View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11433_high_12 (Length: 464)

Name: NF11433_high_12
Description: NF11433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11433_high_12
NF11433_high_12
[»] chr7 (3 HSPs)
chr7 (14-442)||(32413543-32413975)
chr7 (72-144)||(45498200-45498272)
chr7 (83-145)||(6889134-6889196)
[»] chr6 (8 HSPs)
chr6 (72-180)||(7115535-7115647)
chr6 (72-180)||(7120607-7120719)
chr6 (72-180)||(7124011-7124123)
chr6 (83-177)||(8656643-8656741)
chr6 (83-173)||(7175430-7175524)
chr6 (72-157)||(7140752-7140837)
chr6 (72-157)||(8680366-8680451)
chr6 (112-153)||(33844310-33844351)
[»] chr8 (1 HSPs)
chr8 (96-270)||(27701805-27701983)
[»] chr3 (9 HSPs)
chr3 (60-157)||(7104294-7104391)
chr3 (53-171)||(4149545-4149667)
chr3 (53-171)||(4165317-4165439)
chr3 (60-147)||(2996512-2996599)
chr3 (83-150)||(7177938-7178005)
chr3 (72-157)||(476016-476101)
chr3 (119-157)||(25601731-25601769)
chr3 (72-186)||(7125904-7126021)
chr3 (60-157)||(7177801-7177898)
[»] chr1 (1 HSPs)
chr1 (72-144)||(14288925-14288997)
[»] chr4 (3 HSPs)
chr4 (50-157)||(3978055-3978162)
chr4 (120-152)||(29676507-29676539)
chr4 (81-157)||(52186813-52186889)
[»] chr5 (3 HSPs)
chr5 (81-157)||(25064237-25064313)
chr5 (53-118)||(38142201-38142266)
chr5 (72-124)||(7022045-7022097)
[»] chr2 (1 HSPs)
chr2 (96-157)||(43864075-43864136)
[»] scaffold0896 (1 HSPs)
scaffold0896 (112-177)||(1474-1543)


Alignment Details
Target: chr7 (Bit Score: 380; Significance: 0; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 14 - 442
Target Start/End: Original strand, 32413543 - 32413975
Alignment:
Q  14 atgaagaaacgaaagcttgaacataacagcaataatagcgaaaatcaagacagactcggtgatttatctgattgtgttttacttcacatactctcctctt 113  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  32413543 atgaagaaacgaaagcttgaacataacagcaataatagtgaaaatcaagacagactcagtgatttatctgattgtgttttacttcacatactctcctctt 32413642  T
Q  114 tgaacaccaaacacgccgttcaaacttgcattttgtccacaaga----agaatctctggaagcgtcttccatcccttgcgttaaggtcttcagactttag 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32413643 tgaacaccaaacacgccgttcaaacttgcattttgtccacaagatggaagaatctctggaagcgtcttccatcccttgcgttaaggtcttcagactttag 32413742  T
Q  210 aaatgtcaagagattcgcgaaattcgtgtctcgagttttgtctcttcgaaatgactcaacctcattgcatactgtggatttttgccgcactgcaatcgta 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32413743 aaatgtcaagagattcgcgaaattcgtgtctcgagttttgtctcttcgaaatgactcaacctcattgcatactgtggatttttgccgcactgcaatcgta 32413842  T
Q  310 gagccttacctactnnnnnnnnttgtaaaatatgctgtttcgcacaacgtccagcaattagatatatctgttgctggtaatatggaatactttccaccta 409  Q
    ||||||||||||||        ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  32413843 gagccttacctactcaaaaaaattgtaaaatatgctgtttcgcacaacgtccagcaattagatgtatctgttgctggtaatatggaatactttccaccta 32413942  T
Q  410 gtttcttttcttgtcggactttaacgtctctta 442  Q
    |||||||||||||||||||||||||||||||||    
T  32413943 gtttcttttcttgtcggactttaacgtctctta 32413975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 72 - 144
Target Start/End: Complemental strand, 45498272 - 45498200
Alignment:
Q  72 gtgatttatctgattgtgttttacttcacatactctcctctttgaacaccaaacacgccgttcaaacttgcat 144  Q
    |||||||| ||||||| ||||||||||||||  | || | |||||| ||||||  ||||||||||||||||||    
