View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11433_high_16 (Length: 398)
Name: NF11433_high_16
Description: NF11433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11433_high_16 |
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Alignment Details
Target: chr3 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 1 - 370
Target Start/End: Original strand, 1516811 - 1517180
Alignment:
| Q |
1 |
tctagtatctggtcgactaagtgccttgaaagaaggttttccttagagtattggaaggagcgatcagattccaggttggaaggcaccatggcttcgaaaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1516811 |
tctagtatctggtcgactaagtgccttgaaagaaggttttccttagagtattggaaggagcgatcagattccaggttggaaggcaccatggcttcgaaaa |
1516910 |
T |
|
| Q |
101 |
ggttctcttcttaagtgctcggctcatctttctccatcatggtcagatctgtgtcgaagacttgctacatcaccattccaagtcttggcatgttgaagtg |
200 |
Q |
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| T |
1516911 |
ggttctcttcttaagtgctcggctcatctttctccatcatggtcagatctgtgtcgaagacttgctacatcaccattccaagtcttggcatgttgaagtg |
1517010 |
T |
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| Q |
201 |
atttgaggtatgttccataccactatggcttataatattaatgatattttgctatattcccagttnnnnnnnntaggattacttggtatcctgagattgt |
300 |
Q |
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| T |
1517011 |
atttgaggtatgttccataccactatggcttataatattaatgatattttgctatattcccagttaaaaaaaataggattacttggtatcctgagattgt |
1517110 |
T |
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| Q |
301 |
cgcctcttatttgatgaagtcggcatataggctagctacggctcatcttgtggacacaagtgaacttcat |
370 |
Q |
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| T |
1517111 |
cgcctcttatttgatgaagtcggcatataggctagctacggctcatcttgtggacacaagtgaacttcat |
1517180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 162; Significance: 2e-86; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 2 - 370
Target Start/End: Original strand, 2908151 - 2908515
Alignment:
| Q |
2 |
ctagtatctggtcgactaagtgccttg--aaagaaggttttccttagagtattggaaggagcgatcagattccaggttggaaggcaccatggcttcgaaa |
99 |
Q |
| |
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||||||||||||| |||||||||||| |||||||||||||| |||||| |||||||||| | ||| |||||||||||||||| || |||| | |||| |
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| T |
2908151 |
ctagtatctggtcagctaagtgccttgtgaaagaaggttttccgtagagttttggaaggagtggtcatattccaggttggaaggtacattggcattgaaa |
2908250 |
T |
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| Q |
100 |
aggttctcttcttaagtgctcggctcatctttctccatcatggtcagatct--gtgtcgaagacttgctacatcaccattccaagtcttggcatgttgaa |
197 |
Q |
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||||| ||||| || ||||||| |||||| | |||||||||||| |||||||||||||||| ||||||||||||||| |||||||||||||| |
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| T |
2908251 |
aggtt--------aagtgttcagctcatccttctccgttatggtcagatctttgtgtcgaagacttgctgcatcaccattccaaggcttggcatgttgaa |
2908342 |
T |
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| Q |
198 |
gtgatttgaggtatgttccataccactatggcttataatattaatgatattttgctatattcccagttnnnnnnnntaggattacttggtatcctgagat |
297 |
Q |
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||||||||||||||| | | ||||||||||| ||||||||||| || |||| ||||||||||||||| |||||||||||||||||||||||| |
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| T |
2908343 |
gtgatttgaggtatgcttcctaccactatggtttataatattattggcatttcgctatattcccagttaaagcaaataggattacttggtatcctgagat |
2908442 |
T |
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| Q |
298 |
tgtcgcctcttatttgatgaagtcggcatataggctagctacggctcatcttgtggacacaagtgaacttcat |
370 |
Q |
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||| ||||||||| ||||||||||||||||||||||| || |||||| ||||||||||||||||||||||| |
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| T |
2908443 |
tgtgacctcttattcgatgaagtcggcatataggctagttatcgctcattttgtggacacaagtgaacttcat |
2908515 |
T |
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