||||||||||| |||||    
T  22747548 ttcatttatttttgtgatttcgccgtct 22747521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 987 - 1112
Target Start/End: Complemental strand, 45457695 - 45457569
Alignment:
Q  987 gggtgatttagggtcaattttgaaccaaag-tcac-cctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 1084  Q
    |||||||||||||||||||||||  ||||  |||| ||||||| || ||||||||||||||  |||| ||||| ||||||| |  ||||||| |||||||    
T  45457695 gggtgatttagggtcaattttgacgcaaaaatcactcctccgaattgtttttccttctatcttaattgaataagtgatttc-acatattttatgttttct 45457597  T
Q  1085 ttcgtttatttttgtgatttcgtcgtct 1112  Q
    ||||||| |||| |||||||| ||||||    
T  45457596 ttcgtttgttttcgtgatttcatcgtct 45457569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 986 - 1112
Target Start/End: Original strand, 32740733 - 32740861
Alignment:
Q  986 agggtgatttagggtcaattttgaaccaaag--tcaccctc-cgagttatttttccttctatccaaattaaataattgatttccatgtattttaagtttt 1082  Q
    |||||||||||| ||||||||||| | |||   |||||| | ||| || ||||||||||||||| |||| ||||| ||||||| |  ||||||  |||||    
T  32740733 agggtgatttagagtcaattttgaccaaaaaaatcaccccctcgaattgtttttccttctatcctaattgaataagtgatttc-acatattttttgtttt 32740831  T
Q  1083 ctttcgtttatttttgtgatttcgtcgtct 1112  Q
    |||||||| |||||||||||||||||||||    
T  32740832 ctttcgttgatttttgtgatttcgtcgtct 32740861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 987 - 1112
Target Start/End: Original strand, 5684347 - 5684473
Alignment:
Q  987 gggtgatttagggtcaattttga-accaaagtcacc-ctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 1084  Q
    |||||||||||||||||||||||  | ||| ||||| |||||| || |||||| |||||||| |||| ||||| |||||| ||  ||||||  |||||||    
T  5684347 gggtgatttagggtcaattttgacgcaaaaatcacctctccgaattgtttttcattctatcctaattgaataagtgattt-cacatattttctgttttct 5684445  T
Q  1085 ttcgtttatttttgtgatttcgtcgtct 1112  Q
    |||||||  |||||||||||||| ||||    
T  5684446 ttcgtttgcttttgtgatttcgttgtct 5684473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 987 - 1112
Target Start/End: Original strand, 5709397 - 5709523
Alignment:
Q  987 gggtgatttagggtcaattttga-accaaagtcacc-ctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 1084  Q
    |||||||||||||||||||||||  | ||| ||||| |||||| || |||||| |||||||| |||| ||||| |||||| ||  ||||||  |||||||    
T  5709397 gggtgatttagggtcaattttgacgcaaaaatcacctctccgaattgtttttcattctatcctaattgaataagtgattt-cacatattttctgttttct 5709495  T
Q  1085 ttcgtttatttttgtgatttcgtcgtct 1112  Q
    |||||||  |||||||||||||| ||||    
T  5709496 ttcgtttgcttttgtgatttcgttgtct 5709523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 990 - 1112
Target Start/End: Complemental strand, 17509339 - 17509217
Alignment:
Q  990 tgatttagggtcaattttgaaccaaag-tcaccctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcg 1088  Q
    |||||||||||||||||||| | |||  ||||||||||| |||||||||||| ||||| |||| ||||| |||||| ||  ||||||  |||| ||||      
T  17509339 tgatttagggtcaattttgaccaaaaaatcaccctccgaattatttttccttttatcctaattgaataagtgattt-cacatattttctgtttcctttaa 17509241  T
Q  1089 tttatttttgtgatttcgtcgtct 1112  Q
    ||| |||||||||||| |||||||    
T  17509240 tttgtttttgtgattttgtcgtct 17509217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 990 - 1112
Target Start/End: Original strand, 17543875 - 17543997
Alignment:
Q  990 tgatttagggtcaattttgaaccaaag-tcaccctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcg 1088  Q
    |||||||||||||||||||| | |||  ||||||||||| |||||||||||| ||||| |||| ||||| |||||| ||  ||||||  |||| ||||      
T  17543875 tgatttagggtcaattttgaccaaaaaatcaccctccgaattatttttccttttatcctaattgaataagtgattt-cacatattttctgtttcctttaa 17543973  T
Q  1089 tttatttttgtgatttcgtcgtct 1112  Q
    ||| |||||||||||| |||||||    
T  17543974 tttgtttttgtgattttgtcgtct 17543997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 1023 - 1113
Target Start/End: Original strand, 10094461 - 10094550
Alignment:
Q  1023 tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtctt 1113  Q
    ||||| || ||||||||| ||||| |||| ||||| ||||||| |  ||||||  |||||||||||||| |||||||||||||||||||||    
T  10094461 tccgaattgtttttccttttatcctaattgaataagtgatttc-acatattttctgttttctttcgtttgtttttgtgatttcgtcgtctt 10094550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 990 - 1112
Target Start/End: Original strand, 11833003 - 11833127
Alignment:
Q  990 tgatttagggtcaattttgaaccaaag-tcaccc--tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttcttt 1086  Q
    ||||||| |||||||||||| |||||  ||||||  ||||| || ||||||||||| ||| |||| ||||| ||||||| |  ||||||  || ||||||    
T  11833003 tgatttatggtcaattttgacccaaaaatcaccccctccgaattgtttttccttctttcctaattgaataagtgatttc-acatattttctgtattcttt 11833101  T
Q  1087 cgtttatttttgtgatttcgtcgtct 1112  Q
    ||||| ||||||||||||||||||||    
T  11833102 cgtttgtttttgtgatttcgtcgtct 11833127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 1023 - 1112
Target Start/End: Complemental strand, 14657924 - 14657834
Alignment:
Q  1023 tccgagttatttttccttctatccaaattaaataattgatttc-catgtattttaagttttctttcgtttatttttgtgatttcgtcgtct 1112  Q
    |||||| | ||||||||||||||  |||| ||||| | ||||| ||| |||||| |||||||||| |||| ||||||||||||||||||||    
T  14657924 tccgagctgtttttccttctatcttaattgaataagttatttcacatatattttcagttttcttttgtttgtttttgtgatttcgtcgtct 14657834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 987 - 1112
Target Start/End: Original strand, 21603445 - 21603570
Alignment:
Q  987 gggtgatttagggtcaattttgaaccaaagtcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctt 1085  Q
    ||||||||||||||||||||||| | |||  ||||| || || || ||||||||||||||| |||| ||||| ||||||| |  |||| |  ||||||||    
T  21603445 gggtgatttagggtcaattttgaccaaaaagcacccctctgaattgtttttccttctatcctaattgaataagtgatttc-acatattctctgttttctt 21603543  T
Q  1086 tcgtttatttttgtgatttcgtcgtct 1112  Q
    || ||| |||||||||||| |||||||    
T  21603544 tcctttgtttttgtgattttgtcgtct 21603570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 988 - 1112
Target Start/End: Complemental strand, 42603907 - 42603782
Alignment:
Q  988 ggtgatttagggtcaattttga-accaaagtca-ccctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctt 1085  Q
    ||||||||| ||||||||||||  | ||| ||| |||||||| || |||||| |||||||  |||| ||||| |||||| ||  ||||||  ||||||||    
T  42603907 ggtgatttatggtcaattttgactcaaaaatcacccctccgaattgtttttcattctatcataattgaataagtgattt-cacatattttctgttttctt 42603809  T
Q  1086 tcgtttatttttgtgatttcgtcgtct 1112  Q
    |||||| ||||||||||||||||||||    
T  42603808 tcgtttgtttttgtgatttcgtcgtct 42603782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 963 - 1103
Target Start/End: Original strand, 29352205 - 29352345
Alignment:
Q  963 ttcttcttattgtctattgaagaagggtgatttagggtcaattttgaaccaaagtca-ccctccgagttatttttccttctatccaaattaaataattga 1061  Q
    |||||||| ||||| || ||||| |||||||||| | | ||||||||   | | ||| |||||||||||||||||  || ||||| |||||||||| |||    
T  29352205 ttcttcttcttgtcaatcgaagatgggtgatttatgattaattttgacttagaatcatccctccgagttattttta-ttatatcctaattaaataagtga 29352303  T
Q  1062 tttccatgtattttaagttttctttcgtttatttttgtgatt 1103  Q
    ||||||  |||| | ||||||||||||||| |||| ||||||    
T  29352304 tttccacatattctcagttttctttcgtttgttttcgtgatt 29352345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 986 - 1113
Target Start/End: Complemental strand, 39533115 - 39532987
Alignment:
Q  986 agggtgatttagggtcaattttgaaccaaag-tcacc-ctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttc 1083  Q
    |||||||||||||||||||||||| |||||  ||| | ||| || || ||||||||||||||  |||| ||||| ||||||| |  ||||||  ||||||    
T  39533115 agggtgatttagggtcaattttgacccaaaaatcatctctctgaattgtttttccttctatcttaattgaataagtgatttc-acatattttctgttttc 39533017  T
Q  1084 tttcgtttatttttgtgatttcgtcgtctt 1113  Q
    ||| |||| |||| ||||||||||||||||    
T  39533016 ttttgtttgttttcgtgatttcgtcgtctt 39532987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 987 - 1112
Target Start/End: Original strand, 27535438 - 27535566
Alignment:
Q  987 gggtgatttagggtcaattttgaacc-aaagtcaccc-tccgagttatttttccttctatccaaattaaataattgatttc-catgtattttaagttttc 1083  Q
    ||||||||||||||||||||| | || ||| |||||| ||||| || ||||||||||||| | ||||  |||| ||||||| ||| ||||||  |||||     
T  27535438 gggtgatttagggtcaatttttatccaaaaatcacccatccgaattgtttttccttctattctaattgtataagtgatttcacatatattttctgtttta 27535537  T
Q  1084 tttcgtttatttttgtgatttcgtcgtct 1112  Q
    |||| ||| |||||||||||| |||||||    
T  27535538 tttcatttgtttttgtgattttgtcgtct 27535566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 987 - 1112
Target Start/End: Original strand, 41287939 - 41288066
Alignment:
Q  987 gggtgatttagggtcaattttgaaccaa-agtcaccc-tccgagtta-tttttccttctatccaaattaaataattgatttccatgtattttaagttttc 1083  Q
    ||||||||||||||||||||||| |||| | |||||| ||||||| | ||||||||||||||| |||| ||||  |||||| ||  ||||||  |||| |    
T  41287939 gggtgatttagggtcaattttgacccaataatcacccatccgagtgattttttccttctatcctaattgaataggtgattt-cacatattttctgtttcc 41288037  T
Q  1084 tttcgtttatttttgtgatttcgtcgtct 1112  Q
    |||||||| |||| ||||||| |||||||    
T  41288038 tttcgtttgttttagtgattttgtcgtct 41288066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 987 - 1112
Target Start/End: Complemental strand, 1281276 - 1281150
Alignment:
Q  987 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 1084  Q
    ||||||||||||||| ||||||| | |||  |||||| ||||| || |||||| || ||| | |||| ||||| ||||||| |  ||||||  |||||||    
T  1281276 gggtgatttagggtccattttgaccaaaaaatcacccatccgaattgtttttcattatattctaattgaataagtgatttc-acatattttttgttttct 1281178  T
Q  1085 ttcgtttatttttgtgatttcgtcgtct 1112  Q
    ||||||| ||||||||||||||||||||    
T  1281177 ttcgtttgtttttgtgatttcgtcgtct 1281150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 987 - 1112
Target Start/End: Complemental strand, 17473862 - 17473736
Alignment:
Q  987 gggtgatttagggtcaattttgaac-caaagtca-ccctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 1084  Q
    ||||||||||||||||||||||| |  ||| ||| |||||||| || ||||||||| ||||| |||| ||||| |||||| ||  ||||||  |||| ||    
T  17473862 gggtgatttagggtcaattttgaccaaaaaatcacccctccgaattgtttttccttttatcctaattgaataagtgattt-cacatattttctgtttcct 17473764  T
Q  1085 ttcgtttatttttgtgatttcgtcgtct 1112  Q
    ||| ||| |||||||||||| |||||||    
T  17473763 ttcatttgtttttgtgattttgtcgtct 17473736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 987 - 1112
Target Start/End: Original strand, 17579352 - 17579478
Alignment:
Q  987 gggtgatttagggtcaattttgaac-caaagtca-ccctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 1084  Q
    ||||||||||||||||||||||| |  ||| ||| |||||||| || ||||||||| ||||| |||| ||||| |||||| ||  ||||||  |||| ||    
T  17579352 gggtgatttagggtcaattttgaccaaaaaatcacccctccgaattgtttttccttttatcctaattgaataagtgattt-cacatattttctgtttcct 17579450  T
Q  1085 ttcgtttatttttgtgatttcgtcgtct 1112  Q
    ||| ||| |||||||||||| |||||||    
T  17579451 ttcatttgtttttgtgattttgtcgtct 17579478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 987 - 1113
Target Start/End: Complemental strand, 48304534 - 48304405
Alignment:
Q  987 gggtgatttagggtcaattttgaacc-aaagtcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 1084  Q
    ||||||||||||||||||||||| || ||| |||||| ||||| ||  ||||||| |||||| |||| ||||| |||||| |||  |||||  |||||||    
T  48304534 gggtgatttagggtcaattttgacccaaaaatcacccatccgaattgcttttcctgctatcctaattgaataagtgattt-catagattttctgttttct 48304436  T
Q  1085 ttcgtt--tatttttgtgatttcgtcgtctt 1113  Q
    || |||  | |||||||||||||||||||||    
T  48304435 ttagtttgtttttttgtgatttcgtcgtctt 48304405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 987 - 1112
Target Start/End: Original strand, 3266364 - 3266496
Alignment:
Q  987 gggtgatttagggtcaattttgaaccaa-agtca-ccctccgagttattttt------ccttctatccaaattaaataattgatttccatgtattttaag 1078  Q
    |||||||||| |||||||||||| |||| | ||| ||||||||||| |||||      |||||||||| |||| ||||| ||||||| |  ||||||  |    
T  3266364 gggtgatttatggtcaattttgatccaataatcatccctccgagttgttttttttcttccttctatcctaattgaataagtgatttc-acatattttctg 3266462  T
Q  1079 ttttctttcgtttatttttgtgatttcgtcgtct 1112  Q
    ||| |||||||||||||||||||||| |||||||    
T  3266463 tttcctttcgtttatttttgtgattttgtcgtct 3266496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 1032 - 1108
Target Start/End: Complemental strand, 15674704 - 15674629
Alignment:
Q  1032 tttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtc 1108  Q
    |||||||| |||||| |||| ||||| ||||||| |  ||||||  |||||||||||||| ||||||||||||||||    
T  15674704 tttttcctcctatcctaattgaataagtgatttc-acatattttctgttttctttcgtttgtttttgtgatttcgtc 15674629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 1032 - 1110
Target Start/End: Original strand, 21990691 - 21990768
Alignment:
Q  1032 tttttccttctatccaaattaaataattgatttc-catgtattttaagttttctttcgtttatttttgtgatttcgtcgt 1110  Q
    |||||||| |||||| |||| ||||| ||||||| ||| |||| |  |||||||||||||| ||||||||||||||||||    
T  21990691 tttttcctgctatcctaattgaataagtgatttcacatatattct--gttttctttcgtttgtttttgtgatttcgtcgt 21990768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 1025 - 1112
Target Start/End: Complemental strand, 24320322 - 24320236
Alignment:
Q  1025 cgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtct 1112  Q
    |||||| ||||||||||||||  |||| ||||| ||||||| |  ||||||  ||||||||| |||| ||||||||||||| ||||||    
T  24320322 cgagttgtttttccttctatcttaatttaataagtgatttc-acatattttttgttttcttttgtttgtttttgtgatttcatcgtct 24320236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 1023 - 1113
Target Start/End: Original strand, 2622612 - 2622701
Alignment:
Q  1023 tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtctt 1113  Q
    ||||| || ||||||||||||||  |||| ||||| | ||||| |  ||||||  |||||||| ||||| |||||||||||||||||||||    
T  2622612 tccgaattgtttttccttctatcttaattgaataagtaatttc-agatattttctgttttcttgcgtttgtttttgtgatttcgtcgtctt 2622701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 1078 - 1112
Target Start/End: Complemental strand, 36719599 - 36719565
Alignment:
Q  1078 gttttctttcgtttatttttgtgatttcgtcgtct 1112  Q
    |||||||||||||| ||||||||||||||||||||    
T  36719599 gttttctttcgtttgtttttgtgatttcgtcgtct 36719565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 1032 - 1106
