View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11433_high_21 (Length: 303)
Name: NF11433_high_21
Description: NF11433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11433_high_21 |
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Alignment Details
Target: chr1 (Bit Score: 271; Significance: 1e-151; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 20 - 298
Target Start/End: Complemental strand, 30757434 - 30757156
Alignment:
| Q |
20 |
atggatccattgcctaccttgaataagaatttctctttggttttacaagaagaaagtaaaaatacttctcttctttcactcccttctcttgctgaagata |
119 |
Q |
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| T |
30757434 |
atggatccattgcctaccttgaataagaatttctctttggttttacaagaagaaagtaataatacttctcttctttcactcccttctcttgctgaagata |
30757335 |
T |
|
| Q |
120 |
atgtgcttgttaatgcatatgatgcaaagaaaccttaagggcgtggtaaatgttcattcactaaaccttcatcaaggttttgcattttttgaaatagaca |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30757334 |
atgtgcttgttaatgcatatgatgcaaagaaaccttaagggcgtggtaaatgttcattcactaaaccttcatcaaggttttgcattttttgaaatagaca |
30757235 |
T |
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| Q |
220 |
caatcacacaattgactttttctatcaaaagcatggctatcctaatgtgaacaagaagatttcacaggcctatgctact |
298 |
Q |
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| T |
30757234 |
caatcacacaattgactttttctatcaaaagcatggctatcctaatgtgaacaagaagatttcacaggccaatgctact |
30757156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 20 - 298
Target Start/End: Complemental strand, 30764886 - 30764608
Alignment:
| Q |
20 |
atggatccattgcctaccttgaataagaatttctctttggttttacaagaagaaagtaaaaatacttctcttctttcactcccttctcttgctgaagata |
119 |
Q |
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| T |
30764886 |
atggatccattgcctaccttgaataagaatttctctttggttttacaagaagaaagtaataatacttctcttctttcactcccttctcttgctgaagata |
30764787 |
T |
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| Q |
120 |
atgtgcttgttaatgcatatgatgcaaagaaaccttaagggcgtggtaaatgttcattcactaaaccttcatcaaggttttgcattttttgaaatagaca |
219 |
Q |
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| T |
30764786 |
atgtgcttgttaatgcatatgatgcaaagaaaccttaagggcgtggtaaatgttcattcactaaaccttcatcaaggttttgcattttttgaaatagaca |
30764687 |
T |
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| Q |
220 |
caatcacacaattgactttttctatcaaaagcatggctatcctaatgtgaacaagaagatttcacaggcctatgctact |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
30764686 |
caatcacacaattgactttttctatcaaaagcatggctatcctaatgtgaacaagaagatttcacaggccaatgctact |
30764608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 32 - 278
Target Start/End: Original strand, 25227198 - 25227444
Alignment:
| Q |
32 |
cctaccttgaataagaatttctctttggttttacaagaagaaagtaaaaatacttctcttctttcactcccttctcttgctgaagataatgtgcttgtta |
131 |
Q |
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||||||||||| ||| ||||| ||||||||| ||||||||||||| ||| ||||| | | |||| | ||||| |||| || |||||||| ||||||| |
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| T |
25227198 |
cctaccttgaacaaggttttctttttggttttgcaagaagaaagtagcaatgcttctttaccttcaattccttcccttgtcgaggataatgtacttgtta |
25227297 |
T |
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| Q |
132 |
atgcatatgatgcaaagaaaccttaagggcgtggtaaatgttcattcactaaaccttcatcaaggttttgcattttttgaaatagacacaatcacacaat |
231 |
Q |
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||||||||||||| |||||||| |||||| ||||||| ||||||||||||||||||||||||||||||| | ||||| ||||| ||||||||||| || |
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| T |
25227298 |
atgcatatgatgcgaagaaaccacaagggcatggtaaaggttcattcactaaaccttcatcaaggttttgtaccttttgcaataggcacaatcacaccat |
25227397 |
T |
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| Q |
232 |
tgactttttctatcaaaagcatggctatcctaatgtgaacaagaaga |
278 |
Q |
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||| |||| ||| |||| ||| | |||| ||||||||| ||||||| |
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| T |
25227398 |
tgatttttgttataaaaaacattgatatcttaatgtgaataagaaga |
25227444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 155 - 274
Target Start/End: Complemental strand, 20700552 - 20700433
Alignment:
| Q |
155 |
taagggcgtggtaaatgttcattcactaaaccttcatcaaggttttgcattttttgaaatagacacaatcacacaattgactttttctatcaaaagcatg |
254 |
Q |
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|||||||||| |||| | |||| || ||||||||| ||||||| ||||| ||||| || | | ||||||||| ||| ||||| ||||||||||||| |
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| T |
20700552 |
taagggcgtgataaaggatcatacattaaaccttcttcaaggtattgcaccttttgcaacaaatacaatcacaatgttgtttttttttatcaaaagcatg |
20700453 |
T |
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| Q |
255 |
gctatcctaatgtgaacaag |
274 |
Q |
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|| |||||||||||||||| |
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| T |
20700452 |
actttcctaatgtgaacaag |
20700433 |
T |
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