View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11433_high_3 (Length: 717)

Name: NF11433_high_3
Description: NF11433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11433_high_3
NF11433_high_3
[»] chr1 (30 HSPs)
chr1 (19-703)||(9298407-9299090)
chr1 (558-683)||(424304-424430)
chr1 (558-684)||(33487042-33487169)
chr1 (558-684)||(12871603-12871730)
chr1 (489-628)||(32878621-32878761)
chr1 (558-681)||(3232770-3232894)
chr1 (558-683)||(14265266-14265392)
chr1 (494-683)||(29205203-29205393)
chr1 (558-683)||(32784090-32784216)
chr1 (561-683)||(27534684-27534807)
chr1 (508-683)||(33125818-33125994)
chr1 (558-683)||(7995573-7995699)
chr1 (603-681)||(28399336-28399414)
chr1 (558-681)||(28678145-28678269)
chr1 (559-683)||(42490876-42491001)
chr1 (594-683)||(44517167-44517255)
chr1 (591-683)||(4882372-4882463)
chr1 (591-683)||(10627017-10627108)
chr1 (562-684)||(45193638-45193761)
chr1 (558-683)||(20411555-20411681)
chr1 (621-684)||(45425484-45425547)
chr1 (558-678)||(18343596-18343717)
chr1 (558-683)||(42276339-42276463)
chr1 (603-684)||(45750507-45750587)
chr1 (603-683)||(29726609-29726688)
chr1 (603-683)||(37822358-37822437)
chr1 (643-683)||(50107927-50107967)
chr1 (649-683)||(15391265-15391299)
chr1 (597-683)||(51418037-51418121)
chr1 (619-676)||(34899025-34899082)
[»] chr7 (35 HSPs)
chr7 (495-683)||(21954831-21955020)
chr7 (533-683)||(39707248-39707398)
chr7 (558-683)||(28664925-28665051)
chr7 (558-683)||(9785299-9785425)
chr7 (560-683)||(45482048-45482172)
chr7 (494-684)||(10574299-10574490)
chr7 (561-683)||(36579325-36579448)
chr7 (558-683)||(22747521-22747646)
chr7 (558-683)||(45457569-45457695)
chr7 (557-683)||(32740733-32740861)
chr7 (558-683)||(5684347-5684473)
chr7 (558-683)||(5709397-5709523)
chr7 (561-683)||(17509217-17509339)
chr7 (561-683)||(17543875-17543997)
chr7 (594-684)||(10094461-10094550)
chr7 (561-683)||(11833003-11833127)
chr7 (594-683)||(14657834-14657924)
chr7 (558-683)||(21603445-21603570)
chr7 (559-683)||(42603782-42603907)
chr7 (534-674)||(29352205-29352345)
chr7 (557-684)||(39532987-39533115)
chr7 (558-683)||(27535438-27535566)
chr7 (558-683)||(41287939-41288066)
chr7 (558-683)||(1281150-1281276)
chr7 (558-683)||(17473736-17473862)
chr7 (558-683)||(17579352-17579478)
chr7 (558-684)||(48304405-48304534)
chr7 (558-683)||(3266364-3266496)
chr7 (603-679)||(15674629-15674704)
chr7 (603-681)||(21990691-21990768)
chr7 (596-683)||(24320236-24320322)
chr7 (594-684)||(2622612-2622701)
chr7 (649-683)||(36719565-36719599)
chr7 (603-677)||(42644705-42644778)
chr7 (560-675)||(4028168-4028281)
[»] chr4 (35 HSPs)
chr4 (533-683)||(12717130-12717280)
chr4 (489-683)||(22049417-22049611)
chr4 (494-683)||(22757015-22757202)
chr4 (591-683)||(6881973-6882064)
chr4 (558-684)||(7060306-7060433)
chr4 (554-683)||(20399916-20400046)
chr4 (558-683)||(27394812-27394938)
chr4 (558-683)||(29268790-29268916)
chr4 (558-683)||(44757055-44757181)
chr4 (561-683)||(13965545-13965668)
chr4 (558-684)||(24825631-24825758)
chr4 (592-683)||(50801235-50801325)
chr4 (559-683)||(5814330-5814455)
chr4 (533-668)||(3159000-3159136)
chr4 (558-683)||(6911662-6911788)
chr4 (558-683)||(43244394-43244520)
chr4 (558-678)||(478030-478150)
chr4 (558-681)||(24568728-24568852)
chr4 (591-683)||(43493300-43493391)
chr4 (558-683)||(394287-394413)
chr4 (558-683)||(7861219-7861344)
chr4 (558-683)||(30202020-30202146)