Target Start/End: Original strand, 42644705 - 42644778
Alignment:
Q  1032 tttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcg 1106  Q
    ||||||||||||||| |||| ||||| ||||||| |  |||| |  |||||||||||||| ||||||||||||||    
T  42644705 tttttccttctatcctaattgaataagtgatttc-acatattctctgttttctttcgtttgtttttgtgatttcg 42644778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 989 - 1104
Target Start/End: Original strand, 4028168 - 4028281
Alignment:
Q  989 gtgatttagggtcaattttgaaccaaagtcaccctccgagttatttttccttctatccaaattaaataattga-tttccatgtattttaagttttctttc 1087  Q
    |||||||||||| |||||||| ||||| |||||  |||| ||||||||| |||| |   | |||||||| ||| ||| ||| ||||||||||||||||||    
T  4028168 gtgatttagggttaattttgacccaaaatcacc--ccgacttatttttctttctcttttagttaaataagtgatttttcatatattttaagttttctttc 4028265  T
Q  1088 gtttatttttgtgattt 1104  Q
      || ||||||||||||    
T  4028266 -attgtttttgtgattt 4028281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 68; Significance: 9e-30; HSPs: 35)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 9e-30
Query Start/End: Original strand, 962 - 1112
Target Start/End: Complemental strand, 12717280 - 12717130
Alignment:
Q  962 tttcttcttattgtctattgaagaagggtgatttagggtcaattttgaaccaaagtcaccc-tccgagttatttttccttctatccaaattaaataattg 1060  Q
    ||||||||| ||||||||||||  ||| |||||||| ||||||||||| ||||| ||| || ||||| || ||||| ||||||||| |||||||||| ||    
T  12717280 tttcttcttcttgtctattgaaagagg-tgatttagagtcaattttgacccaaaatcatccgtccgacttgttttttcttctatcctaattaaataagtg 12717182  T
Q  1061 atttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtct 1112  Q
    |||||||  |||||| ||||||||||||||| ||||||||||||| ||||||    
T  12717181 atttccacatattttcagttttctttcgtttgtttttgtgatttcttcgtct 12717130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 68; E-Value: 9e-30
Query Start/End: Original strand, 918 - 1112
Target Start/End: Complemental strand, 22049611 - 22049417
Alignment:
Q  918 tttttctctcgcttctcttcttctcaaaccttaaccgtcggccatttcttcttattgtctattgaagaagggtgatttagggtcaattttgaaccaaagt 1017  Q
    |||||||||| ||||| | ||||||||||| || | || | || ||||||||| |||||||  ||| |||||||||||||||| |||||||| ||||| |    
T  22049611 tttttctctctcttctttccttctcaaaccgtagc-gtagcccctttcttcttcttgtctaccgaacaagggtgatttagggttaattttgacccaaaat 22049513  T
Q  1018 caccctc-cgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtct 1112  Q
    ||||||  ||| || ||||||||||||||| |||| ||||| |||||||||  |||||| ||||||||||| ||||||||| || |||||| ||||    
T  22049512 caccctttcgaattgtttttccttctatcctaattgaataagtgatttccacatattttcagttttctttcatttatttttatggtttcgttgtct 22049417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 923 - 1112
Target Start/End: Original strand, 22757015 - 22757202
Alignment:
Q  923 ctctcgcttctcttcttctcaaaccttaaccgtcggccatttcttcttattgtctattgaagaagggtgatttagggtcaattttgaaccaaag-tcacc 1021  Q
    ||||| ||||||| ||||||||||| || |||||  || ||||||||| || |   ||  ||| |||||||||||||||||||||||  ||||  |||||    
T  22757015 ctctctcttctctccttctcaaaccctagccgtcacccttttcttcttcttct---tttcagaggggtgatttagggtcaattttgactcaaaaatcacc 22757111  T
Q  1022 -ctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtct 1112  Q
     |||||| || ||||||||||||||| |||| ||||| ||||||| |  ||||||| ||||| |||||||| ||||||||||||||||||||    
T  22757112 actccgaattgtttttccttctatcctaattgaataagtgatttc-acatattttatgttttttttcgtttgtttttgtgatttcgtcgtct 22757202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 53; E-Value: 8e-21
Query Start/End: Original strand, 1020 - 1112
Target Start/End: Original strand, 6881973 - 6882064
Alignment:
Q  1020 ccctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtct 1112  Q
    |||| |||||||||||||||||||||| |||||||||| |||||| ||  ||||||  |||||||||||||| ||||||||||||||||||||    
T  6881973 cccttcgagttatttttccttctatcctaattaaataagtgattt-cacatattttctgttttctttcgtttgtttttgtgatttcgtcgtct 6882064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 53; E-Value: 8e-21
Query Start/End: Original strand, 987 - 1113
Target Start/End: Original strand, 7060306 - 7060433
Alignment:
Q  987 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 1084  Q
    |||| |||||||||||||||| | |||||  |||||| ||||| || ||||||||||||||| |||| ||||| ||||||| |  ||||||| |||||||    
T  7060306 gggtaatttagggtcaattttaacccaaaaatcacccctccgaattgtttttccttctatcctaattgaataagtgatttc-acatattttatgttttct 7060404  T
Q  1085 ttcgtttatttttgtgatttcgtcgtctt 1113  Q
    ||||||| |||||||||||||||||||||    
T  7060405 ttcgtttgtttttgtgatttcgtcgtctt 7060433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 983 - 1112
Target Start/End: Complemental strand, 20400046 - 20399916
Alignment:
Q  983 agaagggtgatttagggtcaattttgaaccaaag-tcaccctcc-gagttatttttccttctatccaaattaaataattgatttccatgtattttaagtt 1080  Q
    ||||||| ||||||||||||||||||| |||||  |||||| || || ||  |||| ||||||||| |||| ||||| ||||||| || ||||||  |||    
T  20400046 agaagggcgatttagggtcaattttgacccaaaaatcacccacccgaattgctttttcttctatcctaattgaataagtgatttc-atatattttctgtt 20399948  T
Q  1081 ttctttcgtttatttttgtgatttcgtcgtct 1112  Q
    ||||||||||||||||||||||||||||||||    
T  20399947 ttctttcgtttatttttgtgatttcgtcgtct 20399916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 987 - 1112
Target Start/End: Original strand, 27394812 - 27394938
Alignment:
Q  987 gggtgatttagggtcaattttgaaccaaag-tcaccct-ccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 1084  Q
    ||||||||||||||||||||||| |||||  ||||||| |||  |||||||||||||||||| |||| ||||| | ||||  |  ||||||| |||||||    
T  27394812 gggtgatttagggtcaattttgacccaaaaatcacccttccggattatttttccttctatcctaattgaataagtaatttaaaa-tattttatgttttct 27394910  T
Q  1085 ttcgtttatttttgtgatttcgtcgtct 1112  Q
    ||||||| ||||||||||||||||||||    
T  27394911 ttcgtttgtttttgtgatttcgtcgtct 27394938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 987 - 1112
Target Start/End: Complemental strand, 29268916 - 29268790
Alignment:
Q  987 gggtgatttagggtcaattttgaacc-aaagtcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 1084  Q
    |||||||||| |||||||||||| || ||| |||||| |||||||| ||||||||| ||||| |||| ||||| ||||||| |  ||||||  |||||||    
T  29268916 gggtgatttaaggtcaattttgaccctaaaatcacccctccgagttgtttttccttttatcctaattgaataagtgatttc-acatattttctgttttct 29268818  T
Q  1085 ttcgtttatttttgtgatttcgtcgtct 1112  Q
    ||||||| ||||||||||||||||||||    
T  29268817 ttcgtttgtttttgtgatttcgtcgtct 29268790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 987 - 1112
Target Start/End: Complemental strand, 44757181 - 44757055
Alignment:
Q  987 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 1084  Q
    |||||||||| |||||||||||| |||||  |||||| | |||||| ||||||||||||||| |||| ||||| ||||||| |  ||||||| |||||||    
T  44757181 gggtgatttaaggtcaattttgacccaaaaatcacccattcgagttgtttttccttctatcctaattgaataagtgatttc-acatattttatgttttct 44757083  T
Q  1085 ttcgtttatttttgtgatttcgtcgtct 1112  Q
    ||||||| ||||| ||||||||||||||    
T  44757082 ttcgtttgtttttatgatttcgtcgtct 44757055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 990 - 1112
Target Start/End: Original strand, 13965545 - 13965668
Alignment:
Q  990 tgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctttc 1087  Q
    |||||||||||||||||||| |||||  |||||| | ||| || ||||||||||||||| |||| ||||| ||||||| |  |||| || ||||||||||    
T  13965545 tgatttagggtcaattttgacccaaaaatcaccccttcgaattgtttttccttctatcctaattgaataagtgatttc-acatattctatgttttctttc 13965643  T
Q  1088 gtttatttttgtgatttcgtcgtct 1112  Q
    |||| ||||||||||||||||||||    
T  13965644 gtttgtttttgtgatttcgtcgtct 13965668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 987 - 1113
Target Start/End: Original strand, 24825631 - 24825758
Alignment:
Q  987 gggtgatttagggtcaattttgaaccaaag-tcac-cctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 1084  Q
    |||||||||||| |||||||||| | |||  |||| |||||||||| ||||||||||||||| |||| ||||| ||||||| |  ||||||   ||||||    
T  24825631 gggtgatttaggatcaattttgacctaaaaatcactcctccgagttgtttttccttctatcctaattgaataagtgatttc-acatattttctattttct 24825729  T
Q  1085 ttcgtttatttttgtgatttcgtcgtctt 1113  Q
    ||||||| |||||||||||||||||||||    
T  24825730 ttcgtttgtttttgtgatttcgtcgtctt 24825758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 1021 - 1112
Target Start/End: Original strand, 50801235 - 50801325
Alignment:
Q  1021 cctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtct 1112  Q
    ||||||| |||||||||||| ||||| |||| ||||| ||||||| |  ||||||  |||||||||||||||||||||||||||||||||||    
T  50801235 cctccgaattatttttccttttatcctaattgaataagtgatttc-acatattttctgttttctttcgtttatttttgtgatttcgtcgtct 50801325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 988 - 1112
Target Start/End: Original strand, 5814330 - 5814455
Alignment:
Q  988 ggtgatttagggtcaattttgaaccaaag-tca-ccctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctt 1085  Q
    |||||||||||||||||||||| |||||  ||| |||||| |||| |||| |||||||||  |||| ||||| | ||||| |  |||||| |||||||||    
T  5814330 ggtgatttagggtcaattttgatccaaaaatcatccctccaagttgttttcccttctatcttaattgaataagttatttc-acatatttttagttttctt 5814428  T
Q  1086 tcgtttatttttgtgatttcgtcgtct 1112  Q
    |||||| ||||||||||||||||||||    
T  5814429 tcgtttgtttttgtgatttcgtcgtct 5814455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 962 - 1097
Target Start/End: Original strand, 3159000 - 3159136
Alignment:
Q  962 tttcttcttattgtctattgaagaagggtgatttagggtcaattttgaaccaaagtcaccct-ccgagttatttttccttctatccaaattaaataattg 1060  Q
    ||||||||| |||| ||| ||||| || |||||||||||||| ||| | ||||| ||||  | ||||||| ||||||||||||||  |||||||||| ||    
T  3159000 tttcttcttcttgtttatcgaagagggatgatttagggtcaacttttacccaaaatcactattccgagttgtttttccttctatcataattaaataagtg 3159099  T
Q  1061 atttccatgtattttaagttttctttcgtttattttt 1097  Q
    |||| ||  |||||| || |||||||||||| |||||    
T  3159100 attttcacatattttcagctttctttcgtttgttttt 3159136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 987 - 1112
Target Start/End: Original strand, 6911662 - 6911788
Alignment:
Q  987 gggtgatttagggtcaattttgaaccaaag-tcacc-ctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 1084  Q
    ||||||||||||||||||||||| |||||  ||||| |||||| || |||||||||||| |  |||| ||||| ||||||| |  ||||||  |||||||    
T  6911662 gggtgatttagggtcaattttgatccaaaaatcacctctccgatttgtttttccttctaccttaattgaataagtgatttc-acatattttctgttttct 6911760  T
Q  1085 ttcgtttatttttgtgatttcgtcgtct 1112  Q
    ||||||| ||||||||||||| ||||||    
T  6911761 ttcgtttgtttttgtgatttcttcgtct 6911788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 987 - 1112
Target Start/End: Complemental strand, 43244520 - 43244394
Alignment:
Q  987 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 1084  Q
    ||||||||||||||||||||||| |||||  |||||| || || || ||||||||||||||| |||| ||||| ||||||| |  ||||||   ||||||    
T  43244520 gggtgatttagggtcaattttgacccaaaaatcacccctctgaattgtttttccttctatcctaattgaataagtgatttc-acatattttcgattttct 43244422  T
Q  1085 ttcgtttatttttgtgatttcgtcgtct 1112  Q
    ||||||| |||||||||||| |||||||    
T  43244421 ttcgtttgtttttgtgattttgtcgtct 43244394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 987 - 1107
Target Start/End: Complemental strand, 478150 - 478030
Alignment:
Q  987 gggtgatttagggtcaattttgaaccaaag-tcaccctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctt 1085  Q
    |||||||||| |||||||||||| |||||  ||||| ||||| || ||||||||| ||||| |||| ||||| ||||||  |  ||||||  |||| |||    
T  478150 gggtgatttatggtcaattttgacccaaaaatcaccatccgaattgtttttccttatatcctaattgaataagtgatttt-acatattttctgtttcctt 478052  T
Q  1086 tcgtttatttttgtgatttcgt 1107  Q
    ||||||||||||||||||||||    
T  478051 tcgtttatttttgtgatttcgt 478030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 987 - 1110
Target Start/End: Complemental strand, 24568852 - 24568728
Alignment:
Q  987 gggtgatttagggtcaattttgaaccaaag-tcaccct-ccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 1084  Q
    |||||||||||||| |||||||| |||||  ||||||| |||| |||||||||||||||||| |||| ||||| ||||||  |  |||| |  ||||| |    
T  24568852 gggtgatttagggtgaattttgacccaaaaatcacccttccgaattatttttccttctatcctaattgaataagtgattt-tacatattatctgttttat 24568754  T
Q  1085 ttcgtttatttttgtgatttcgtcgt 1110  Q
    ||||||| ||||||||||||||||||    
T  24568753 ttcgtttgtttttgtgatttcgtcgt 24568728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 1020 - 1112
Target Start/End: Complemental strand, 43493391 - 43493300
Alignment:
Q  1020 ccctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtct 1112  Q
    |||||||| || ||||||||||||||  |||| ||||| ||||||| |  ||||||  ||||||||| |||||||||||||||||||||||||    
T  43493391 ccctccgaattgtttttccttctatcttaattgaataagtgatttc-acatattttttgttttcttttgtttatttttgtgatttcgtcgtct 43493300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 987 - 1112
Target Start/End: Complemental strand, 394413 - 394287
Alignment:
Q  987 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 1084  Q
    ||||||||||||||||||||||| |||||  |||||| ||||| || ||||||||||||||| |||| ||||| |||||| ||  | ||||  | |||||    
T  394413 gggtgatttagggtcaattttgacccaaaaatcacccctccgaattgtttttccttctatcctaattcaataagtgattt-cacatcttttctgctttct 394315  T
Q  1085 ttcgtttatttttgtgatttcgtcgtct 1112  Q
    ||||||| ||| | ||||||||||||||    
T  394314 ttcgtttgtttctatgatttcgtcgtct 394287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 987 - 1112
Target Start/End: Complemental strand, 7861344 - 7861219
Alignment:
Q  987 gggtgatttagggtcaattttgaaccaaag-tcacc-ctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 1084  Q
    |||||||||||  |||||||||| |||||  ||||| ||| || |||||||||||||||||| |||||||||| |||||| ||  ||||||  ||||| |    
T  7861344 gggtgatttagaatcaattttgacccaaaaatcaccactctgaattatttttccttctatcctaattaaataagtgattt-cacatattttctgtttt-t 7861247  T
Q  1085 ttcgtttatttttgtgatttcgtcgtct 1112  Q
    ||| ||| ||||||||||||||||||||    
T  7861246 ttcatttgtttttgtgatttcgtcgtct 7861219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 987 - 1112
Target Start/End: Original strand, 30202020 - 30202146
Alignment:
Q  987 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 1084  Q