T  45498272 gtgatttacctgattgcgttttacttcacattatgtcttttttgaaaaccaaatgcgccgttcaaacttgcat 45498200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 83 - 145
Target Start/End: Original strand, 6889134 - 6889196
Alignment:
Q  83 gattgtgttttacttcacatactctcctctttgaacaccaaacacgccgttcaaacttgcatt 145  Q
    ||||||||| | |||||||||||||| | |||| |||||| | |||| |||||||||||||||    
T  6889134 gattgtgttattcttcacatactctcttttttggacaccatagacgctgttcaaacttgcatt 6889196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 60; Significance: 2e-25; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 72 - 180
Target Start/End: Complemental strand, 7115647 - 7115535
Alignment:
Q  72 gtgatttatctgattgtgttttacttcacatactctcctctttgaacaccaaacacgccgttcaaacttgcattttgtccacaa----gaagaatctctg 167  Q
    |||||||| |||||||||||||||||||||||||||| | ||||||||||||| |||| |||||||||||  ||||||||| ||    ||||||||||||    
T  7115647 gtgatttacctgattgtgttttacttcacatactctcttttttgaacaccaaatacgcagttcaaacttgtgttttgtccaaaagatggaagaatctctg 7115548  T
Q  168 gaagcgtcttcca 180  Q
    |||| ||||||||    
T  7115547 gaagtgtcttcca 7115535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 72 - 180
Target Start/End: Complemental strand, 7120719 - 7120607
Alignment:
Q  72 gtgatttatctgattgtgttttacttcacatactctcctctttgaacaccaaacacgccgttcaaacttgcattttgtccacaa----gaagaatctctg 167  Q
    |||||||| |||||||||||||||||||||||||||| | ||||||||||||| |||| |||||||||||  ||||||||| ||    ||||||||||||    
T  7120719 gtgatttacctgattgtgttttacttcacatactctcttttttgaacaccaaatacgcagttcaaacttgtgttttgtccaaaagatggaagaatctctg 7120620  T
Q  168 gaagcgtcttcca 180  Q
    |||| ||||||||    
T  7120619 gaagtgtcttcca 7120607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 72 - 180
Target Start/End: Complemental strand, 7124123 - 7124011
Alignment:
Q  72 gtgatttatctgattgtgttttacttcacatactctcctctttgaacaccaaacacgccgttcaaacttgcattttgtccacaa----gaagaatctctg 167  Q
    |||||||| |||||||||||||||||||||||||||| | ||||||||||||| |||| |||||||||||  ||||||||| ||    ||||||||||||    
T  7124123 gtgatttacctgattgtgttttacttcacatactctcttttttgaacaccaaatacgcagttcaaacttgtgttttgtccaaaagatggaagaatctctg 7124024  T
Q  168 gaagcgtcttcca 180  Q
    |||| ||||||||    
T  7124023 gaagtgtcttcca 7124011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 83 - 177
Target Start/End: Complemental strand, 8656741 - 8656643
Alignment:
Q  83 gattgtgttttacttcacatactctcctctttgaacaccaaacacgccgttcaaacttgcattttgtccacaa----gaagaatctctggaagcgtctt 177  Q
    |||||||||||||||||||||||||| | ||||||||||||| |||| |||||||||||  ||||| ||| ||    ||||||||||||||||||||||    
T  8656741 gattgtgttttacttcacatactctcttttttgaacaccaaatacgcagttcaaacttgtgttttggccaaaagatggaagaatctctggaagcgtctt 8656643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 83 - 173
Target Start/End: Complemental strand, 7175524 - 7175430
Alignment:
Q  83 gattgtgttttacttcacatactctcctctttgaacaccaaacacgccgttcaaacttgcattttgtccacaa----gaagaatctctggaagcg 173  Q
    ||||||||||||||||||||||||||||  || || ||||| ||||| ||||||||||||||||| ||||| |    ||||||||||||||||||    
T  7175524 gattgtgttttacttcacatactctccttgttaaaaaccaagcacgcagttcaaacttgcattttatccactagatggaagaatctctggaagcg 7175430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 72 - 157
Target Start/End: Complemental strand, 7140837 - 7140752
Alignment:
Q  72 gtgatttatctgattgtgttttacttcacatactctcctctttgaacaccaaacacgccgttcaaacttgcattttgtccacaaga 157  Q
    |||||||| | || ||||||||||||||||||||||| | |||||| || ||| |||| ||||||||||| |||||||||| ||||    
T  7140837 gtgatttacccgactgtgttttacttcacatactctcttttttgaatactaaatacgcagttcaaacttgtattttgtccaaaaga 7140752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 72 - 157
Target Start/End: Complemental strand, 8680451 - 8680366
Alignment:
Q  72 gtgatttatctgattgtgttttacttcacatactctcctctttgaacaccaaacacgccgttcaaacttgcattttgtccacaaga 157  Q
    |||||||| | || ||||||||||||||||||||||| | |||||| || ||| |||| ||||||||||| |||||||||| ||||    
T  8680451 gtgatttagccgactgtgttttacttcacatactctcttttttgaatactaaatacgcagttcaaacttgtattttgtccaaaaga 8680366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 112 - 153
Target Start/End: Complemental strand, 33844351 - 33844310
Alignment:
Q  112 tttgaacaccaaacacgccgttcaaacttgcattttgtccac 153  Q
    |||||| ||| || ||||||||||||||||||||||||||||    
T  33844351 tttgaaaaccgaaaacgccgttcaaacttgcattttgtccac 33844310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 96 - 270
Target Start/End: Complemental strand, 27701983 - 27701805
Alignment:
Q  96 ttcacatactctcctctttgaacaccaaacacgccgttcaaacttgcattttgtccacaagaag----aatctctggaagcgtcttccatcccttgcgtt 191  Q
    |||||||||||||||||||  | |||||||| ||||||||||||  |||| | ||||||||| |    ||||||||||| ||||||||| |||||   ||    
T  27701983 ttcacatactctcctctttagaaaccaaacatgccgttcaaactaccattctttccacaagatggaacaatctctggaaacgtcttccaacccttagatt 27701884  T
Q  192 aaggtcttcagactttagaaatgtcaagagattcgcgaaattcgtgtctcgagttttgtctcttcgaaatgactcaacc 270  Q
    ||  || ||| |||||| || | ||||||| ||  | |||||||||||||| ||||||||||||||  |||||||||||    
T  27701883 aaactcctcacactttaaaactctcaagagttttaccaaattcgtgtctcgggttttgtctcttcgcgatgactcaacc 27701805  T

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Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 60 - 157
Target Start/End: Complemental strand, 7104391 - 7104294
Alignment:
Q  60 aagacagactcggtgatttatctgattgtgttttacttcacatactctcctctttgaacaccaaacacgccgttcaaacttgcattttgtccacaaga 157  Q
    ||||||||||| |||||||  | || |||||| | |||| |||||||||||||||| | |||||||| ||||||||||| ||| ||||||| ||||||    
T  7104391 aagacagactcagtgatttgccggactgtgttcttcttcgcatactctcctctttgcataccaaacaagccgttcaaacatgcgttttgtctacaaga 7104294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 53 - 171
Target Start/End: Original strand, 4149545 - 4149667
Alignment:
Q  53 gaaaatcaagacagactcggtgatttatctgattgtgttttacttcacatactctcctctttgaacaccaaacacgccgttcaaacttgcattttgtcca 152  Q
    |||||| |||||||| || |||||||| |  ||||||| ||||||| |||||| ||   ||||||||||||| | ||||||||||| ||| |||||||||    
T  4149545 gaaaatgaagacagaatcagtgatttaccgaattgtgtgttacttctcatactgtcgattttgaacaccaaagaggccgttcaaacctgcgttttgtcca 4149644  T
Q  153 caa----gaagaatctctggaag 171  Q
    | |    ||||||||||||||||    
T  4149645 cgagatggaagaatctctggaag 4149667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 53 - 171
Target Start/End: Original strand, 4165317 - 4165439
Alignment:
Q  53 gaaaatcaagacagactcggtgatttatctgattgtgttttacttcacatactctcctctttgaacaccaaacacgccgttcaaacttgcattttgtcca 152  Q
    |||||| |||||||| || |||||||| |  ||||||| ||||||| |||||| ||   ||||||||||||| | ||||||||||| ||| |||||||||    