chr4 (500-683)||(25658091-25658275)
chr4 (558-683)||(24100121-24100249)
chr4 (558-684)||(26742475-26742602)
chr4 (563-683)||(7083829-7083950)
chr4 (558-683)||(42197535-42197662)
chr4 (558-636)||(31521964-31522044)
chr4 (558-679)||(51152107-51152228)
chr4 (558-683)||(11210326-11210452)
chr4 (604-679)||(26674402-26674476)
chr4 (605-667)||(27090755-27090817)
chr4 (649-683)||(36124362-36124396)
chr4 (649-683)||(38944161-38944195)
chr4 (558-684)||(39837576-39837704)
[»] chr2 (33 HSPs)
chr2 (533-681)||(17767566-17767715)
chr2 (558-683)||(27095687-27095813)
chr2 (558-684)||(44942267-44942394)
chr2 (558-683)||(20561145-20561271)
chr2 (558-683)||(22597117-22597243)
chr2 (558-683)||(43474141-43474267)
chr2 (558-683)||(5754270-5754396)
chr2 (558-683)||(33012059-33012185)
chr2 (559-683)||(25067835-25067960)
chr2 (560-675)||(11798537-11798653)
chr2 (558-683)||(12704669-12704795)
chr2 (558-679)||(15919856-15919977)
chr2 (603-681)||(6431402-6431480)
chr2 (593-679)||(13740677-13740762)
chr2 (558-683)||(11937871-11937998)
chr2 (558-683)||(38535318-38535444)
chr2 (621-683)||(11581141-11581203)
chr2 (591-685)||(34416772-34416865)
chr2 (603-681)||(35333534-35333611)
chr2 (591-683)||(4739346-4739437)
chr2 (554-683)||(4604320-4604450)
chr2 (558-683)||(9978682-9978808)
chr2 (594-683)||(4426671-4426759)
chr2 (561-684)||(31908828-31908952)
chr2 (594-683)||(32314462-32314550)
chr2 (558-636)||(17268183-17268263)
chr2 (649-684)||(10287018-10287053)
chr2 (649-684)||(41797668-41797703)
chr2 (641-679)||(17792540-17792578)
chr2 (558-683)||(18089409-18089531)
chr2 (650-683)||(12891132-12891165)
chr2 (606-675)||(13879027-13879095)
chr2 (606-675)||(14019152-14019220)
[»] scaffold0312 (1 HSPs)
scaffold0312 (558-683)||(6119-6245)
[»] chr3 (34 HSPs)
chr3 (535-683)||(106056-106206)
chr3 (558-683)||(36691820-36691946)
chr3 (558-683)||(31270308-31270434)
chr3 (558-683)||(11819065-11819191)
chr3 (558-682)||(13701994-13702119)
chr3 (558-681)||(53155453-53155577)
chr3 (604-683)||(2147756-2147835)
chr3 (558-683)||(3456925-3457051)
chr3 (558-683)||(48652461-48652587)
chr3 (495-683)||(32080775-32080965)
chr3 (603-683)||(35174733-35174812)
chr3 (594-682)||(54239040-54239127)
chr3 (558-683)||(31462767-31462893)
chr3 (558-683)||(34960879-34961005)
chr3 (558-683)||(36624715-36624841)
chr3 (558-683)||(48400881-48401007)
chr3 (644-684)||(24520706-24520746)
chr3 (603-683)||(41868315-41868394)
chr3 (621-681)||(47733900-47733960)
chr3 (603-683)||(49628108-49628187)
chr3 (558-683)||(14585444-14585570)
chr3 (603-684)||(22484994-22485074)
chr3 (558-683)||(38527245-38527371)
chr3 (559-683)||(40013293-40013421)
chr3 (621-683)||(4219226-4219288)
chr3 (649-683)||(33637477-33637511)
chr3 (603-681)||(40883891-40883968)
chr3 (619-684)||(40401521-40401586)
chr3 (591-683)||(55090604-55090695)
chr3 (606-684)||(39610244-39610321)
chr3 (553-595)||(43839601-43839643)
chr3 (558-683)||(4206532-4206658)
chr3 (642-683)||(5327497-5327538)
chr3 (649-682)||(34103739-34103772)
[»] chr8 (29 HSPs)
chr8 (533-683)||(2968486-2968640)
chr8 (559-684)||(14600718-14600844)
chr8 (593-683)||(31308167-31308256)
chr8 (591-681)||(32778973-32779063)
chr8 (502-622)||(13576257-13576378)
chr8 (558-683)||(37612635-37612761)
chr8 (558-683)||(30026901-30027027)
chr8 (557-684)||(10338842-10338970)
chr8 (503-595)||(25939757-25939848)
chr8 (559-683)||(9501572-9501698)