    |||||||||| |||||||||||| |||||  |||||| | | |||| ||||||||| ||||  |||| ||||| ||||||| |  ||||||  |||||||    
T  30202020 gggtgatttaaggtcaattttgatccaaaaatcaccccttctagttgtttttccttttatcttaattgaataagtgatttc-acatattttctgttttct 30202118  T
Q  1085 ttcgtttatttttgtgatttcgtcgtct 1112  Q
    ||||||| ||||||||||||||||||||    
T  30202119 ttcgtttgtttttgtgatttcgtcgtct 30202146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 929 - 1112
Target Start/End: Original strand, 25658091 - 25658275
Alignment:
Q  929 cttctcttcttctcaaaccttaaccgtcggccatttcttcttattgtctattgaagaagggtgatttagggtcaattttgaaccaaag-tcacc-ctccg 1026  Q
    ||||||| ||||||||||| || |||||  || ||||||||| || |   ||  ||| |||||||||||||| ||||||||  ||||  ||||| ||||     
T  25658091 cttctctccttctcaaaccctagccgtcacccttttcttcttcttcttctttttagaggggtgatttagggttaattttgactcaaaaatcacctctcca 25658190  T
Q  1027 agttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtct 1112  Q
    | || ||||||||||| ||| |||| ||||| ||||||| |  ||||||  |||||||||||| | ||||||||||||||||||||    
T  25658191 aattgtttttccttctttcctaatttaataagtgatttc-acatattttctgttttctttcgtatgtttttgtgatttcgtcgtct 25658275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 987 - 1112
Target Start/End: Original strand, 24100121 - 24100249
Alignment:
Q  987 gggtgatttagggtcaattttgaacc-aaagtcaccc-tccgagttatttttccttctatccaaattaaataattgatttc-catgtattttaagttttc 1083  Q
    |||||||||||| ||||||||||||| ||| | |||| ||||| || ||||||||||||||  |||| ||||| ||||||| ||| | || |  ||||||    
T  24100121 gggtgatttaggatcaattttgaaccaaaaattacccatccgaattgtttttccttctatcgtaattgaataagtgatttcacatattttctctgttttc 24100220  T
Q  1084 tttcgtttatttttgtgatttcgtcgtct 1112  Q
    |||||||| ||||||  ||||||||||||    
T  24100221 tttcgtttgtttttgcaatttcgtcgtct 24100249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 987 - 1113
Target Start/End: Complemental strand, 26742602 - 26742475
Alignment:
Q  987 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 1084  Q
    |||||||||||| |||||||||| |||||  |||||| ||||| || |||||| |||||||  |||| ||||| ||||||| |  ||||||  |||||||    
T  26742602 gggtgatttaggatcaattttgacccaaaaatcacccatccgaattgtttttctttctatcttaattgaataagtgatttc-acatattttctgttttct 26742504  T
Q  1085 ttcgtttatttttgtgatttcgtcgtctt 1113  Q
    ||||||| |||| ||||||| ||||||||    
T  26742503 ttcgtttgttttcgtgattttgtcgtctt 26742475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 992 - 1112
Target Start/End: Complemental strand, 7083950 - 7083829
Alignment:
Q  992 atttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgt 1089  Q
    |||||||||||||||||| |||||  |||||| |  || || ||||||||||||||  |||| ||||| ||||||| |  ||||||   |||||||||||    
T  7083950 atttagggtcaattttgatccaaaaatcacccctatgaattgtttttccttctatcataattgaataagtgatttc-acatattttctattttctttcgt 7083852  T
Q  1090 ttatttttgtgatttcgtcgtct 1112  Q
    || ||||||||||||||||||||    
T  7083851 ttgtttttgtgatttcgtcgtct 7083829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 987 - 1112
Target Start/End: Original strand, 42197535 - 42197662
Alignment:
Q  987 gggtgatttagggtcaattttga-accaaagtcaccctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaag--ttttc 1083  Q
    |||||||||||||| |||||||| |  ||| ||||  ||||| |||||||||||||||||| |||| ||||| ||| || || |||||||  |  ||||     
T  42197535 gggtgatttagggttaattttgacaaaaaaatcactttccgaattatttttccttctatcctaatttaataagtgactt-cacgtattttttgttttttt 42197633  T
Q  1084 tttcgtttatttttgtgatttcgtcgtct 1112  Q
    |||| ||| ||||||||||||||||||||    
T  42197634 tttcatttgtttttgtgatttcgtcgtct 42197662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 987 - 1065
Target Start/End: Original strand, 31521964 - 31522044
Alignment:
Q  987 gggtgatttagggtcaattttgaac-caaagtca-ccctccgagttatttttccttctatccaaattaaataattgatttc 1065  Q
    ||||||||||||||||||||||| |  ||| ||| |||||||| || ||||||||||||||| |||| ||||| |||||||    
T  31521964 gggtgatttagggtcaattttgacctaaaaatcacccctccgaattgtttttccttctatcctaattgaataagtgatttc 31522044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 987 - 1108
Target Start/End: Original strand, 51152107 - 51152228
Alignment:
Q  987 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 1084  Q
    |||||||||| ||||||| |||| |||||  |||||| ||||| || ||||||||||||||| |||| ||||| |||||| ||  ||||||  | |||||    
T  51152107 gggtgatttanggtcaatattgacccaaaaatcacccctccgaattgtttttccttctatcctaatttaataagtgattt-cacatattttctgctttct 51152205  T
Q  1085 ttcgtttatttttgtgatttcgtc 1108  Q
    |||||||  |||||||||||||||    
T  51152206 ttcgttt-gttttgtgatttcgtc 51152228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 987 - 1112
Target Start/End: Complemental strand, 11210452 - 11210326
Alignment:
Q  987 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 1084  Q
    ||||||||||||||||||||||  | |||  |||||| ||||| ||||||||||| | |||  |||| ||||| ||||||| |  |||||    ||||||    
T  11210452 gggtgatttagggtcaattttgccctaaaaatcacccctccgaattatttttcctcccatcataattgaataagtgatttc-acatatttactcttttct 11210354  T
Q  1085 ttcgtttatttttgtgatttcgtcgtct 1112  Q
    ||||||| ||||||||||||||||||||    
T  11210353 ttcgtttgtttttgtgatttcgtcgtct 11210326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 1033 - 1108
Target Start/End: Original strand, 26674402 - 26674476
Alignment:
Q  1033 ttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtc 1108  Q
    |||||||||||||  |||| ||||| ||||||| |  ||||||  |||||||||||||| ||||||||||||||||    
T  26674402 ttttccttctatcataattgaataagtgatttc-acatattttttgttttctttcgtttgtttttgtgatttcgtc 26674476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 1034 - 1096
Target Start/End: Original strand, 27090755 - 27090817
Alignment:
Q  1034 tttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttt 1096  Q
    ||||||||||||| |||  ||||| ||||||||| ||||||| | ||||||||||||| ||||    
T  27090755 tttccttctatcctaatcgaataagtgatttccacgtattttcatttttctttcgtttgtttt 27090817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 1078 - 1112
Target Start/End: Complemental strand, 36124396 - 36124362
Alignment:
Q  1078 gttttctttcgtttatttttgtgatttcgtcgtct 1112  Q
    |||||||||||||| ||||||||||||||||||||    
T  36124396 gttttctttcgtttgtttttgtgatttcgtcgtct 36124362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 1078 - 1112
Target Start/End: Complemental strand, 38944195 - 38944161
Alignment:
Q  1078 gttttctttcgtttatttttgtgatttcgtcgtct 1112  Q
    |||||||||||||| ||||||||||||||||||||    
T  38944195 gttttctttcgtttgtttttgtgatttcgtcgtct 38944161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 987 - 1113
Target Start/End: Original strand, 39837576 - 39837704
Alignment:
Q  987 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttcc-ttctatccaaattaaataattgatttccatgtattttaagttttc 1083  Q
    ||||||||||| ||||||||||| |||||  |||||| | ||| || ||||||| || ||||| |||| ||||| ||||||| |  ||||||  ||||||    
T  39837576 gggtgatttagcgtcaattttgacccaaaaatcaccccttcgatttttttttcccttttatcctaattgaataagtgatttc-acatattttctgttttc 39837674  T
Q  1084 tttcgtttatttttgtgatttcgtcgtctt 1113  Q
    |||||||| ||||| |||||||||| ||||    
T  39837675 tttcgtttgtttttttgatttcgtcatctt 39837704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 66; Significance: 1e-28; HSPs: 33)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 962 - 1110
Target Start/End: Complemental strand, 17767715 - 17767566
Alignment:
Q  962 tttcttcttattgtctattgaagaagggtgatttagggtcaattttgaaccaaagtcaccc-tccgagttatttttccttctatccaaattaaataattg 1060  Q
    ||||||||| |||||||  ||||| ||||||||||| ||||||||||| ||| | |||||| | |||||| ||||||||| ||||| |||||||||| ||    
T  17767715 tttcttcttcttgtctaccgaagatgggtgatttagagtcaattttgacccagaatcaccccttcgagttgtttttccttatatcctaattaaataagtg 17767616  T
Q  1061 atttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgt 1110  Q
    |||||||  |||||| ||||||||||| |||  |||||||||||||||||    
T  17767615 atttccacatattttcagttttctttcatttgattttgtgatttcgtcgt 17767566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 987 - 1112
Target Start/End: Original strand, 27095687 - 27095813
Alignment:
Q  987 gggtgatttagggtcaattttgaac-caaagtca-ccctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 1084  Q
    ||||||||||||||||||||||| |  ||| ||| ||||||||||| ||||||||||||||| |||| ||||| |||||| ||  ||||||  |||||||    
T  27095687 gggtgatttagggtcaattttgacctaaaaatcacccctccgagttgtttttccttctatcctaattgaataagtgattt-cacatattttttgttttct 27095785  T
Q  1085 ttcgtttatttttgtgatttcgtcgtct 1112  Q
    ||||||| ||||||||||||||||||||    
T  27095786 ttcgtttgtttttgtgatttcgtcgtct 27095813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 53; E-Value: 8e-21
Query Start/End: Original strand, 987 - 1113
Target Start/End: Original strand, 44942267 - 44942394
Alignment:
Q  987 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 1084  Q
    |||||||||| |||||||||||| |||||  |||||| |||||||| ||||| ||||||||| |||| ||||| ||||||| |  ||||||| |||||||    
T  44942267 gggtgatttatggtcaattttgacccaaaaatcacccctccgagttgttttttcttctatcctaattgaataagtgatttc-acatattttatgttttct 44942365  T
Q  1085 ttcgtttatttttgtgatttcgtcgtctt 1113  Q
    || |||| |||||||||||||||||||||    
T  44942366 tttgtttgtttttgtgatttcgtcgtctt 44942394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 987 - 1112
Target Start/End: Complemental strand, 20561271 - 20561145
Alignment:
Q  987 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 1084  Q
    ||||||||||||||||||||||| |||||  |||||| ||||| || |||||||||||||||||||  ||||| || |||| |  ||||||  |||||||    
T  20561271 gggtgatttagggtcaattttgacccaaaaatcacccctccgaattgtttttccttctatccaaatcgaataagtggtttc-acatattttctgttttct 20561173  T
Q  1085 ttcgtttatttttgtgatttcgtcgtct 1112  Q
    ||||||| ||||||||||||||||||||    
T  20561172 ttcgtttgtttttgtgatttcgtcgtct 20561145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 987 - 1112
Target Start/End: Original strand, 22597117 - 22597243
Alignment:
Q  987 gggtgatttagggtcaattttgaaccaaag-tca-ccctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 1084  Q
    |||||||||| |||||||||||| |||||  ||| ||||||||||| ||||||||||||||| |||||||||| |||||| ||  ||||||  |||||||    
T  22597117 gggtgatttaaggtcaattttgacccaaaaatcatccctccgagttgtttttccttctatcctaattaaataagtgattt-cacatattttttgttttct 22597215  T
Q  1085 ttcgtttatttttgtgatttcgtcgtct 1112  Q
    ||||||| ||||| |||||| |||||||    
T  22597216 ttcgtttgtttttatgattttgtcgtct 22597243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 987 - 1112
Target Start/End: Complemental strand, 43474267 - 43474141
Alignment:
Q  987 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 1084  Q
    ||||||||||||||||||||||| |||||  |||||| ||||| || ||||||||||||||| |||| ||||| ||||||| |   |||||  |||||||    
T  43474267 gggtgatttagggtcaattttgacccaaaaatcacccatccgaattgtttttccttctatcctaattgaataagtgatttc-acaaattttctgttttct 43474169  T
Q  1085 ttcgtttatttttgtgatttcgtcgtct 1112  Q
    ||||||| ||||||||||||||||||||    
T  43474168 ttcgtttgtttttgtgatttcgtcgtct 43474141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 987 - 1112
Target Start/End: Original strand, 5754270 - 5754396
Alignment:
Q  987 gggtgatttagggtcaattttgaaccaaag-tca-ccctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 1084  Q
    ||||||||||||||||||||||| |||||  ||| |||||||| || ||||||||||||||| | || ||||| ||||||| |  ||||||  |||||||    
T  5754270 gggtgatttagggtcaattttgacccaaaaatcatccctccgaattgtttttccttctatcctagttgaataaatgatttc-acatattttttgttttct 5754368  T
Q  1085 ttcgtttatttttgtgatttcgtcgtct 1112  Q
    ||| ||| ||||||||||||||||||||    
T  5754369 ttcatttgtttttgtgatttcgtcgtct 5754396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 987 - 1112
Target Start/End: Original strand, 33012059 - 33012185
Alignment:
Q  987 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 1084  Q
    ||||||||||||||||||||||| |||||  |||| | ||||| || ||||||||||||| | |||| ||||| ||||||| |  |||||| |||||| |    
T  33012059 gggtgatttagggtcaattttgacccaaaaatcactcatccgaattgtttttccttctattctaattgaataagtgatttc-acatattttcagttttgt 33012157  T
Q  1085 ttcgtttatttttgtgatttcgtcgtct 1112  Q
    ||||||| ||||||||||||||||||||    
T  33012158 ttcgtttgtttttgtgatttcgtcgtct 33012185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 988 - 1112
Target Start/End: Original strand, 25067835 - 25067960
Alignment:
Q  988 ggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctt 1085  Q
    |||||||||||||||||||||| |||||  |||||| ||||| || |||||||||||||   |||| ||||| ||||||| |  ||||||  ||||||||    
T  25067835 ggtgatttagggtcaattttgacccaaaaatcacccctccgatttgtttttccttctattttaattgaataagtgatttc-acatattttctgttttctt 25067933  T
Q  1086 tcgtttatttttgtgatttcgtcgtct 1112  Q
    |||||| ||||||||||||||||||||    
T  25067934 tcgtttctttttgtgatttcgtcgtct 25067960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 989 - 1104
Target Start/End: Complemental strand, 11798653 - 11798537
Alignment:
Q  989 gtgatttagggtcaattttgaaccaaagtcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctttc 1087  Q
    |||||||| |||||||||||| ||||| |||||| |||  |||  |||||||| ||||| |||||||||| | |||||||  |||||| ||||||||||     
T  11798653 gtgatttatggtcaattttgacccaaaatcacccctccatgttgcttttccttatatcctaattaaataagtaatttccacatatttttagttttctttt 11798554  T
Q  1088 gtttatttttgtgattt 1104  Q
    |||| ||||||||||||    
T  11798553 gtttgtttttgtgattt 11798537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 987 - 1112
Target Start/End: Original strand, 12704669 - 12704795
Alignment:
Q  987 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 1084  Q
    ||||||||||||||||||||||| |||||  |||||| | ||| || ||||||||| ||||| |||| ||||| ||||||| |  ||||||  |||||||    
T  12704669 gggtgatttagggtcaattttgacccaaaaatcaccccttcgaattgtttttccttatatcctaattgaataagtgatttc-acatattttctgttttct 12704767  T
Q  1085 ttcgtttatttttgtgatttcgtcgtct 1112  Q
    ||||||| |||||||||||| |||||||    
T  12704768 ttcgtttgtttttgtgattttgtcgtct 12704795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 987 - 1108
Target Start/End: Original strand, 15919856 - 15919977
Alignment:
Q  987 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 1084  Q
    ||||||||||| ||||||||||| |||||  |||||| |||||||| ||||||||||||||| |||| ||||| |||||| ||  |||||| |  |||||    