T  4165317 gaaaatgaagacagaatcagtgatttaccgaattgtgtgttacttctcatactgtcgattttgaacaccaaagaggccgttcaaacctgcgttttgtcca 4165416  T
Q  153 caa----gaagaatctctggaag 171  Q
    | |    ||||||||||||||||    
T  4165417 cgagatggaagaatctctggaag 4165439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 60 - 147
Target Start/End: Complemental strand, 2996599 - 2996512
Alignment:
Q  60 aagacagactcggtgatttatctgattgtgttttacttcacatactctcctctttgaacaccaaacacgccgttcaaacttgcatttt 147  Q
    ||||||| ||| |||| ||| ||||||||||| | ||||||||||| || | ||||||||| ||| | || |||||||||||||||||    
T  2996599 aagacaggctcagtgacttaactgattgtgttatccttcacatactttcatttttgaacacaaaagatgcagttcaaacttgcatttt 2996512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 83 - 150
Target Start/End: Original strand, 7177938 - 7178005
Alignment:
Q  83 gattgtgttttacttcacatactctcctctttgaacaccaaacacgccgttcaaacttgcattttgtc 150  Q
    ||||||||| |||||||||||| ||||| ||||||||||||| ||||  ||||||||||  |||||||    
T  7177938 gattgtgttctacttcacatacactcctttttgaacaccaaatacgcttttcaaacttgtgttttgtc 7178005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 72 - 157
Target Start/End: Original strand, 476016 - 476101
Alignment:
Q  72 gtgatttatctgattgtgttttacttcacatactctcctctttgaacaccaaacacgccgttcaaacttgcattttgtccacaaga 157  Q
    |||||||||| |||||| || | ||||||| |||||||| ||| ||| ||||| | |||||||||||||| ||||| |||| ||||    
T  476016 gtgatttatcagattgtattctccttcacacactctcctttttaaacgccaaagaagccgttcaaacttgtattttatccaaaaga 476101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 119 - 157
Target Start/End: Original strand, 25601731 - 25601769
Alignment:
Q  119 accaaacacgccgttcaaacttgcattttgtccacaaga 157  Q
    |||||||| || |||||||||||||||||||||||||||    
T  25601731 accaaacatgctgttcaaacttgcattttgtccacaaga 25601769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 72 - 186
Target Start/End: Original strand, 7125904 - 7126021
Alignment:
Q  72 gtgatttatctgattgtgttttacttcacatactctcctctttgaacaccaaacacgccgttcaaacttgcattttgtccacaaga----agaatctctg 167  Q
    |||||||| | ||||||||| | ||||| |||||||| |||||| | || ||||  ||| |||||||||| || ||||||| ||||    ||||||||||    
T  7125904 gtgatttacccgattgtgttcttcttcaaatactctc-tctttggatactaaactagccattcaaacttgtatcttgtccaaaagatggaagaatctctg 7126002  T
Q  168 gaagcgtcttccatccctt 186  Q
    ||| ||||||||| |||||    
T  7126003 gaaacgtcttccaaccctt 7126021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 60 - 157
Target Start/End: Original strand, 7177801 - 7177898
Alignment:
Q  60 aagacagactcggtgatttatctgattgtgttttacttcacatactctcctctttgaacaccaaacacgccgttcaaacttgcattttgtccacaaga 157  Q
    |||| |||||| | |||||| |||||||| || | ||  |||||||||||| ||||||||||||||| |   |||||||||||||  |||||| ||||    
T  7177801 aagatagactcagcgatttacctgattgtattcttctgtacatactctcctttttgaacaccaaacaggttattcaaacttgcatactgtccataaga 7177898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 72 - 144
Target Start/End: Complemental strand, 14288997 - 14288925
Alignment:
Q  72 gtgatttatctgattgtgttttacttcacatactctcctctttgaacaccaaacacgccgttcaaacttgcat 144  Q
    |||||||| ||||||| ||||||||||||||  | || | |||||| |||||| |||||||||||||||||||    
T  14288997 gtgatttacctgattgcgttttacttcacattatgtcttttttgaaaaccaaatacgccgttcaaacttgcat 14288925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 50 - 157