chr8 (530-684)||(7281600-7281757)
chr8 (556-683)||(2234491-2234619)
chr8 (500-683)||(30039358-30039536)
chr8 (603-684)||(39067709-39067789)
chr8 (558-683)||(24791189-24791315)
chr8 (558-683)||(31407769-31407895)
chr8 (558-683)||(41361714-41361840)
chr8 (558-683)||(2025230-2025356)
chr8 (561-683)||(3204777-3204899)
chr8 (558-683)||(11161864-11161990)
chr8 (594-683)||(37128507-37128595)
chr8 (558-683)||(10147928-10148055)
chr8 (558-683)||(12329608-12329735)
chr8 (603-679)||(15288823-15288898)
chr8 (603-679)||(15469192-15469267)
chr8 (597-683)||(4757188-4757273)
chr8 (649-683)||(7579876-7579910)
chr8 (641-683)||(13576208-13576250)
chr8 (594-683)||(23971117-23971203)
[»] scaffold0155 (1 HSPs)
scaffold0155 (559-676)||(35065-35185)
[»] chr6 (11 HSPs)
chr6 (558-683)||(6419871-6419997)
chr6 (561-683)||(14783184-14783307)
chr6 (558-683)||(12481383-12481509)
chr6 (558-683)||(15590092-15590218)
chr6 (558-683)||(21507821-21507947)
chr6 (559-683)||(23654233-23654358)
chr6 (558-683)||(4921894-4922021)
chr6 (558-683)||(2304823-2304949)
chr6 (558-683)||(8693670-8693799)
chr6 (558-683)||(19402821-19402947)
chr6 (605-667)||(2488169-2488231)
[»] chr5 (24 HSPs)
chr5 (558-683)||(17331310-17331436)
chr5 (560-683)||(17699537-17699661)
chr5 (528-681)||(25961878-25962033)
chr5 (558-684)||(29097771-29097898)
chr5 (559-683)||(178119-178244)
chr5 (591-683)||(39179841-39179932)
chr5 (559-681)||(12439649-12439771)
chr5 (558-675)||(43493854-43493972)
chr5 (558-683)||(6281026-6281152)
chr5 (558-683)||(28040611-28040737)
chr5 (558-683)||(33164481-33164607)
chr5 (561-683)||(6635234-6635358)
chr5 (501-683)||(17096252-17096432)
chr5 (558-681)||(32347729-32347854)
chr5 (558-684)||(27241046-27241173)
chr5 (604-683)||(3740387-3740465)
chr5 (594-683)||(17687225-17687313)
chr5 (561-684)||(34431045-34431169)
chr5 (558-678)||(39531422-39531540)
chr5 (558-684)||(20483168-20483295)
chr5 (603-683)||(23882129-23882208)
chr5 (604-683)||(12891706-12891784)
chr5 (561-613)||(11824917-11824970)
chr5 (598-683)||(18653806-18653890)
[»] scaffold1379 (2 HSPs)
scaffold1379 (491-683)||(1099-1292)
scaffold1379 (603-683)||(4-83)
[»] scaffold0294 (1 HSPs)
scaffold0294 (554-684)||(4079-4209)
[»] scaffold0536 (1 HSPs)
scaffold0536 (558-683)||(2882-3010)
[»] scaffold0321 (1 HSPs)
scaffold0321 (591-683)||(7137-7228)
[»] scaffold0056 (1 HSPs)
scaffold0056 (560-684)||(74148-74273)
[»] scaffold0432 (1 HSPs)
scaffold0432 (558-676)||(2438-2555)
[»] scaffold1350 (1 HSPs)
scaffold1350 (641-683)||(1640-1682)
[»] scaffold0001 (1 HSPs)
scaffold0001 (562-683)||(404271-404393)


Alignment Details
Target: chr1 (Bit Score: 574; Significance: 0; HSPs: 30)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 574; E-Value: 0
Query Start/End: Original strand, 19 - 703
Target Start/End: Complemental strand, 9299090 - 9298407
Alignment:
Q  19 gatgaatcactgagacaatttccaaggttcattagaaatagcagcatagcaagttttgttaatatcagtgacatgttgaagggattcttagaactttaaa 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9299090 gatgaatcactgagacaatttccaaggttcattagaaatagcagcatagcaagttttgttaatatcagtgacatgttgaagggattcttagaactttaaa 9298991  T
Q  119 ctggtataatttaatatatagagcaagagagggataaagtagacagaagatgatataaagaaacataattgtatctatctctatgctattaagaatgaaa 218  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  9298990 ctggtataatttaatatatagagcaagagagggataaagtagaaagaagatgatataaagaaacataattgtatctatctctatgctattaaaaatgaaa 9298891  T