T  15919856 gggtgatttagagtcaattttgacccaaaaatcacccctccgagttgtttttccttctatcctaattgaataaatgattt-cacatattttca-atttct 15919953  T
Q  1085 ttcgtttatttttgtgatttcgtc 1108  Q
    ||||||| ||||||||||||||||    
T  15919954 ttcgtttgtttttgtgatttcgtc 15919977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 1032 - 1110
Target Start/End: Complemental strand, 6431480 - 6431402
Alignment:
Q  1032 tttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgt 1110  Q
    ||||||||| ||| | |||||||||| |||||||||  |||||| |||||||||| |||| ||||||||||||||||||    
T  6431480 tttttccttatattctaattaaataagtgatttccacatattttcagttttcttttgtttgtttttgtgatttcgtcgt 6431402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 1022 - 1108
Target Start/End: Complemental strand, 13740762 - 13740677
Alignment:
Q  1022 ctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtc 1108  Q
    |||||| || ||||||||||||||| |||| ||||| ||||||| || ||||||  |||||||||||||| ||||||||||||||||    
T  13740762 ctccgaattgtttttccttctatcctaattgaataagtgatttc-atatattttctgttttctttcgtttgtttttgtgatttcgtc 13740677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 987 - 1112
Target Start/End: Complemental strand, 11937998 - 11937871
Alignment:
Q  987 gggtgatttagggtcaattttgaacc-aaagtca-ccctccgagttatttttcc-ttctatccaaattaaataattgatttccatgtattttaagttttc 1083  Q
    ||||||||||||||||||||||| || ||| ||| |||||||| || ||||||| |||||||| |||| ||||| |||||| ||  ||||||  ||||||    
T  11937998 gggtgatttagggtcaattttgacccaaaaatcacccctccgaattgtttttcctttctatcctaattgaataagtgattt-cacatattttttgttttc 11937900  T
Q  1084 tttcgtttatttttgtgatttcgtcgtct 1112  Q
    ||||||| |||||||| ||||| ||||||    
T  11937899 tttcgttgatttttgtaatttcttcgtct 11937871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 987 - 1112
Target Start/End: Complemental strand, 38535444 - 38535318
Alignment:
Q  987 gggtgatttagggtcaattttgaaccaaa--gtcaccctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 1084  Q
    ||||||||||||||||||||||| |||||  |   ||||  || || ||||||||||||||  |||| ||||| ||||||| |  ||||||  |||||||    
T  38535444 gggtgatttagggtcaattttgacccaaaaagcacccctttgaattttttttccttctatcataattgaataagtgatttc-acatattttctgttttct 38535346  T
Q  1085 ttcgtttatttttgtgatttcgtcgtct 1112  Q
    ||||||| ||||||||||||||||||||    
T  38535345 ttcgtttgtttttgtgatttcgtcgtct 38535318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 1050 - 1112
Target Start/End: Complemental strand, 11581203 - 11581141
Alignment:
Q  1050 ttaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtct 1112  Q
    |||||||| |||||| ||| |||||| |||||||||| |||| ||||||||||||||||||||    
T  11581203 ttaaataagtgattttcatatatttttagttttctttggtttgtttttgtgatttcgtcgtct 11581141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 1020 - 1114
Target Start/End: Complemental strand, 34416865 - 34416772
Alignment:
Q  1020 ccctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtcttg 1114  Q
    |||||||| || ||||||||| ||||| |||| ||||| ||||||| |  |||||| |||||| ||| |||| ||||||||||||||||||||||    
T  34416865 ccctccgaattgtttttccttatatcctaattgaataagtgatttc-acatattttcagtttttttttgtttgtttttgtgatttcgtcgtcttg 34416772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 1032 - 1110
Target Start/End: Original strand, 35333534 - 35333611
Alignment:
Q  1032 tttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgt 1110  Q
    |||||||| |||||| |||| ||||| ||||||| |  ||||||  |||||||||||||||||||||||||||||||||    
T  35333534 tttttcctgctatcctaattgaataagtgatttc-acatattttctgttttctttcgtttatttttgtgatttcgtcgt 35333611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 1020 - 1112
Target Start/End: Original strand, 4739346 - 4739437
Alignment:
Q  1020 ccctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtct 1112  Q
    ||||||||||| |||||||||| |||| |||||||||| | |||| ||  ||||||  ||||| || ||||| ||||||||||||||||||||    
T  4739346 ccctccgagttgtttttccttccatcctaattaaataagtaattt-cacatattttctgtttttttccgtttgtttttgtgatttcgtcgtct 4739437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 983 - 1112
Target Start/End: Complemental strand, 4604450 - 4604320
Alignment:
Q  983 agaagggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagtt 1080  Q
    |||||||||||||| |||||||||||| |||||  | || | | |||||| ||||||||||||| | |||| ||||| ||||||| |  ||||||  | |    
T  4604450 agaagggtgatttaaggtcaattttgacccaaaaattactcattcgagttgtttttccttctattctaattgaataagtgatttc-acatattttctgct 4604352  T
Q  1081 ttctttcgtttatttttgtgatttcgtcgtct 1112  Q
    |||||||| || ||||||||||||||||||||    
T  4604351 ttctttcgattgtttttgtgatttcgtcgtct 4604320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 987 - 1112
Target Start/End: Complemental strand, 9978808 - 9978682
Alignment:
Q  987 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 1084  Q
    |||||||||| |||||||||||| |||||  |||||| | | | || ||||||||| ||||  |||| ||||| ||||||| |  ||||||  |||||||    
T  9978808 gggtgatttaaggtcaattttgacccaaaaatcaccccttcaaattgtttttccttttatcttaattgaataaatgatttc-acatattttctgttttct 9978710  T
Q  1085 ttcgtttatttttgtgatttcgtcgtct 1112  Q
    ||||||| ||||||||||||||||||||    
T  9978709 ttcgtttgtttttgtgatttcgtcgtct 9978682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 1023 - 1112
Target Start/End: Complemental strand, 4426759 - 4426671
Alignment:
Q  1023 tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtct 1112  Q
    ||||| || ||||||||||||||| |||| ||||| ||||||| |  ||||||  |||||||||| ||| ||||| ||||||||||||||    
T  4426759 tccgatttgtttttccttctatcctaattgaataaatgatttc-acatattttctgttttctttcatttgtttttttgatttcgtcgtct 4426671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 990 - 1113
Target Start/End: Complemental strand, 31908952 - 31908828
Alignment:
Q  990 tgatttagggtcaattttgaaccaaag-tcaccct-ccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctttc 1087  Q
    |||||||| ||||||||||| |||||  ||||||| |||| || ||||| ||| ||||| | || ||||| ||||||| |  ||||||  ||||||||||    
T  31908952 tgatttagagtcaattttgatccaaaaatcacccttccgaattgttttttcttttatcctagttgaataagtgatttc-acatattttctgttttctttc 31908854  T
Q  1088 gtttatttttgtgatttcgtcgtctt 1113  Q
    |||| ||||| |||||||||||||||    
T  31908853 gtttgtttttctgatttcgtcgtctt 31908828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 1023 - 1112
Target Start/End: Original strand, 32314462 - 32314550
Alignment:
Q  1023 tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtct 1112  Q
    ||||| || ||||| ||||||||| |||| ||||| ||||||| |  ||||||  |||||||||||||| |||||||||||| |||||||    
T  32314462 tccgaattgttttttcttctatcctaattgaataaatgatttc-acatattttctgttttctttcgtttgtttttgtgattttgtcgtct 32314550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 987 - 1065
Target Start/End: Complemental strand, 17268263 - 17268183
Alignment:
Q  987 gggtgatttagggtcaattttgaaccaaag-tca-ccctccgagttatttttccttctatccaaattaaataattgatttc 1065  Q
    |||||||||| |||||||||||| |||||  ||| |||| |||||| ||||||||||||||| |||| ||||| |||||||    
T  17268263 gggtgatttatggtcaattttgacccaaaaatcatcccttcgagttgtttttccttctatcctaattgaataagtgatttc 17268183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 1078 - 1113
Target Start/End: Complemental strand, 10287053 - 10287018
Alignment:
Q  1078 gttttctttcgtttatttttgtgatttcgtcgtctt 1113  Q
    |||||||||||||| |||||||||||||||||||||    
T  10287053 gttttctttcgtttgtttttgtgatttcgtcgtctt 10287018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 1078 - 1113
Target Start/End: Original strand, 41797668 - 41797703
Alignment:
Q  1078 gttttctttcgtttatttttgtgatttcgtcgtctt 1113  Q
    |||||||||||||| |||||||||||||||||||||    
T  41797668 gttttctttcgtttgtttttgtgatttcgtcgtctt 41797703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 1070 - 1108
Target Start/End: Original strand, 17792540 - 17792578
Alignment:
Q  1070 tattttaagttttctttcgtttatttttgtgatttcgtc 1108  Q
    |||||| ||||||||||||||| ||||||||||||||||    
T  17792540 tattttcagttttctttcgtttgtttttgtgatttcgtc 17792578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 987 - 1112
Target Start/End: Complemental strand, 18089531 - 18089409
Alignment:
Q  987 gggtgatttagggtcaattttgaacc-aaagtcac-cctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 1084  Q
    ||||||||||||||||||||||| || ||| |||| ||||||| || ||||| ||| ||||| |||| ||||| |||||| ||  ||||||  |||||||    
T  18089531 gggtgatttagggtcaattttgatccaaaaatcactcctccgaattgttttttcttatatcctaattgaataagtgattt-cacatattttctgttttct 18089433  T
Q  1085 ttcgtttatttttgtgatttcgtcgtct 1112  Q
    || |    ||||||||||||||||||||    
T  18089432 ttag----tttttgtgatttcgtcgtct 18089409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 1079 - 1112
Target Start/End: Complemental strand, 12891165 - 12891132
Alignment:
Q  1079 ttttctttcgtttatttttgtgatttcgtcgtct 1112  Q
    ||||||||||||| ||||||||||||||||||||    
T  12891165 ttttctttcgtttgtttttgtgatttcgtcgtct 12891132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 1035 - 1104
Target Start/End: Complemental strand, 13879095 - 13879027
Alignment:
Q  1035 ttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgattt 1104  Q
    |||||||||||| |||| ||||| ||||||| |  ||||||  |||| ||||||||||||||||||||||    
T  13879095 ttccttctatcctaattgaataagtgatttc-acatattttctgtttcctttcgtttatttttgtgattt 13879027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 1035 - 1104
Target Start/End: Complemental strand, 14019220 - 14019152
Alignment:
Q  1035 ttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgattt 1104  Q
    |||||||||||| |||| ||||| ||||||| |  ||||||  |||| ||||||||||||||||||||||    
T  14019220 ttccttctatcctaattgaataagtgatttc-acatattttctgtttcctttcgtttatttttgtgattt 14019152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0312 (Bit Score: 60; Significance: 5e-25; HSPs: 1)
Name: scaffold0312
Description:

Target: scaffold0312; HSP #1
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 987 - 1112
Target Start/End: Original strand, 6119 - 6245
Alignment:
Q  987 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 1084  Q
    ||||||||||||||||||||||| |||||  |||||| |||||||| ||||||||||||||| |||| ||||| ||||||| |  ||||||  |||||||    
T  6119 gggtgatttagggtcaattttgacccaaaaatcacccctccgagttgtttttccttctatcctaattgaataagtgatttc-acatattttctgttttct 6217  T
Q  1085 ttcgtttatttttgtgatttcgtcgtct 1112  Q
    ||||||| ||||||||||||||||||||    
T  6218 ttcgtttgtttttgtgatttcgtcgtct 6245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 60; Significance: 5e-25; HSPs: 35)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 964 - 1112
Target Start/End: Complemental strand, 106206 - 106056
Alignment:
Q  964 tcttcttattgtctattgaagaagggtgatttagggtcaattttgaaccaaagtcaccctc--cgagttatttttccttctatccaaattaaataattga 1061  Q
    ||||||| |||||||  ||||| |||||||||||||||||||| || ||||| |||||| |  || ||| |||||| ||||| || |||||||||| |||    
T  106206 tcttctttttgtctaccgaagaggggtgatttagggtcaatttcgatccaaaatcacccccatcgggttgtttttcattctaccctaattaaataagtga 106107  T
Q  1062 tttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtct 1112  Q
    ||| ||  |||||| ||||||||||||||| |||||||||||| |||||||    
T  106106 ttttcacatatttttagttttctttcgtttgtttttgtgattttgtcgtct 106056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 987 - 1112
Target Start/End: Complemental strand, 36691946 - 36691820
Alignment:
Q  987 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 1084  Q
    ||||||||||||||||||||||| |||||  |||||| |||||||||||||||||||||||| |||| ||||| |||||| ||  ||||||  |||| ||    
T  36691946 gggtgatttagggtcaattttgacccaaaaatcacccctccgagttatttttccttctatcctaattgaataagtgattt-cacatattttctgtttcct 36691848  T
Q  1085 ttcgtttatttttgtgatttcgtcgtct 1112  Q
    ||||||| ||||||||||||||||||||    
T  36691847 ttcgtttgtttttgtgatttcgtcgtct 36691820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 261 - 407
Target Start/End: Complemental strand, 9170673 - 9170527
Alignment:
Q  261 aggaaaaattgatgaaaagttgtggtcaagtaagagctgtggtaaacaatttccaggatcagataaatctattcttgggtttgtataatcaatgtcagtg 360  Q
    ||||||| ||||||||||||||| |||||||||||| || |||| ||| |||||||||||||||| ||  | | || ||  | |||||||||||||||||    
T  9170673 aggaaaacttgatgaaaagttgttgtcaagtaagagttgcggtagacagtttccaggatcagatagataaaatgtttggagtctataatcaatgtcagtg 9170574  T
Q  361 aggatgagtttcacagggactggttgagtaggaagttcaagaatctt 407  Q
    |  || ||||| ||||| || || |||||||||||||||||||||||    
T  9170573 acaattagttttacaggtaccggatgagtaggaagttcaagaatctt 9170527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 987 - 1112
Target Start/End: Original strand, 31270308 - 31270434
Alignment:
Q  987 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 1084  Q
    ||||||||||||||||||||||| |||||  |||||| | ||| |||||||||||||||||| |||| ||||| ||||||| |  ||||||| |||||||    
T  31270308 gggtgatttagggtcaattttgacccaaaaatcaccccttcgaattatttttccttctatcctaattgaataagtgatttc-acatattttatgttttct 31270406  T
Q  1085 ttcgtttatttttgtgatttcgtcgtct 1112  Q
    ||||||| ||||||| ||||||||||||    
T  31270407 ttcgtttgtttttgtaatttcgtcgtct 31270434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 987 - 1112
Target Start/End: Original strand, 11819065 - 11819191
Alignment:
Q  987 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 1084  Q
    ||||||||||||||||||||||| |||||  |||||| ||||| || |||||||||||| |  |||| ||||| ||||||| |  ||||||| |||||||    
T  11819065 gggtgatttagggtcaattttgacccaaaaatcacccctccgatttgtttttccttctaccttaattgaataagtgatttc-acatattttatgttttct 11819163  T
Q  1085 ttcgtttatttttgtgatttcgtcgtct 1112  Q
    ||| ||| ||||||||||||||||||||    
T  11819164 ttcatttgtttttgtgatttcgtcgtct 11819191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 987 - 1111
Target Start/End: Complemental strand, 13702119 - 13701994
Alignment:
Q  987 gggtgatttagggtcaattttgaaccaaa-gtcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 1084  Q
    ||||||||||||||||||||||| ||||| ||||||| | ||| ||||||||| |||||||  |||| ||||| ||||||| |  ||||||  |||||||    
T  13702119 gggtgatttagggtcaattttgacccaaaagtcaccccttcgaattatttttctttctatcataattgaataagtgatttc-acatattttctgttttct 13702021  T
Q  1085 ttcgtttatttttgtgatttcgtcgtc 1111  Q
    ||| ||| |||||||||||||||||||    
