View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11433_high_27 (Length: 267)
Name: NF11433_high_27
Description: NF11433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11433_high_27 |
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Alignment Details
Target: chr3 (Bit Score: 192; Significance: 1e-104; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 18 - 257
Target Start/End: Complemental strand, 22743180 - 22742941
Alignment:
| Q |
18 |
gaaaggaatgaagttgtatgcttaaggtcacgattagcgagtgtgactagttaatgtacgtaaattaaaattgaaatactcactaggatcagcaattgaa |
117 |
Q |
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| T |
22743180 |
gaaaggaatgaagtggtatgcttaatgtcacgatgagcgtgtgtgactagtttgtgtatgtaaattgaaattgttatactcactaggatcagcaattgaa |
22743081 |
T |
|
| Q |
118 |
cttggaaaagataccaagaaaaccaagtagaatgcaaatagtgtagaggataaaagatccaatctgaaactcagccattccgctacactagcagtgtata |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
22743080 |
cttggaaaagataccaagaaaaccaagtagaatgcaaatagtgtagaggataaaagatccaatctgaaactcagccattccactacactagcagtgtata |
22742981 |
T |
|
| Q |
218 |
atttaggttgcgaatatttgtctatcaattgcatattcat |
257 |
Q |
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| T |
22742980 |
atttaggttgtgaatatttgtctatcaattgcatattcat |
22742941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 53 - 257
Target Start/End: Original strand, 22668121 - 22668325
Alignment:
| Q |
53 |
agcgagtgtgactagttaatgtacgtaaattaaaattgaaatactcactaggatcagcaattgaacttggaaaagataccaagaaaaccaagtagaatgc |
152 |
Q |
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||||||| ||||||||||||| | |||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| |||| || |
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| T |
22668121 |
agcgagtatgactagttaatgcatgtaaattaaacttgaaatactcactaggatcagctattgaacttggaaaagatactaagaaaaccaagcagaaagc |
22668220 |
T |
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| Q |
153 |
aaatagtgtagaggataaaagatccaatctgaaactcagccattccgctacactagcagtgtataatttaggttgcgaatatttgtctatcaattgcata |
252 |
Q |
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| T |
22668221 |
aaatactattgaggataaaaggtccagtctgaatttcagccattccattgcactggcactgtataatttaggttgcgaatatttgtctatcaactgcata |
22668320 |
T |
|
| Q |
253 |
ttcat |
257 |
Q |
| |
|
||||| |
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| T |
22668321 |
ttcat |
22668325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 53 - 257
Target Start/End: Original strand, 22724760 - 22724964
Alignment:
| Q |
53 |
agcgagtgtgactagttaatgtacgtaaattaaaattgaaatactcactaggatcagcaattgaacttggaaaagataccaagaaaaccaagtagaatgc |
152 |
Q |
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||||||| ||||||||||||| | |||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| |||| || |
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| T |
22724760 |
agcgagtatgactagttaatgcatgtaaattaaacttgaaatactcactaggatcagctattgaacttggaaaagatactaagaaaaccaagcagaaagc |
22724859 |
T |
|
| Q |
153 |
aaatagtgtagaggataaaagatccaatctgaaactcagccattccgctacactagcagtgtataatttaggttgcgaatatttgtctatcaattgcata |
252 |
Q |
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||||| | | ||||||||||| |||| |||||| ||||||||||| | |||| ||| |||||||||||||||||||||||||||||||||| |||||| |
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| T |
22724860 |
aaatactattgaggataaaaggtccagtctgaatttcagccattccattgcactggcactgtataatttaggttgcgaatatttgtctatcaactgcata |
22724959 |
T |
|
| Q |
253 |
ttcat |
257 |
Q |
| |
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||||| |
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|
| T |
22724960 |
ttcat |
22724964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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