Q  219 ataatatgctgcnnnnnnnnnntattgattaagaatcggtcaaagtccaagaatatgatgtgcattgcaagctccctattcaagtacatgataaataatg 318  Q
    ||||||||||||          ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9298890 ataatatgctgcaaaaaaaaa-tatagattaagaatcggtcaaagtccaagaatatgatgtgcattgcaagctccctattcaagtacatgataaataatg 9298792  T
Q  319 ctaagaaacacattgatcttcaagtacatgtttcaacaaaatgtttttgatcgattaaaattcacactgagtcctccaaatttacgagacccacataatc 418  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| | ||| |||||||||||||||| ||||||||||||    
T  9298791 ctaagaaacacattgatctacaagtacatgtttcaacaaaatgtttttgattgattaaaattcatagtgaatcctccaaatttacgatacccacataatc 9298692  T
Q  419 aattcaaaagagttttgaaaaatatgtattaaaaattatgttgccatcacttaattttaatatcaacacctttttctctcgcttctcttcttctcaaacc 518  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9298691 aattcaaaagagttttgaaaaatatgtattaaaaattatgttgccatcatttaattttaatatcaacacctttttctctcgcttctcttcttctcaaacc 9298592  T
Q  519 ttaaccgtcggccatttcttcttattgtctattgaagaagggtgatttagggtcaattttgaaccaaagtcaccctccgagttatttttccttctatcca 618  Q
    ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||     
T  9298591 ttaactgtcggccatttcttcttcttgtctattgaagaagggtgatttagggtcaattttgaaccaaagtcaccctccgagttgtttttccttctatcct 9298492  T
Q  619 aattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtcttgtactctgcttgttttgat 703  Q
    | |||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| | ||||||||||||||||||||||||    
T  9298491 agttaaataattgatttccacgtattttaagttttctttcgtttgtttttgtgatttcattgtcttgtactctgcttgttttgat 9298407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 558 - 683
Target Start/End: Complemental strand, 424430 - 424304
Alignment:
Q  558 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 655  Q
    ||||||||||||||||||||||| |||||  |||||| |||||||| ||||||||||||||| |||| ||||| ||||||| |  ||||||  |||||||    
T  424430 gggtgatttagggtcaattttgacccaaaaatcacccctccgagttgtttttccttctatcctaattgaataagtgatttc-acatattttctgttttct 424332  T
Q  656 ttcgtttatttttgtgatttcgtcgtct 683  Q
    ||||||| ||||||||||||||||||||    
T  424331 ttcgtttgtttttgtgatttcgtcgtct 424304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 558 - 684
Target Start/End: Complemental strand, 33487169 - 33487042
Alignment:
Q  558 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 655  Q
    ||||||||||||||||||||||| |||||  |||||| ||||| || ||||||||||||||| |||| ||||  ||||||| || ||||||| | |||||    
T  33487169 gggtgatttagggtcaattttgacccaaaaatcacccctccgaattgtttttccttctatcctaattgaatatgtgatttc-atatattttatgctttct 33487071  T
Q  656 ttcgtttatttttgtgatttcgtcgtctt 684  Q
    ||||||| |||||||||||||||||||||    
T  33487070 ttcgtttgtttttgtgatttcgtcgtctt 33487042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 558 - 684
Target Start/End: Original strand, 12871603 - 12871730
Alignment:
Q  558 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 655  Q
    ||||||||||||||||||||||| |||||  |||||| |||||||| |||||| || ||||| |||  ||||| ||||||| |  |||||| ||||||||    
T  12871603 gggtgatttagggtcaattttgacccaaaaatcacccctccgagttgtttttcattatatcctaatcgaataagtgatttc-acatattttcagttttct 12871701  T
Q  656 ttcgtttatttttgtgatttcgtcgtctt 684  Q
    ||||||| |||||||||||||||||||||    
T  12871702 ttcgtttgtttttgtgatttcgtcgtctt 12871730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 489 - 628