T  13702020 ttcatttgtttttgtgatttcgtcgtc 13701994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 987 - 1110
Target Start/End: Complemental strand, 53155577 - 53155453
Alignment:
Q  987 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 1084  Q
    ||||||||||||||||||||||| |||||  |||||| | ||| || ||||||||| ||||| |||| ||||| ||||||| |  ||||||| |||||||    
T  53155577 gggtgatttagggtcaattttgacccaaaaatcacccattcgaattgtttttccttatatcctaattcaataagtgatttc-acatattttatgttttct 53155479  T
Q  1085 ttcgtttatttttgtgatttcgtcgt 1110  Q
    ||||||| ||||||| ||||||||||    
T  53155478 ttcgtttgtttttgtaatttcgtcgt 53155453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 1033 - 1112
Target Start/End: Original strand, 2147756 - 2147835
Alignment:
Q  1033 ttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtct 1112  Q
    ||||| |||||||| |||| ||||| |||||||||  |||||| ||||||||||| ||| ||||||||||||||||||||    
T  2147756 ttttcgttctatcctaattgaataagtgatttccacatattttcagttttctttcatttgtttttgtgatttcgtcgtct 2147835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 987 - 1112
Target Start/End: Original strand, 3456925 - 3457051
Alignment:
Q  987 gggtgatttagggtcaattttgaaccaaag-tcacc-ctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 1084  Q
    |||||||||| |||||||||||| |||||  ||||| |||||| || ||||||||||||||| |||| ||||| ||||||  |  ||||||  |||||||    
T  3456925 gggtgatttatggtcaattttgatccaaaaatcacctctccgaattgtttttccttctatcctaattgaataagtgattta-acatattttttgttttct 3457023  T
Q  1085 ttcgtttatttttgtgatttcgtcgtct 1112  Q
    ||| ||| ||||||||||||||||||||    
T  3457024 ttcctttgtttttgtgatttcgtcgtct 3457051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 987 - 1112
Target Start/End: Complemental strand, 48652587 - 48652461
Alignment:
Q  987 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 1084  Q
    ||||||||||||||||| ||||| |||||  |||||| ||||| || |||||||||||| |  |||| ||||| ||||||| |  ||||||  |||||||    
T  48652587 gggtgatttagggtcaactttgacccaaaaatcacccctccgatttgtttttccttctaccttaattgaataagtgatttc-acatattttctgttttct 48652489  T
Q  1085 ttcgtttatttttgtgatttcgtcgtct 1112  Q
    ||||||| ||||||||||||||||||||    
T  48652488 ttcgtttgtttttgtgatttcgtcgtct 48652461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 924 - 1112
Target Start/End: Complemental strand, 32080965 - 32080775
Alignment:
Q  924 tctcgcttctcttcttctcaaaccttaaccgtcggcc-atttcttcttattgtctattga-agaagggtgatttagggtcaattttgaaccaaag-tcac 1020  Q
    |||| ||||||| ||||||||||| || |||||| || |||||||||| || | | |||  ||| ||||||||||||||||||||||| |||||  ||||    
T  32080965 tctctcttctctccttctcaaaccctagccgtcgccccatttcttcttcttct-tgttgtcagatgggtgatttagggtcaattttgacccaaaaatcac 32080867  T
Q  1021 cc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtct 1112  Q
    || ||||| || |||||||||||| |  |||| ||||  ||||||| |  ||||||  |||||||||||||| |||||||||||| |||||||    
T  32080866 ccctccgatttgtttttccttctaccttaattgaataggtgatttc-acatattttctgttttctttcgtttgtttttgtgattttgtcgtct 32080775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 1032 - 1112
Target Start/End: Original strand, 35174733 - 35174812
Alignment:
Q  1032 tttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtct 1112  Q
    ||||||||||||||| |||| ||||| ||||||| |  ||||||  |||||||||||||| ||||||||||||||||||||    
T  35174733 tttttccttctatcctaattgaataagtgatttc-acatattttttgttttctttcgtttgtttttgtgatttcgtcgtct 35174812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 1023 - 1111
Target Start/End: Complemental strand, 54239127 - 54239040
Alignment:
Q  1023 tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtc 1111  Q
    ||||| || ||||||||||||||| |||| ||||| ||||||| |  ||||||  |||||||||||||| |||||||||||||||||||    
T  54239127 tccgaattgtttttccttctatcctaattgaataagtgatttc-acatattttctgttttctttcgtttgtttttgtgatttcgtcgtc 54239040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 987 - 1112
Target Start/End: Complemental strand, 31462893 - 31462767
Alignment:
Q  987 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 1084  Q
    ||||||||||||||||||||||| |||||  |||||| | ||| || ||||||||| ||||| |||| ||||| ||||||  |  ||||||  |||||||    
T  31462893 gggtgatttagggtcaattttgacccaaaaatcaccccttcgaattgtttttccttatatcctaattgaataagtgatttt-acatattttctgttttct 31462795  T
Q  1085 ttcgtttatttttgtgatttcgtcgtct 1112  Q
    || |||| ||||||||||||||||||||    
T  31462794 tttgtttgtttttgtgatttcgtcgtct 31462767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 987 - 1112
Target Start/End: Complemental strand, 34961005 - 34960879
Alignment:
Q  987 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 1084  Q
    |||||| |||||||||||||||| |||||  |||||| || || || ||||| ||||||| | |||| ||||| ||||||| |  ||||||| |||||||    
T  34961005 gggtgacttagggtcaattttgacccaaaaatcacccctcagaattgttttttcttctattctaattgaataagtgatttc-acatattttatgttttct 34960907  T
Q  1085 ttcgtttatttttgtgatttcgtcgtct 1112  Q
    ||||||| ||||||||||||| ||||||    
T  34960906 ttcgtttgtttttgtgatttcatcgtct 34960879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 987 - 1112
Target Start/End: Complemental strand, 36624841 - 36624715
Alignment:
Q  987 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 1084  Q
    |||||||| |||||||||  ||| |||||  |||||| ||||| || ||||||||||||||| || ||||||| ||||||| |  ||||||  |||||||    
T  36624841 gggtgattcagggtcaatcatgacccaaaaatcacccatccgaattgtttttccttctatcctaactaaataagtgatttc-acatattttctgttttct 36624743  T
Q  1085 ttcgtttatttttgtgatttcgtcgtct 1112  Q
    || |||| ||||||||||||||||||||    
T  36624742 tttgtttgtttttgtgatttcgtcgtct 36624715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 987 - 1112
Target Start/End: Original strand, 48400881 - 48401007
Alignment:
Q  987 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 1084  Q
    ||||||||||||||||||||||| |||||  |||| | || || || |||||||||||| || | || ||||| ||||||| |  ||||||  |||||||    
T  48400881 gggtgatttagggtcaattttgacccaaaaatcacacatcggaattgtttttccttctaccctattttaataagtgatttc-acatattttttgttttct 48400979  T
Q  1085 ttcgtttatttttgtgatttcgtcgtct 1112  Q
    ||||||| ||||||||||||||||||||    
T  48400980 ttcgtttgtttttgtgatttcgtcgtct 48401007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 1073 - 1113
Target Start/End: Original strand, 24520706 - 24520746
Alignment:
Q  1073 tttaagttttctttcgtttatttttgtgatttcgtcgtctt 1113  Q
    ||||||| |||||||||||||||||||||||||||||||||    
T  24520706 tttaagtattctttcgtttatttttgtgatttcgtcgtctt 24520746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 1032 - 1112
Target Start/End: Complemental strand, 41868394 - 41868315
Alignment:
Q  1032 tttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtct 1112  Q
    ||||||||||||||| |||| ||||| ||||||| |  ||||||  ||||||||||||||  |||||||||||||||||||    
T  41868394 tttttccttctatcctaattgaataagtgatttc-acatattttctgttttctttcgtttgcttttgtgatttcgtcgtct 41868315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 1050 - 1110
Target Start/End: Complemental strand, 47733960 - 47733900
Alignment:
Q  1050 ttaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgt 1110  Q
    |||||| | ||||||||||||| ||| ||||||||||||||| ||||||||||||| ||||    
T  47733960 ttaaatgagtgatttccatgtaattttagttttctttcgtttgtttttgtgatttcatcgt 47733900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 1032 - 1112
Target Start/End: Complemental strand, 49628187 - 49628108
Alignment:
Q  1032 tttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtct 1112  Q
    ||||||||||||||| | || ||||| ||||||| |  ||||||  |||||||||||||| ||||||||||||||||||||    
T  49628187 tttttccttctatcctagttgaataagtgatttc-acatattttttgttttctttcgtttgtttttgtgatttcgtcgtct 49628108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 987 - 1112
Target Start/End: Original strand, 14585444 - 14585570
Alignment:
Q  987 gggtgatttagggtcaattttgaaccaaag-tcac-cctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 1084  Q
    ||||||||||| ||||||||||| |||||  |||| ||||  | || ||||||||||||||| |||| ||||| ||||||| |  ||||||  |||||||    
T  14585444 gggtgatttagagtcaattttgacccaaaaatcactcctctaaattgtttttccttctatcctaattgaataagtgatttc-acatattttctgttttct 14585542  T
Q  1085 ttcgtttatttttgtgatttcgtcgtct 1112  Q
    || |||| ||||||||||||| ||||||    
T  14585543 tttgtttgtttttgtgatttcctcgtct 14585570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 1032 - 1113
Target Start/End: Original strand, 22484994 - 22485074
Alignment:
Q  1032 tttttccttctatccaaattaaataattgatttc-catgtattttaagttttctttcgtttatttttgtgatttcgtcgtctt 1113  Q
    ||||||||||||||| |||| ||||| ||||||| |||  |||||  |||||||||||||| |||||||||||||||| ||||    
T  22484994 tttttccttctatcctaattgaataagtgatttcgcat--attttctgttttctttcgtttgtttttgtgatttcgtcatctt 22485074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 987 - 1112
Target Start/End: Original strand, 38527245 - 38527371
Alignment:
Q  987 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 1084  Q
    |||||||||||| ||||| ||||||||||  |||| | ||| | || ||||||||||||||  |||| ||||| ||||||| |  ||||||  |||||||    
T  38527245 gggtgatttaggatcaatcttgaaccaaaaatcacacatccaaattgtttttccttctatcttaattgaataaatgatttc-acatattttctgttttct 38527343  T
Q  1085 ttcgtttatttttgtgatttcgtcgtct 1112  Q
    ||||||| ||||| ||||||||||||||    
T  38527344 ttcgtttgtttttatgatttcgtcgtct 38527371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 988 - 1112
Target Start/End: Complemental strand, 40013421 - 40013293
Alignment:
Q  988 ggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatcca---aattaaataattgatttccatgtattttaagtttt 1082  Q
    |||||||||| ||||||||||| |||||  |||||| | ||| || |||||||||||||||    |||| ||||| ||||||| |  ||||||  |||||    
T  40013421 ggtgatttagtgtcaattttgacccaaaaatcacccattcgaattgtttttccttctatcctcctaattgaataagtgatttc-acatattttctgtttt 40013323  T
Q  1083 ctttcgtttatttttgtgatttcgtcgtct 1112  Q
    ||||||||| ||||||||||||||||||||    
T  40013322 ctttcgtttgtttttgtgatttcgtcgtct 40013293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 1050 - 1112
Target Start/End: Original strand, 4219226 - 4219288
Alignment:
Q  1050 ttaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtct 1112  Q
    |||||||| |||||| ||  |||||| ||||||||||||||| ||||| ||||||||||||||    
T  4219226 ttaaataagtgattttcacatattttcagttttctttcgtttgtttttatgatttcgtcgtct 4219288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 1078 - 1112
Target Start/End: Original strand, 33637477 - 33637511
Alignment:
Q  1078 gttttctttcgtttatttttgtgatttcgtcgtct 1112  Q
    |||||||||||||||||||||||||||||||||||    
T  33637477 gttttctttcgtttatttttgtgatttcgtcgtct 33637511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 1032 - 1110
Target Start/End: Complemental strand, 40883968 - 40883891
Alignment:
Q  1032 tttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgt 1110  Q
    ||||||||| ||||| |||| ||||| |||||||  | ||||||  |||||||||||||| ||||||||||||||||||    
T  40883968 tttttccttttatcctaattgaataagtgatttcact-tattttctgttttctttcgtttgtttttgtgatttcgtcgt 40883891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 1048 - 1113
Target Start/End: Complemental strand, 40401586 - 40401521
Alignment:
Q  1048 aattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtctt 1113  Q
    |||||||||| ||||||||| ||||||| |||  | |||||||||||||| ||||||||| |||||    
T  40401586 aattaaataagtgatttccacgtattttcagtcatatttcgtttatttttatgatttcgtagtctt 40401521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 1020 - 1112
Target Start/End: Complemental strand, 55090695 - 55090604
Alignment:
Q  1020 ccctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtct 1112  Q
    |||||||| || |||||||||||| |  |||||||||| ||||||| |  ||||||  |||||||||| ||| ||||||||||| ||||||||    
T  55090695 ccctccgatttgtttttccttctaccttaattaaataagtgatttc-acatattttctgttttctttcatttgtttttgtgattccgtcgtct 55090604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 1035 - 1113
Target Start/End: Original strand, 39610244 - 39610321
Alignment:
Q  1035 ttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtctt 1113  Q
    |||||||||||| |||| ||||| ||||||| |  ||||||  |||| ||||||||| |||||||||||| ||||||||    
T  39610244 ttccttctatcctaattgaataagtgatttc-acatattttttgtttcctttcgtttgtttttgtgattttgtcgtctt 39610321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 982 - 1024
Target Start/End: Complemental strand, 43839643 - 43839601
Alignment:
Q  982 aagaagggtgatttagggtcaattttgaaccaaagtcaccctc 1024  Q
    |||| |||||||||||||||||||||  |||||||||||||||    
T  43839643 aagatgggtgatttagggtcaatttttgaccaaagtcaccctc 43839601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 987 - 1112
Target Start/End: Complemental strand, 4206658 - 4206532
Alignment:
Q  987 gggtgatttagggtcaattttgaac-caaagtca-ccctccgagttatttttccttctatccaaattaaataattgatttc-catgtattttaagttttc 1083  Q
    |||||||||| |||||||||||| |  ||| ||| |||||||| || ||||||| | ||||| |||| ||||| || |||| ||| | |||||  |||||    
T  4206658 gggtgatttatggtcaattttgatcaaaaaatcacccctccgaattgtttttccatatatcctaattgaataagtgttttcacatatttttta--ttttc 4206561  T
Q  1084 tttcgtttatttttgtgatttcgtcgtct 1112  Q
    ||| |||| ||||||||||||||||||||    
T  4206560 ttttgtttgtttttgtgatttcgtcgtct 4206532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 1071 - 1112
Target Start/End: Complemental strand, 5327538 - 5327497
Alignment:
Q  1071 attttaagttttctttcgtttatttttgtgatttcgtcgtct 1112  Q
    ||||| ||||||||||||||| ||||||||||||||| ||||    
T  5327538 attttcagttttctttcgtttgtttttgtgatttcgttgtct 5327497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 1078 - 1111
Target Start/End: Complemental strand, 34103772 - 34103739
Alignment:
Q  1078 gttttctttcgtttatttttgtgatttcgtcgtc 1111  Q
    |||||||||||||| |||||||||||||||||||    
T  34103772 gttttctttcgtttgtttttgtgatttcgtcgtc 34103739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 58; Significance: 8e-24; HSPs: 29)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 8e-24
Query Start/End: Original strand, 962 - 1112
Target Start/End: Original strand, 2968486 - 2968640
Alignment:
Q  962 tttcttcttattgtctattgaagaagggtgatttagggtcaattttgaaccaaagtcacc----ctccgagttatttttccttctatccaaattaaataa 1057  Q
