View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11433_high_25 (Length: 279)

Name: NF11433_high_25
Description: NF11433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11433_high_25
NF11433_high_25
[»] chr3 (8 HSPs)
chr3 (19-279)||(33609214-33609474)
chr3 (34-279)||(33618389-33618634)
chr3 (38-104)||(33627779-33627845)
chr3 (188-279)||(33588498-33588589)
chr3 (188-279)||(33595670-33595761)
chr3 (188-279)||(33602801-33602892)
chr3 (38-104)||(33622758-33622824)
chr3 (200-264)||(33627619-33627683)


Alignment Details
Target: chr3 (Bit Score: 253; Significance: 1e-141; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 19 - 279
Target Start/End: Complemental strand, 33609474 - 33609214
Alignment:
Q  19 aagttaggttgttaattcgcttaccaagcagacaaacatcataatacccccagttatgaacaggaatcttcgaccaaatcgatcaacaataccggcagat 118  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  33609474 aagttaggttgttatttcgcttaccaagcagacaaacatcataatacccccagttatgaacaggaatcttcgaccaaatcgatcaacaataccggcagag 33609375  T
Q  119 ataacgttagacacaaggctaacggatccaagtacaatggcggaaattaaagcgccgtcacgtcccaagcccacagaatggaagaggttaggtgaataga 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33609374 ataacgttagacacaaggctaacggatccaagtacaatggcggaaattaaagcgccgtcacgtcccaagcccacagaatggaagaggttaggtgaataga 33609275  T
Q  219 aagcgacgatgttgatcccggtaagttgttggaaaaatgggattgcaaatgccatcaccaa 279  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33609274 aagcgacgatgttgatcccggtaagttgttggaaaaatgggattgcaaatgccatcaccaa 33609214  T

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Target: chr3; HSP #2
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 34 - 279
Target Start/End: Complemental strand, 33618634 - 33618389
Alignment:
Q  34 ttcgcttaccaagcagacaaacatcataatacccccagttatgaacaggaatcttcgaccaaatcgatcaacaataccggcagatataacgttagacaca 133  Q
    |||||||||||||||||||| ||||||||| ||||||| |||||||| |||||||||||||| ||||||||||||||| ||||| |||| |||||||| |    
T  33618634 ttcgcttaccaagcagacaagcatcataattcccccagatatgaacaagaatcttcgaccaattcgatcaacaataccagcagagataaggttagacaaa 33618535  T
Q  134 aggctaacggatccaagtacaatggcggaaattaaagcgccgtcacgtcccaagcccacagaatggaagaggttaggtgaatagaaagcgacgatgttga 233  Q
    |||||||| |||||||||| ||||||||||| |||||| |||||  |||| || |||||||| || |||||||| |||||||| || || || || ||||    
T  33618534 aggctaacagatccaagtataatggcggaaagtaaagctccgtcgtgtccaaaacccacagagtgaaagaggttgggtgaataaaaggctacaatattga 33618435  T
Q  234 tcccggtaagttgttggaaaaatgggattgcaaatgccatcaccaa 279  Q
    |||| ||||| ||||||||||| |||||||||||||||||||||||    
T  33618434 tccctgtaagctgttggaaaaacgggattgcaaatgccatcaccaa 33618389  T

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Target: chr3; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 38 - 104
Target Start/End: Complemental strand, 33627845 - 33627779
Alignment:
Q  38 cttaccaagcagacaaacatcataatacccccagttatgaacaggaatcttcgaccaaatcgatcaa 104  Q
    |||||||||||||||||||| |||||||||||||| ||||||| |||||||||||||||||||||||    
T  33627845 cttaccaagcagacaaacatgataatacccccagtaatgaacaagaatcttcgaccaaatcgatcaa 33627779  T

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Target: chr3; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 188 - 279
Target Start/End: Complemental strand, 33588589 - 33588498
Alignment:
Q  188 cccacagaatggaagaggttaggtgaatagaaagcgacgatgttgatcccggtaagttgttggaaaaatgggattgcaaatgccatcaccaa 279  Q
    |||||||| || |||||||| ||||||||||||||||| ||||||||||| ||||  ||||| ||||||||||||| ||||||||| |||||    
T  33588589 cccacagattgaaagaggtttggtgaatagaaagcgacaatgttgatccctgtaaactgttgaaaaaatgggattgaaaatgccatgaccaa 33588498  T

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Target: chr3; HSP #5
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 188 - 279
Target Start/End: Complemental strand, 33595761 - 33595670
Alignment:
Q  188 cccacagaatggaagaggttaggtgaatagaaagcgacgatgttgatcccggtaagttgttggaaaaatgggattgcaaatgccatcaccaa 279  Q
    |||||||| || |||||||| ||||||||||||||||| ||||||||||| ||||  ||||| ||||||||||||| ||||||||| |||||    
T  33595761 cccacagattgaaagaggtttggtgaatagaaagcgacaatgttgatccctgtaaactgttgaaaaaatgggattgaaaatgccatgaccaa 33595670  T

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Target: chr3; HSP #6
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 188 - 279
Target Start/End: Complemental strand, 33602892 - 33602801
Alignment:
Q  188 cccacagaatggaagaggttaggtgaatagaaagcgacgatgttgatcccggtaagttgttggaaaaatgggattgcaaatgccatcaccaa 279  Q
    |||||||| || |||||||| ||||||||||||||||| ||||||||||| ||||  ||||| ||||||||||||| ||||||||| |||||    
T  33602892 cccacagattgaaagaggtttggtgaatagaaagcgacaatgttgatccctgtaaactgttgaaaaaatgggattgaaaatgccatgaccaa 33602801  T

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Target: chr3; HSP #7
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 38 - 104
Target Start/End: Complemental strand, 33622824 - 33622758
Alignment:
Q  38 cttaccaagcagacaaacatcataatacccccagttatgaacaggaatcttcgaccaaatcgatcaa 104  Q
    ||||| ||||||||||||||||||| |||||| |||||||||| ||||||||||||||||| |||||    
T  33622824 cttacaaagcagacaaacatcataacacccccggttatgaacaagaatcttcgaccaaatctatcaa 33622758  T

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Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 200 - 264
Target Start/End: Complemental strand, 33627683 - 33627619
Alignment:
Q  200 aagaggttaggtgaatagaaagcgacgatgttgatcccggtaagttgttggaaaaatgggattgc 264  Q
    ||||||||||||||||||||||| |  ||||||||||| |||| |||||| ||||| ||||||||    
T  33627683 aagaggttaggtgaatagaaagcaataatgttgatccctgtaacttgttgaaaaaacgggattgc 33627619  T

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