Target Start/End: Original strand, 3978055 - 3978162
Alignment:
Q  50 agcgaaaatcaagacagactcggtgatttatctgattgtgttttacttcacatactctcctctttgaacaccaaacacgccgttcaaacttgcattttgt 149  Q
    ||||||||| ||||||||||| | || ||| ||||  |  || | |||||||||||||| | ||| |||||||| ||||| |||||||||||| |||| |    
T  3978055 agcgaaaatgaagacagactcagcgacttacctgaaagcattattcttcacatactctcgtttttaaacaccaaccacgcggttcaaacttgcgttttat 3978154  T
Q  150 ccacaaga 157  Q
    ||||||||    
T  3978155 ccacaaga 3978162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 120 - 152
Target Start/End: Original strand, 29676507 - 29676539
Alignment:
Q  120 ccaaacacgccgttcaaacttgcattttgtcca 152  Q
    ||||||||| |||||||||||||||||||||||    
T  29676507 ccaaacacgtcgttcaaacttgcattttgtcca 29676539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 81 - 157
Target Start/End: Original strand, 52186813 - 52186889
Alignment:
Q  81 ctgattgtgttttacttcacatactctcctctttgaacaccaaacacgccgttcaaacttgcattttgtccacaaga 157  Q
    |||||| |||| | || ||| ||||||||| | ||||| | ||||| ||||||||||| ||||||||||||| ||||    
T  52186813 ctgattctgttctcctccacctactctcctttctgaacgcaaaacaggccgttcaaacctgcattttgtccaaaaga 52186889  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 81 - 157
Target Start/End: Original strand, 25064237 - 25064313
Alignment:
Q  81 ctgattgtgttttacttcacatactctcctctttgaacaccaaacacgccgttcaaacttgcattttgtccacaaga 157  Q
    ||||||||||| |||||||||||||||||| | |  |||||||||| || || ||||| ||||| |||||| |||||    
T  25064237 ctgattgtgttctacttcacatactctcctttctagacaccaaacatgcagtccaaacatgcatattgtccccaaga 25064313  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 53 - 118
Target Start/End: Complemental strand, 38142266 - 38142201
Alignment:
Q  53 gaaaatcaagacagactcggtgatttatctgattgtgttttacttcacatactctcctctttgaac 118  Q
    |||||| ||||||||||| | || ||| |||| |||||| | |||||||||||||||| |||||||    
T  38142266 gaaaatgaagacagactcagcgacttacctgactgtgttatccttcacatactctcctttttgaac 38142201  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 72 - 124
Target Start/End: Original strand, 7022045 - 7022097
Alignment:
Q  72 gtgatttatctgattgtgttttacttcacatactctcctctttgaacaccaaa 124  Q
    |||||||| || ||||| || |||||||||||||||||| |||| ||||||||    
T  7022045 gtgatttacctaattgtcttgtacttcacatactctcctttttggacaccaaa 7022097  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 96 - 157
Target Start/End: Complemental strand, 43864136 - 43864075
Alignment:
Q  96 ttcacatactctcctctttgaacaccaaacacgccgttcaaacttgcattttgtccacaaga 157  Q
    |||||||||| |||| ||||||  | ||| | ||||||||||||||||||||||||| ||||    
T  43864136 ttcacatactgtcctttttgaatgcaaaaaaggccgttcaaacttgcattttgtccaaaaga 43864075  T

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Target: scaffold0896 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0896
Description:

Target: scaffold0896; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 112 - 177
Target Start/End: Original strand, 1474 - 1543
Alignment:
Q  112 tttgaacaccaaacacgccgttcaaacttgcattttgtccacaa----gaagaatctctggaagcgtctt 177  Q
    ||||||||||||| |||| |||||||||||  ||||| ||| ||    ||||||||||||||||||||||    
T  1474 tttgaacaccaaatacgcagttcaaacttgtgttttggccaaaagatggaagaatctctggaagcgtctt 1543  T

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