    |||||| || |||||||||||||| | |||||||| ||||||||||||  |||| |||||    ||||||||| |||||| || ||| | ||||||||||    
T  2968486 tttctttttcttgtctattgaagatgagtgatttatggtcaattttgactcaaaatcacctctcctccgagttgtttttctttatattctaattaaataa 2968585  T
Q  1058 ttgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtct 1112  Q
     |||||| ||  |||||| ||||||||||||||| |||||||||||| |||||||    
T  2968586 gtgattttcacatatttttagttttctttcgtttgtttttgtgattttgtcgtct 2968640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 988 - 1113
Target Start/End: Complemental strand, 14600844 - 14600718
Alignment:
Q  988 ggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctt 1085  Q
    |||||||||||||||||||||| |||||  ||| || |||||||| ||||| ||||||||| |||| ||||| ||||||| |  ||||||  ||||||||    
T  14600844 ggtgatttagggtcaattttgacccaaaaatcatccatccgagttgttttttcttctatcctaattgaataactgatttc-acatattttctgttttctt 14600746  T
Q  1086 tcgtttatttttgtgatttcgtcgtctt 1113  Q
    |||||| |||||||||||||||||||||    
T  14600745 tcgtttgtttttgtgatttcgtcgtctt 14600718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 1022 - 1112
Target Start/End: Original strand, 31308167 - 31308256
Alignment:
Q  1022 ctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtct 1112  Q
    ||||||||| ||||||||||||||| |||| ||||| ||||||| |  ||||||| |||||||||||||| ||||||||||||||||||||    
T  31308167 ctccgagttgtttttccttctatcctaattgaataagtgatttc-acatattttatgttttctttcgtttgtttttgtgatttcgtcgtct 31308256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 1020 - 1110
Target Start/End: Complemental strand, 32779063 - 32778973
Alignment:
Q  1020 ccctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgt 1110  Q
    |||| |||||| ||||||||| ||||  ||||||||||  ||||||||  |||||| ||||||||||||||||||||||||||||||||||    
T  32779063 cccttcgagttgtttttccttatatcataattaaataagagatttccacatattttcagttttctttcgtttatttttgtgatttcgtcgt 32778973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 931 - 1051
Target Start/End: Complemental strand, 13576378 - 13576257
Alignment:
Q  931 tctcttcttctcaaaccttaaccgtcggccatttcttcttattgtctattgaagaagggtgatttagggtcaattttgaaccaaagtca-ccctccgagt 1029  Q
    ||||| |||||||||| |||  |||||||| ||||||||| |||||||  ||||| |||||||||||| |||||||||| | ||| ||| ||||||||||    
T  13576378 tctctccttctcaaactttagtcgtcggccctttcttcttcttgtctaacgaagaggggtgatttaggatcaattttgacctaaaatcatccctccgagt 13576279  T
Q  1030 tatttttccttctatccaaatt 1051  Q
    | |||||| |||||||| ||||    
T  13576278 tgtttttctttctatcctaatt 13576257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 987 - 1112
Target Start/End: Original strand, 37612635 - 37612761
Alignment:
Q  987 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttc-catgtattttaagttttc 1083  Q
    ||||||||||||||||||||||| |||||  |||||| ||||| || ||||||||||||||| | || ||||| ||||||| ||| | |||||  |||||    
T  37612635 gggtgatttagggtcaattttgacccaaaaatcacccctccgaattttttttccttctatcctagttgaataagtgatttcacatatttttta--ttttc 37612732  T
Q  1084 tttcgtttatttttgtgatttcgtcgtct 1112  Q
    |||||||| ||||||||||||||||||||    
T  37612733 tttcgtttgtttttgtgatttcgtcgtct 37612761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 987 - 1112
Target Start/End: Complemental strand, 30027027 - 30026901
Alignment:
Q  987 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 1084  Q
    |||||||||||||||| |||||| |||||  |||||| |||||||| ||||| ||||||||  |||| ||||| ||||||| |  ||||||  |||||||    
T  30027027 gggtgatttagggtcatttttgacccaaaaatcacccatccgagttgttttttcttctatcataattgaataagtgatttc-acatattttctgttttct 30026929  T
Q  1085 ttcgtttatttttgtgatttcgtcgtct 1112  Q
    ||||||| ||||||||||||||||||||    
T  30026928 ttcgtttgtttttgtgatttcgtcgtct 30026901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 986 - 1113
Target Start/End: Complemental strand, 10338970 - 10338842
Alignment:
Q  986 agggtgatttagggtcaattttga-accaaagtca-ccctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttc 1083  Q
    ||||||||||| ||||||||||||  | ||| ||| |||||||| || ||||||||| ||||| |||| ||||| |||||| ||  ||||||  ||||||    
T  10338970 agggtgatttaaggtcaattttgacgcaaaaatcacccctccgaattgtttttccttttatcctaattgaataagtgattt-cacatattttttgttttc 10338872  T
Q  1084 tttcgtttatttttgtgatttcgtcgtctt 1113  Q
    |||||||| |||||||||||||||||||||    
T  10338871 tttcgtttgtttttgtgatttcgtcgtctt 10338842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 932 - 1024
Target Start/End: Complemental strand, 25939848 - 25939757
Alignment:
Q  932 ctcttcttctcaaaccttaaccgtcggccatttcttcttattgtctattgaagaagggtgatttagggtcaattttgaaccaaagtcaccctc 1024  Q
    ||||||||||||||| ||| ||||| | ||||| ||||| |||||||| ||||| || |||||||||||||||||||| ||||| ||||||||    
T  25939848 ctcttcttctcaaactttagccgtcagtcatttattctttttgtctatcgaagatgg-tgatttagggtcaattttgacccaaaatcaccctc 25939757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 988 - 1112
Target Start/End: Original strand, 9501572 - 9501698
Alignment:
Q  988 ggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttattttt-ccttctatccaaattaaataattgatttccatgtattttaagttttct 1084  Q
    |||||||||||||||||||||| |||||  |||||| || || || ||||| |||||||||| |||| ||||| ||||||| |  ||||||  |||||||    
T  9501572 ggtgatttagggtcaattttgatccaaaaatcacccatctgaattgttttttccttctatcctaattgaataagtgatttc-acatattttctgttttct 9501670  T
Q  1085 ttcgtttatttttgtgatttcgtcgtct 1112  Q
    ||||||| ||||||||||||||||||||    
T  9501671 ttcgtttgtttttgtgatttcgtcgtct 9501698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 959 - 1113
Target Start/End: Original strand, 7281600 - 7281757
Alignment:
Q  959 ccatttcttcttattgtctattgaagaagggtgatttagggtcaattttgaaccaaagtcaccc-tccgagttatttttccttctatccaaattaaataa 1057  Q
    |||||||||||| |||||||||||||| |  |||||||||||||||| | | | ||| |||||| ||||| || |||||| |||| | | | || |||||    
T  7281600 ccatttcttcttcttgtctattgaagatgaatgatttagggtcaattctaacctaaaatcacccatccgaattgtttttctttcttttctagttgaataa 7281699  T
Q  1058 ttgatttccatgtatttta--agttttctttcgtttatttttgtgatttcgtcgtctt 1113  Q
     |||||||||| ||||||   | | ||||||||||| ||||||||||||| |||||||    
T  7281700 gtgatttccatatatttttttattgttctttcgtttgtttttgtgatttcatcgtctt 7281757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 985 - 1112
Target Start/End: Complemental strand, 2234619 - 2234491
Alignment:
Q  985 aagggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagtttt 1082  Q
    ||||||||| |||||| |||||||| |||||  |||||| | ||| || ||||||||||||||| | || ||||| ||||||| |  ||||||  |||||    
T  2234619 aagggtgatctagggttaattttgatccaaaaatcaccccttcgaattgtttttccttctatcctagttgaataagtgatttc-acatattttttgtttt 2234521  T
Q  1083 ctttcgtttatttttgtgatttcgtcgtct 1112  Q
    ||||||||| ||||||||||||||||||||    
T  2234520 ctttcgtttgtttttgtgatttcgtcgtct 2234491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 929 - 1112
Target Start/End: Complemental strand, 30039536 - 30039358
Alignment:
Q  929 cttctcttcttctcaaaccttaaccgtcggccatttcttcttattgtctattgaagaagggtgatttagggtcaattttgaaccaaagtcac-cctccga 1027  Q
    ||||||| ||| |||||||  |||||||   | |||||| || ||||||| |||||| | |||||||| |||||||||||| ||||| |||| | |||||    
T  30039536 cttctctccttttcaaaccccaaccgtcattcctttctttttcttgtctaatgaagatgagtgatttatggtcaattttgacccaaaatcactcatccga 30039437  T
Q  1028 gttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtct 1112  Q
     || ||||||||||| | | |||| ||||  |||||||||  |||      ||||||||||||| ||||||||||||||||||||    
T  30039436 attgtttttccttcttttctaattgaatatgtgatttccacatat------ttttctttcgtttgtttttgtgatttcgtcgtct 30039358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 1032 - 1113
Target Start/End: Complemental strand, 39067789 - 39067709
Alignment:
Q  1032 tttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtctt 1113  Q
    ||||||||||||||| |||| ||||| ||||||| |  ||||||  |||||||||||||| |||||||||||||||||||||    
T  39067789 tttttccttctatcctaatttaataagtgatttc-acatattttctgttttctttcgtttgtttttgtgatttcgtcgtctt 39067709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 987 - 1112
Target Start/End: Complemental strand, 24791315 - 24791189
Alignment:
Q  987 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 1084  Q
    |||||||||| |||||||||||| |||||  ||| || ||||| || ||||||||| ||||| |||| ||||| ||||||  |  ||||||  |||||||    
T  24791315 gggtgatttatggtcaattttgacccaaaaatcatccatccgaattgtttttccttatatcctaattcaataagtgattta-acatattttctgttttct 24791217  T
Q  1085 ttcgtttatttttgtgatttcgtcgtct 1112  Q
    ||||||| ||||||||||||||||||||    
T  24791216 ttcgtttgtttttgtgatttcgtcgtct 24791189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 987 - 1112
Target Start/End: Complemental strand, 31407895 - 31407769
Alignment:
Q  987 gggtgatttagggtcaattttgaaccaaag-tcacc-ctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 1084  Q
    ||||||||||||||||||||||| |||||  ||| | |||||| || ||||||||||||||  | || ||||| ||||||| |  ||||||  |||||||    
T  31407895 gggtgatttagggtcaattttgacccaaaaatcatctctccgaattgtttttccttctatcatagttgaataaatgatttc-acatattttttgttttct 31407797  T
Q  1085 ttcgtttatttttgtgatttcgtcgtct 1112  Q
    ||||||| ||||| ||||||||||||||    
T  31407796 ttcgtttgtttttatgatttcgtcgtct 31407769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 987 - 1112
Target Start/End: Original strand, 41361714 - 41361840
Alignment:
Q  987 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 1084  Q
    |||||||||| |||||||||||| |||||  |||||| ||||| || |||||||||||| |  |||| ||||| ||||||| |  ||||||  |||||||    
T  41361714 gggtgatttatggtcaattttgacccaaaaatcacccctccgatttgtttttccttctaccgtaattgaataagtgatttc-acatattttctgttttct 41361812  T
Q  1085 ttcgtttatttttgtgatttcgtcgtct 1112  Q
    ||||||| |||||||||||| |||||||    
T  41361813 ttcgtttgtttttgtgatttggtcgtct 41361840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 987 - 1112
Target Start/End: Complemental strand, 2025356 - 2025230
Alignment:
Q  987 gggtgatttagggtcaattttgaaccaaag-tcaccct-ccgagttatttttccttctatccaaattaaataattgatttc-catgtattttaagttttc 1083  Q
    |||||||||| |||||||||||| | |||  ||||||| || |||| ||||||||| ||| | |||| ||||| ||||||| ||||| || |  |||||     
T  2025356 gggtgatttatggtcaattttgaccaaaaaatcacccttccaagttgtttttccttttattctaattgaataagtgatttcacatgttttct--gtttta 2025259  T
Q  1084 tttcgtttatttttgtgatttcgtcgtct 1112  Q
    |||||||||||||||||||||||||||||    
T  2025258 tttcgtttatttttgtgatttcgtcgtct 2025230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 990 - 1112
Target Start/End: Complemental strand, 3204899 - 3204777
Alignment:
Q  990 tgatttagggtcaattttgaaccaaag-tcaccctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcg 1088  Q
    |||||||| ||||||||||| |||||  | ||||||||| || ||||||| ||||| | |||| ||| | ||||||| |  ||||||  |||||||||||    
T  3204899 tgatttagagtcaattttgacccaaaaattaccctccgaattgtttttccatctattctaatttaatgagtgatttc-acatattttctgttttctttcg 3204801  T
Q  1089 tttatttttgtgatttcgtcgtct 1112  Q
    ||| ||| ||||||||||||||||    
T  3204800 tttgtttatgtgatttcgtcgtct 3204777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 987 - 1112
Target Start/End: Original strand, 11161864 - 11161990
Alignment:
Q  987 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 1084  Q
    |||| |||||||||||||||||| |||||  |||||| | | |||| |||||| || ||||| |||| ||||| | ||||| |  | |||| ||||||||    
T  11161864 gggtaatttagggtcaattttgacccaaaaatcaccccttcaagttgtttttctttatatcctaattgaataagtcatttc-acatcttttcagttttct 11161962  T
Q  1085 ttcgtttatttttgtgatttcgtcgtct 1112  Q
    ||||||| ||||||||||||||||||||    
T  11161963 ttcgtttgtttttgtgatttcgtcgtct 11161990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 1023 - 1112
Target Start/End: Complemental strand, 37128595 - 37128507
Alignment:
Q  1023 tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtct 1112  Q
    ||||| || ||||||||||||||| | || ||||| ||||||| |  ||||||  |||||||||||||| ||||||| ||||||||||||    
T  37128595 tccgaattgtttttccttctatcctagttgaataagtgatttc-acatattttttgttttctttcgtttgtttttgtaatttcgtcgtct 37128507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 987 - 1112
Target Start/End: Original strand, 10147928 - 10148055
Alignment:
Q  987 gggtgatttagggtcaattttgaaccaa-agtca-ccctccgagtt-atttttccttctatccaaattaaataattgatttccatgtattttaagttttc 1083  Q
    ||||||||||||||||||||||| |||| | ||| |||||||||||  ||||| ||||||||| |||| ||||| |||||| ||  ||||||  |||| |    
T  10147928 gggtgatttagggtcaattttgacccaataatcacccctccgagttgtttttttcttctatcctaattgaataagtgattt-cacatattttctgtttcc 10148026  T
Q  1084 tttcgtttatttttgtgatttcgtcgtct 1112  Q
    |||||||| |||||| ||||  |||||||    
T  10148027 tttcgtttgtttttgagattatgtcgtct 10148055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 987 - 1112
Target Start/End: Original strand, 12329608 - 12329735
Alignment:
Q  987 gggtgatttagggtcaattttgaaccaaag-tcaccctc-cgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 1084  Q
    ||||||||||| ||||||||||| |||||  ||||| |  ||| || ||||||||| ||||| |||| ||||| ||||||| |  ||||||  |||||||    
T  12329608 gggtgatttagagtcaattttgatccaaaaatcaccatttcgaattgtttttccttttatcctaattgaataagtgatttc-acatattttctgttttct 12329706  T
Q  1085 ttcgttta-tttttgtgatttcgtcgtct 1112  Q
    |||||||  ||||||||||||||||||||    
T  12329707 ttcgttttgtttttgtgatttcgtcgtct 12329735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 1032 - 1108
Target Start/End: Complemental strand, 15288898 - 15288823
Alignment:
Q  1032 tttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtc 1108  Q
    |||||| |||||||| |||||||||  |||||||  | ||||||  |||||||||||||| ||||||||||||||||    
T  15288898 tttttctttctatcctaattaaatacgtgatttcact-tattttctgttttctttcgtttgtttttgtgatttcgtc 15288823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 1032 - 1108
Target Start/End: Complemental strand, 15469267 - 15469192
Alignment:
Q  1032 tttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtc 1108  Q
    |||||| |||||||| |||||||||  |||||||  | ||||||  |||||||||||||| ||||||||||||||||    
T  15469267 tttttctttctatcctaattaaatacgtgatttcact-tattttctgttttctttcgtttgtttttgtgatttcgtc 15469192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 1026 - 1112
Target Start/End: Original strand, 4757188 - 4757273
Alignment:
Q  1026 gagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtct 1112  Q
    ||||| ||||||||||||||  |||||||||| |||||| ||  ||||||  |||||||||| ||| |||||  |||||||||||||    
T  4757188 gagttgtttttccttctatcataattaaataaatgattt-cacatattttctgttttctttcatttctttttaagatttcgtcgtct 4757273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 1078 - 1112
Target Start/End: Complemental strand, 7579910 - 7579876
Alignment:
Q  1078 gttttctttcgtttatttttgtgatttcgtcgtct 1112  Q
    |||||||||||||| ||||||||||||||||||||    
T  7579910 gttttctttcgtttgtttttgtgatttcgtcgtct 7579876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 1070 - 1112
Target Start/End: Complemental strand, 13576250 - 13576208
Alignment:
Q  1070 tattttaagttttctttcgtttatttttgtgatttcgtcgtct 1112  Q
    |||||| |||||||||||||||||||| ||||||| |||||||    
T  13576250 tattttcagttttctttcgtttattttggtgattttgtcgtct 13576208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 1023 - 1112
Target Start/End: Complemental strand, 23971203 - 23971117
Alignment:
Q  1023 tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtct 1112  Q
    |||||||| ||||||||||||| | |||| ||||| |||||| ||  ||||||| |||||||||||||  | |||||||||| |||||||    
T  23971203 tccgagttgtttttccttctattctaattgaataagtgattt-cacatattttatgttttctttcgtt--tgtttgtgattttgtcgtct 23971117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0155 (Bit Score: 53; Significance: 8e-21; HSPs: 1)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 53; E-Value: 8e-21
Query Start/End: Original strand, 988 - 1105
Target Start/End: Original strand, 35065 - 35185
Alignment:
Q  988 ggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttc-catgtattttaagttttct 1084  Q
    |||||||||||||||||||||| |||||  |||||| |||||||| ||||||||||||||| |||| ||||| ||||||| ||| ||||||  |||||||    
T  35065 ggtgatttagggtcaattttgacccaaaaatcacccatccgagttgtttttccttctatcctaattgaataagtgatttcacatatattttctgttttct 35164  T
Q  1085 ttcgtttatttttgtgatttc 1105  Q
    ||||||| |||||| ||||||    
T  35165 ttcgtttgtttttgcgatttc 35185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 3e-20; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 987 - 1112
Target Start/End: Complemental strand, 6419997 - 6419871
Alignment:
Q  987 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 1084  Q
    ||||||||||||||||||||||| |||||  |||||| || ||||| ||||||||||||||| |||| ||||| ||||||| |  ||||||  |||||||    
T  6419997 gggtgatttagggtcaattttgatccaaaaatcacccctctgagttgtttttccttctatcctaattgaataagtgatttc-acatattttttgttttct 6419899  T
Q  1085 ttcgtttatttttgtgatttcgtcgtct 1112  Q
    ||| ||| ||||||||||||||||||||    
T  6419898 ttcatttgtttttgtgatttcgtcgtct 6419871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 990 - 1112
Target Start/End: Complemental strand, 14783307 - 14783184
Alignment:
Q  990 tgatttagggtcaattttgaaccaaag-tcac-cctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctttc 1087  Q
    |||||||||||||||||||| |||||  |||| ||||||| || ||||||||||||||| | || ||||| ||||||| |  ||||||  ||||||||||    
T  14783307 tgatttagggtcaattttgacccaaaaatcacgcctccgaattgtttttccttctatcctagttgaataagtgatttc-acatattttttgttttctttc 14783209  T
Q  1088 gtttatttttgtgatttcgtcgtct 1112  Q
     ||| ||||||||||||||||||||    
T  14783208 atttctttttgtgatttcgtcgtct 14783184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 987 - 1112
Target Start/End: Complemental strand, 12481509 - 12481383
Alignment:
Q  987 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 1084  Q
    |||||||||||| |||||||||| |||||  |||||| ||||| || |||||||||||| |  |||| ||||| ||||||| |  ||||||  |||||||    
T  12481509 gggtgatttaggatcaattttgacccaaaaatcacccctccgatttgtttttccttctaccttaattgaataagtgatttc-acatattttctgttttct 12481411  T
Q  1085 ttcgtttatttttgtgatttcgtcgtct 1112  Q
    ||||||| ||||||||||||||||||||    
T  12481410 ttcgtttgtttttgtgatttcgtcgtct 12481383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 987 - 1112
Target Start/End: Complemental strand, 15590218 - 15590092
Alignment:
Q  987 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 1084  Q
    ||||||||||||||||||||||| |||||  |||||| || || || ||||| ||||||||| |||| ||||| ||||||| |  ||||||  |||||||    
T  15590218 gggtgatttagggtcaattttgacccaaaaatcacccctctgaattgttttttcttctatcctaattgaataagtgatttc-acatattttctgttttct 15590120  T
Q  1085 ttcgtttatttttgtgatttcgtcgtct 1112  Q
    |||||||  |||||||||||||||||||    
T  15590119 ttcgtttgcttttgtgatttcgtcgtct 15590092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 987 - 1112
Target Start/End: Complemental strand, 21507947 - 21507821
Alignment:
Q  987 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 1084  Q
    ||||||||||||||||||||||| |||||  |||||| ||| | || ||||||||||||||| | || ||||| ||||||| |  ||||||  |||||||    
T  21507947 gggtgatttagggtcaattttgacccaaacatcacccctccaaattgtttttccttctatcctagttgaataagtgatttc-acatattttttgttttct 21507849  T
Q  1085 ttcgtttatttttgtgatttcgtcgtct 1112  Q
    ||||||| |||||||||||| |||||||    
T  21507848 ttcgtttgtttttgtgattttgtcgtct 21507821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 988 - 1112
Target Start/End: Original strand, 23654233 - 23654358
Alignment:
Q  988 ggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctt 1085  Q
    |||||||||||||||||||||| |||||  |||||| ||||| || |||||||||||| |  || | ||||| ||||||| |  ||||||  ||||| ||    
T  23654233 ggtgatttagggtcaattttgacccaaaaatcacccatccgatttgtttttccttctaccttaactgaataagtgatttc-acatattttttgttttatt 23654331  T
Q  1086 tcgtttatttttgtgatttcgtcgtct 1112  Q
    |||||| ||||||||||||||||||||    
T  23654332 tcgtttgtttttgtgatttcgtcgtct 23654358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 987 - 1112
Target Start/End: Complemental strand, 4922021 - 4921894
Alignment:
Q  987 gggtgatttagggtcaattttgaaccaaagtcaccc-tccgagt--tatttttccttctatccaaattaaataattgatttccatgtattttaagttttc 1083  Q
    ||||||||||||||||||||||| |||||   |||| ||| |||  | ||||||||||||||  |||| ||||| ||||||| |  |||||| ||||||     
T  4922021 gggtgatttagggtcaattttgacccaaaaatacccctcccagtagtttttttccttctatcttaattgaataagtgatttc-acatattttcagtttta 4921923  T
Q  1084 tttcgtttatttttgtgatttcgtcgtct 1112  Q
    |||||||| |||||||||||| |||||||    
T  4921922 tttcgtttgtttttgtgattttgtcgtct 4921894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 987 - 1112
Target Start/End: Complemental strand, 2304949 - 2304823
Alignment:
Q  987 gggtgatttagggtcaattttgaaccaaag-tca-ccctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 1084  Q
    |||||||||||| || ||||||| |||||  ||| ||||| ||||| |||| |||||| ||  |||| ||||| ||||||| |  ||||||  |||||||    
T  2304949 gggtgatttaggatcgattttgacccaaaaatcaaccctctgagttgttttcccttctgtcataattgaataagtgatttc-acatattttctgttttct 2304851  T
Q  1085 ttcgtttatttttgtgatttcgtcgtct 1112  Q
    ||||||| ||||||||||||||||||||    
T  2304850 ttcgtttgtttttgtgatttcgtcgtct 2304823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 987 - 1112
Target Start/End: Complemental strand, 8693799 - 8693670
Alignment:
Q  987 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatcca---aattaaataattgatttccatgtattttaagttt 1081  Q
    |||||||||| |||||||||||| |||||  |||||| ||||| || |||||||||||||||    |||| ||||| ||||||| |  ||||||  ||||    
T  8693799 gggtgatttaaggtcaattttgacccaaaaatcacccatccgaattgtttttccttctatcctcctaattgaataagtgatttc-acatattttctgttt 8693701  T
Q  1082 tctttcgtttatttttgtgatttcgtcgtct 1112  Q
    |||||||||| ||||||| |||| |||||||    
T  8693700 tctttcgtttgtttttgtcattttgtcgtct 8693670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 987 - 1112
Target Start/End: Complemental strand, 19402947 - 19402821
Alignment:
Q  987 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 1084  Q
    ||||||||| |||||| |||||| |||||  |||||| |  ||||| ||||||||| ||||  |||| || || ||||||| |  ||||||  |||||||    
T  19402947 gggtgatttcgggtcacttttgatccaaaaatcacccctttgagttgtttttccttgtatcataattgaacaagtgatttc-acatattttctgttttct 19402849  T
Q  1085 ttcgtttatttttgtgatttcgtcgtct 1112  Q
    ||||||| ||||||||||||||||||||    
T  19402848 ttcgtttgtttttgtgatttcgtcgtct 19402821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 1034 - 1096
Target Start/End: Original strand, 2488169 - 2488231
Alignment:
Q  1034 tttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttt 1096  Q
    ||||||||||||| |||  ||||| ||||||||| ||||||| | ||||||||||||| ||||    
T  2488169 tttccttctatcctaatcgaataagtgatttccacgtattttcatttttctttcgtttgtttt 2488231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 3e-20; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 987 - 1112
Target Start/End: Original strand, 17331310 - 17331436
Alignment:
Q  987 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 1084  Q
    ||||||||||||||||||||||| |||||  |||||| ||||| || ||||||||||||||  |||| ||||| ||||||| |  ||||||  |||||||    
T  17331310 gggtgatttagggtcaattttgacccaaaaatcacccctccgatttgtttttccttctatcttaattgaataagtgatttc-acatattttctgttttct 17331408  T
Q  1085 ttcgtttatttttgtgatttcgtcgtct 1112  Q
    ||||||| ||||||||||||||||||||    
T  17331409 ttcgtttgtttttgtgatttcgtcgtct 17331436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 989 - 1112
Target Start/End: Original strand, 17699537 - 17699661
Alignment:
Q  989 gtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttcttt 1086  Q
    ||||||||||||||||||||| |||||  |||||| ||||| || ||||||||||||||| |||| ||||| ||||||| |  | ||||  |||||||||    
T  17699537 gtgatttagggtcaattttgacccaaaaatcacccctccgaattgtttttccttctatcctaattgaataagtgatttc-acatcttttctgttttcttt 17699635  T
Q  1087 cgtttatttttgtgatttcgtcgtct 1112  Q
    ||||| ||||||||||||||||||||    
T  17699636 cgtttgtttttgtgatttcgtcgtct 17699661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 957 - 1110
Target Start/End: Original strand, 25961878 - 25962033
Alignment:
Q  957 ggccatttcttcttattgtctattgaagaagggtgatttagggtcaattttgaaccaaagtca-ccctccgagtt-atttttccttctatccaaattaaa 1054  Q
    |||| ||||||||| ||||||||  |||| ||||||||||||||||||||||| ||| | ||| || | ||||||  ||||||||| ||||| |||||||    
T  25961878 ggccctttcttcttcttgtctatcaaaga-gggtgatttagggtcaattttgatccagaatcatccattcgagttggtttttccttatatcctaattaaa 25961976  T
Q  1055 taattgatttccatgta-ttttaagttttctttcgtttatttttgtgatttcgtcgt 1110  Q
    ||| ||||||| |  || |||| ||||||||||| ||| ||||||||||||||||||    
T  25961977 taagtgatttctacatatttttcagttttctttcctttgtttttgtgatttcgtcgt 25962033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 987 - 1113
Target Start/End: Original strand, 29097771 - 29097898
Alignment:
Q  987 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 1084  Q
    ||||||||||||||||||||||| |||||| |||||| ||||| || |||||||||||| |  |||| ||||| ||||||| |  ||||||  |||||||    
T  29097771 gggtgatttagggtcaattttgacccaaagatcacccctccgatttgtttttccttctaccttaattgaataagtgatttc-acatattttctgttttct 29097869  T
Q  1085 ttcgtttatttttgtgatttcgtcgtctt 1113  Q
    || |||| |||||||||||||||||||||    
T  29097870 ttagtttgtttttgtgatttcgtcgtctt 29097898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 988 - 1112
Target Start/End: Complemental strand, 178244 - 178119
Alignment:
Q  988 ggtgatttagggtcaattttgaaccaaag-tcacc-ctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctt 1085  Q
    ||||||||| ||||||||||||  ||||  ||||| ||||||||| | ||||||| ||||| |||| ||||| ||||||| |  ||||||| ||||||||    
T  178244 ggtgatttaaggtcaattttgactcaaaaatcacctctccgagttgtgtttccttatatcctaattgaataagtgatttc-acatattttatgttttctt 178146  T
Q  1086 tcgtttatttttgtgatttcgtcgtct 1112  Q
    |||||| ||||||||||||||||||||    
T  178145 tcgtttgtttttgtgatttcgtcgtct 178119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 1020 - 1112
Target Start/End: Complemental strand, 39179932 - 39179841
Alignment:
Q  1020 ccctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtct 1112  Q
    |||||||| |||||||||||||||| | |||| ||||| ||||||| |  ||||||  |||||||||||||| ||||||||||||||||||||    
T  39179932 ccctccgaattatttttccttctattctaattgaataagtgatttc-acatattttctgttttctttcgtttgtttttgtgatttcgtcgtct 39179841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 988 - 1110
Target Start/End: Complemental strand, 12439771 - 12439649
Alignment:
Q  988 ggtgatttagggtcaattttgaaccaaag-tcaccctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttcttt 1086  Q
    ||||||||||||  |||||||| | |||  ||||||||||| || |||||| |||||||| | || ||||| ||||||| || ||||||  |||||||||    
T  12439771 ggtgatttagggataattttgacctaaaaatcaccctccgaattgtttttcattctatcctagttgaataagtgatttc-atatattttttgttttcttt 12439673  T
Q  1087 cgtttatttttgtgatttcgtcgt 1110  Q
    ||||| ||||||||||||||||||    
T  12439672 cgtttgtttttgtgatttcgtcgt 12439649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 987 - 1104
Target Start/End: Original strand, 43493854 - 43493972
Alignment:
Q  987 gggtgatttagggtcaattttgaacc-aaagtcacc-ctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 1084  Q
    ||||||||||||||||||||||| || ||| ||||| |||||| || ||||||||||||| | |||| ||||| |||||| ||  ||||||  |||||||    
T  43493854 gggtgatttagggtcaattttgatccaaaaatcacctctccgaattgtttttccttctattctaattgaataagtgattt-cacatattttttgttttct 43493952  T
Q  1085 ttcgtttatttttgtgattt 1104  Q
    ||||||| ||||||||||||    
T  43493953 ttcgtttgtttttgtgattt 43493972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 987 - 1112
Target Start/End: Original strand, 6281026 - 6281152
Alignment:
Q  987 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 1084  Q
    |||||||||| |||||||||||| |||||  |||||| || || |||||||||||||||| | |||| ||||| ||||||  |  ||||||   ||||||    
T  6281026 gggtgatttatggtcaattttgacccaaaaatcacccctctgaattatttttccttctattctaattgaataagtgatttt-acatattttctattttct 6281124  T
Q  1085 ttcgtttatttttgtgatttcgtcgtct 1112  Q
    ||||||| ||||||||||||||||||||    
T  6281125 ttcgtttgtttttgtgatttcgtcgtct 6281152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 987 - 1112
Target Start/End: Original strand, 28040611 - 28040737
Alignment:
Q  987 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 1084  Q
    |||||||||| |||||||||||| |||||  |||||| ||| | |  ||||||||| ||||| |||| ||||| ||||||| |  ||||||  |||||||    
T  28040611 gggtgatttacggtcaattttgacccaaaaatcacccctccaaatcgtttttccttatatcctaattgaataagtgatttc-acatattttctgttttct 28040709  T
Q  1085 ttcgtttatttttgtgatttcgtcgtct 1112  Q
    ||||||| ||||||||||||||||||||    
T  28040710 ttcgtttgtttttgtgatttcgtcgtct 28040737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 987 - 1112
Target Start/End: Complemental strand, 33164607 - 33164481
Alignment:
Q  987 gggtgatttagggtcaattttgaaccaaag-tcac-cctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 1084  Q
    |||||||||| ||||||||||||  ||||  |||| ||||||| || |||||||||||| |  |||| ||||| ||||||| |  ||||||  |||||||    
T  33164607 gggtgatttatggtcaattttgactcaaaaatcactcctccgaattgtttttccttctaccttaattgaataagtgatttc-acatattttctgttttct 33164509  T
Q  1085 ttcgtttatttttgtgatttcgtcgtct 1112  Q
    ||||||| ||||||||||||||||||||    
T  33164508 ttcgtttgtttttgtgatttcgtcgtct 33164481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 990 - 1112
Target Start/End: Original strand, 6635234 - 6635358
Alignment:
Q  990 tgatttagggtcaattttgaaccaaag-tcaccctcc--gagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttcttt 1086  Q
    |||||||||| ||||||||| |||||  ||||||||   ||||| ||||||||||||||  |||| ||||| ||||||| |  ||||||  |||||||||    
T  6635234 tgatttagggccaattttgacccaaaaatcaccctctctgagttgtttttccttctatcataattgaataagtgatttc-acatattttctgttttcttt 6635332  T
Q  1087 cgtttatttttgtgatttcgtcgtct 1112  Q
     |||| ||||||||||||||||||||    
T  6635333 agtttgtttttgtgatttcgtcgtct 6635358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 930 - 1112
Target Start/End: Complemental strand, 17096432 - 17096252
Alignment:
Q  930 ttctcttcttctcaaaccttaaccgtcggccatttcttcttattgtctattgaagaagggtgatttagggtcaattttgaaccaa-agtca-ccctccga 1027  Q
    |||||||||||||||||| ||   |||  |||||||||||| |||||      ||| ||||||||||||||||||||||| |||| | ||| |||||| |    
T  17096432 ttctcttcttctcaaaccctagttgtcacccatttcttcttcttgtc------agaggggtgatttagggtcaattttgacccaataatcacccctccca 17096339  T
Q  1028 ---gttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtct 1112  Q
       ||| ||||||||||||||| |||| ||||| |||||| ||  ||||||  |||| ||||||||| |||||||||||| |||||||    
T  17096338 gttgttttttttccttctatcctaattgaataagtgattt-cacatattttctgtttcctttcgtttgtttttgtgattttgtcgtct 17096252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 987 - 1110
Target Start/End: Complemental strand, 32347854 - 32347729
Alignment:
Q  987 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttattttt-ccttctatccaaattaaataattgatttccatgtattttaagttttc 1083  Q
    ||||||||||||||||| ||||| |||||  |||||| ||||| || ||||| |||||||||| |||| ||||| ||||||| |  ||||||  |||||     
T  32347854 gggtgatttagggtcaactttgacccaaaaatcacccctccgacttgttttttccttctatcctaattgaataagtgatttc-acatattttctgtttta 32347756  T
Q  1084 tttcgtttatttttgtgatttcgtcgt 1110  Q
    |||||||| ||||||||||||||||||    
T  32347755 tttcgtttgtttttgtgatttcgtcgt 32347729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 987 - 1113
Target Start/End: Original strand, 27241046 - 27241173
Alignment:
Q  987 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 1084  Q
    |||||||||| | |||||||||| |||||  |||||| || || || ||||||||| ||||| |||| ||||| ||||||| |  ||||||  |||||||    
T  27241046 gggtgatttatgatcaattttgacccaaaaatcacccctctgaattgtttttccttttatcctaattgaataagtgatttc-acatattttctgttttct 27241144  T
Q  1085 ttcgtttatttttgtgatttcgtcgtctt 1113  Q
    ||||||| ||||||| |||||||||||||    
T  27241145 ttcgtttgtttttgtaatttcgtcgtctt 27241173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 1033 - 1112
Target Start/End: Original strand, 3740387 - 3740465
Alignment:
Q  1033 ttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtct 1112  Q
    |||||||||||||| |||| ||||| ||||||| |  ||||||  |||||||||||||| ||| ||||||||||||||||    
T  3740387 ttttccttctatcctaattgaataagtgatttc-acatattttctgttttctttcgtttgtttgtgtgatttcgtcgtct 3740465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 1023 - 1112
Target Start/End: Original strand, 17687225 - 17687313
Alignment:
Q  1023 tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtct 1112  Q
    |||||||| ||||||||||||||  |||| ||||| | ||||| |  |||||| |||||||||| |||| ||||||||||||||| ||||    
T  17687225 tccgagttgtttttccttctatcttaattgaataagttatttc-acatattttcagttttcttttgtttgtttttgtgatttcgttgtct 17687313  T

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Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 990 - 1113
Target Start/End: Original strand, 34431045 - 34431169
Alignment:
Q  990 tgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctttc 1087  Q
    |||||||||||||||||||| |||||  |||||| | ||| || ||||| |||||||   |||| ||||| ||||||| |  ||||||  ||||||||||    
T  34431045 tgatttagggtcaattttgacccaaaaatcacccattcgaattgttttttcttctattttaattgaataagtgatttc-acatattttctgttttctttc 34431143  T
Q  1088 gtttatttttgtgatttcgtcgtctt 1113  Q
    ||||  ||||||||||||||||||||    
T  34431144 gtttgattttgtgatttcgtcgtctt 34431169  T

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Target: chr5; HSP #19
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 987 - 1107
Target Start/End: Complemental strand, 39531540 - 39531422
Alignment:
Q  987 gggtgatttagggtcaattttgaaccaaagtca-ccctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctt 1085  Q
    |||||||||| |||||||||||| ||||| ||| |||||||||||  |||||||||||||  |||| ||||| |||||| ||  || |||  ||||||||    
T  39531540 gggtgatttaaggtcaattttgacccaaaatcatccctccgagtt-gttttccttctatcgtaattgaataagtgattt-cacata-tttctgttttctt 39531444  T
Q  1086 tcgtttatttttgtgatttcgt 1107  Q
    | |||| |||||||||||||||    
T  39531443 ttgtttgtttttgtgatttcgt 39531422  T

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Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 987 - 1113
Target Start/End: Original strand, 20483168 - 20483295
Alignment:
Q  987 gggtgatttagggtcaattttgaaccaaag-tcaccctccgagttatttttccttctatccaaatta-aataattgatttccatgtattttaagttttct 1084  Q
    |||||||||||| |||||||||| |||||  ||||||||| | || ||||||||| ||| | ||||  ||||| ||||||| |  ||||||  ||||| |    
T  20483168 gggtgatttaggatcaattttgacccaaaaatcaccctccaaattgtttttccttttattctaatttgaataagtgatttc-acatattttctgttttgt 20483266  T
Q  1085 ttcgtttatttttgtgatttcgtcgtctt 1113  Q
    || |||| |||||||||||||||||||||    
T  20483267 tttgtttgtttttgtgatttcgtcgtctt 20483295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 1032 - 1112
Target Start/End: Complemental strand, 23882208 - 23882129
Alignment:
Q  1032 tttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtct 1112  Q
    |||||| ||||||||||||| ||||| ||||||  |  |||||||  |||||| |||||| ||||||||||||||||||||    
T  23882208 tttttctttctatccaaattgaataagtgatttg-acatattttatattttctatcgtttgtttttgtgatttcgtcgtct 23882129  T

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Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 1033 - 1112
Target Start/End: Original strand, 12891706 - 12891784
Alignment:
Q  1033 ttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtct 1112  Q
    |||||||| ||||| |||| ||||| ||||||| |  ||||||  |||||||||||||| ||||||||||||||| ||||    
T  12891706 ttttccttttatcctaattgaataagtgatttc-acatattttctgttttctttcgtttgtttttgtgatttcgttgtct 12891784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 990 - 1042
Target Start/End: Complemental strand, 11824970 - 11824917
Alignment:
Q  990 tgatttagggtcaattttgaaccaaagtca-ccctccgagttatttttccttct 1042  Q
    ||||||| |||||||||||| ||||| ||| |||||||| ||||||||||||||    
T  11824970 tgatttaaggtcaattttgatccaaaatcatccctccgaattatttttccttct 11824917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 1027 - 1112
Target Start/End: Original strand, 18653806 - 18653890
Alignment:
Q  1027 agttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtct 1112  Q
    |||| ||||| ||| ||||| |||| ||||| |||||||  | ||||||  | |||||||||||| ||||||||||||||||||||    
T  18653806 agttgttttttcttatatcctaattgaataagtgatttcg-tatattttctgatttctttcgtttgtttttgtgatttcgtcgtct 18653890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1379 (Bit Score: 51; Significance: 1e-19; HSPs: 2)
Name: scaffold1379
Description:

Target: scaffold1379; HSP #1
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 920 - 1112
Target Start/End: Complemental strand, 1292 - 1099
Alignment:
Q  920 tttctctcgcttctcttcttctcaaaccttaaccgtcggccatttcttcttattgtctattgaagaagggtgatttagggtcaattttgaaccaaag-tc 1018  Q
    |||||||| ||||| | | ||||||||| || |||||| || ||||||||| || | | |   ||| |||||||||| |||||||||||| |||||  ||    
T  1292 tttctctctcttctatccatctcaaaccctagccgtcgcccctttcttctttttctttttgtcagaggggtgatttaaggtcaattttgacccaaaaatc 1193  T
Q  1019 accc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtct 1112  Q
    |||| | ||| || |||||||||||| || |||| ||||| ||||||| |  |||||| ||||||||||||||| ||||||||||||||||||||    
T  1192 acccctgcgaattgtttttccttctaccctaattgaataagtgatttc-acatattttcagttttctttcgtttgtttttgtgatttcgtcgtct 1099  T

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Target: scaffold1379; HSP #2
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 1032 - 1112
Target Start/End: Original strand, 4 - 83
Alignment:
Q  1032 tttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtct 1112  Q
    ||||||||||||||  |||| ||||| ||||||| |  ||||||  ||||||||| |||||||||||||||||||||||||    
T  4 tttttccttctatcttaattgaataagtgatttc-acatattttttgttttcttttgtttatttttgtgatttcgtcgtct 83  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0294 (Bit Score: 49; Significance: 2e-18; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 983 - 1113
Target Start/End: Complemental strand, 4209 - 4079
Alignment:
Q  983 agaagggtgatttagggtcaattttga-accaaagtcac-cctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagtt 1080  Q
    |||||| |||||||||||||||||||| || ||| |||| |||  ||||| | || |||||||||| |||||||||| ||||||| |  ||||||| |||    
T  4209 agaaggctgatttagggtcaattttgacacaaaaatcactcctttgagttgtctt-ccttctatcctaattaaataagtgatttc-acatattttatgtt 4112  T
Q  1081 ttctttcgtttatttttgtgatttcgtcgtctt 1113  Q
    ||||||||||| |||||||||||||||||||||    
T  4111 ttctttcgtttgtttttgtgatttcgtcgtctt 4079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0536 (Bit Score: 43; Significance: 0.000000000000007; HSPs: 1)
Name: scaffold0536
Description:

Target: scaffold0536; HSP #1
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 987 - 1112
Target Start/End: Original strand, 2882 - 3010
Alignment:
Q  987 gggtgatttagggtcaattttgaaccaa-agtca-ccctccgagt--tatttttccttctatccaaattaaataattgatttccatgtattttaagtttt 1082  Q
    ||||||||||||||||||||||| |||| | ||| ||||||||||  | ||||||||||||||| |||| ||||| |||||| ||  ||||||  ||||     
T  2882 gggtgatttagggtcaattttgacccaataatcacccctccgagttgtttttttccttctatcctaattgaataagtgattt-cacatattttctgtttc 2980  T
Q  1083 ctttcgtttatttttgtgatttcgtcgtct 1112  Q
    ||||||||| |||||||||||| |||||||    
T  2981 ctttcgtttgtttttgtgattttgtcgtct 3010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0321 (Bit Score: 41; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0321
Description:

Target: scaffold0321; HSP #1
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 1020 - 1112
Target Start/End: Complemental strand, 7228 - 7137
Alignment:
Q  1020 ccctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtct 1112  Q
    |||||||| || ||||||||| ||||| |||| ||||| ||||||| |  ||||||  |||||||||||||| ||||||||||||||||||||    
T  7228 ccctccgaattgtttttccttttatcctaattgaataagtgatttc-acatattttctgttttctttcgtttgtttttgtgatttcgtcgtct 7137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0056 (Bit Score: 39; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0056
Description:

Target: scaffold0056; HSP #1
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 989 - 1113
Target Start/End: Original strand, 74148 - 74273
Alignment:
Q  989 gtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttcttt 1086  Q
    |||||||||  |||||||||| |||||  |||||| ||||| || ||||||||||||||| |||| ||||| ||||||| |  ||||||  |||||||||    
T  74148 gtgatttagaatcaattttgacccaaaaatcacccatccgaattgtttttccttctatcctaattgaataagtgatttc-acatattttctgttttcttt 74246  T
Q  1087 cgtttatttttgtgatttcgtcgtctt 1113  Q
    ||||| ||||||||||||  |||||||    
T  74247 cgtttgtttttgtgattttttcgtctt 74273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0432 (Bit Score: 36; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0432
Description:

Target: scaffold0432; HSP #1
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 987 - 1105
Target Start/End: Complemental strand, 2555 - 2438
Alignment:
Q  987 gggtgatttagggtcaattttgaaccaaag-tcaccctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctt 1085  Q
    |||||||||||||||| |||||| |||||  |||||||| ||||| ||||||||||||||  |||  ||||| |||||| ||  ||||||  ||||||||    
T  2555 gggtgatttagggtcatttttgacccaaaaatcaccctctgagttgtttttccttctatcataatcgaataagtgattt-cacatattttctgttttctt 2457  T
Q  1086 tcgtttatttttgtgatttc 1105  Q
    ||||||  ||||||||||||    
T  2456 tcgttt-gttttgtgatttc 2438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1350 (Bit Score: 35; Significance: 0.0000000004; HSPs: 1)
Name: scaffold1350
Description:

Target: scaffold1350; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 1070 - 1112
Target Start/End: Original strand, 1640 - 1682
Alignment:
Q  1070 tattttaagttttctttcgtttatttttgtgatttcgtcgtct 1112  Q
    ||||||| |||||||||||||| ||||||||||||||||||||    
T  1640 tattttatgttttctttcgtttgtttttgtgatttcgtcgtct 1682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 32; Significance: 0.00000003; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 991 - 1112
Target Start/End: Complemental strand, 404393 - 404271
Alignment:
Q  991 gatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcg 1088  Q
    |||||| |||||||||||| |||||  |||||| ||||| |  |||||| | |||||| |||| ||||| ||||||| |  ||||||  |||||||| ||    
T  404393 gatttaaggtcaattttgatccaaaaatcacccatccgaatagtttttcttgctatcctaattgaataagtgatttc-acatattttctgttttcttccg 404295  T
Q  1089 tttatttttgtgatttcgtcgtct 1112  Q
    ||| ||||||||||||||||||||    
T  404294 tttgtttttgtgatttcgtcgtct 404271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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