Target Start/End: Original strand, 32878621 - 32878761
Alignment:
Q  489 tttttctctcgcttctcttcttctcaaaccttaaccgtcggccatttcttcttattgtctattgaagaagggtgatttagggtcaattttgaaccaaagt 588  Q
    |||||||||| | ||||| ||||||||||  ||||||||  || ||||||||| || |||||  |||| |||||||||||||| |||||||| ||||| |    
T  32878621 tttttctctctcctctctccttctcaaactctaaccgtcacccctttcttcttcttatctatcaaagatgggtgatttagggttaattttgacccaaaat 32878720  T
Q  589 ca-ccctccgagttatttttccttctatccaaattaaataa 628  Q
    || || |||||||| ||||||| ||||||| ||||||||||    
T  32878721 catccttccgagttgtttttccctctatcctaattaaataa 32878761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 558 - 681
Target Start/End: Original strand, 3232770 - 3232894
Alignment:
Q  558 gggtgatttagggtcaattttgaac-caaagtca-ccctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 655  Q
    ||||||||||||||||||||||| |  ||| ||| |||||||| || ||||||||||||||| |||| ||||| |||||| ||  ||||||  |||||||    
T  3232770 gggtgatttagggtcaattttgatcaaaaaatcacccctccgaattgtttttccttctatcctaattgaataaatgattt-cacatattttctgttttct 3232868  T
Q  656 ttcgtttatttttgtgatttcgtcgt 681  Q
    ||||||| ||||||||||||||||||    
T  3232869 ttcgtttgtttttgtgatttcgtcgt 3232894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 558 - 683
Target Start/End: Original strand, 14265266 - 14265392
Alignment:
Q  558 gggtgatttagggtcaattttga-accaaagtca-ccctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 655  Q
    ||||||||||||||||||||||| |  ||| ||| ||||||||| | ||||||||||||||| |||||||||| |||||| ||  ||||||  |||||||    
T  14265266 gggtgatttagggtcaattttgacaaaaaaatcacccctccgagctgtttttccttctatcctaattaaataagtgattt-cacatattttctgttttct 14265364  T
Q  656 ttcgtttatttttgtgatttcgtcgtct 683  Q
    | ||| | ||||||||||||||||||||    
T  14265365 tacgtatgtttttgtgatttcgtcgtct 14265392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 494 - 683
Target Start/End: Original strand, 29205203 - 29205393
Alignment:
Q  494 ctctcgcttctcttcttctcaaaccttaaccgtcggccatttcttcttattgtctattgaagaagggtgatttagggtcaattttgaaccaaag-tcacc 592  Q
    ||||| ||||||| ||||||||||| || |||||| || ||||||| | || |   ||  ||| ||||||||||||||||||||||| |||||  |||||    
T  29205203 ctctctcttctctccttctcaaaccctagccgtcgcccttttcttcgtcttcttctttttagacgggtgatttagggtcaattttgacccaaaaatcacc 29205302  T
Q  593 c-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtct 683  Q
    | |  || || ||||||||||||||  |||| ||||| ||||||| || ||||||  ||||||||| |||| ||||||||||||||||||||    
T  29205303 ccttggaattgtttttccttctatcataattgaataagtgatttc-atatattttctgttttcttttgtttgtttttgtgatttcgtcgtct 29205393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 558 - 683
Target Start/End: Original strand, 32784090 - 32784216
Alignment:
Q  558 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 655  Q
    ||||||||||||||||||||||| |||||  |||||| ||||| || |||||||||||||||  ||| ||||| ||||||| |  ||||||  |||||||    
T  32784090 gggtgatttagggtcaattttgacccaaaaatcacccctccgaattgtttttccttctatccttattgaataagtgatttc-acatattttctgttttct 32784188  T
Q  656 ttcgtttatttttgtgatttcgtcgtct 683  Q
    || |||| ||||||||||||||||||||    
T  32784189 tttgtttgtttttgtgatttcgtcgtct 32784216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 561 - 683
Target Start/End: Original strand, 27534684 - 27534807
Alignment:
Q  561 tgatttagggtcaattttgaaccaaag-tca-ccctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctttc 658  Q
    |||||||||||||||||||| |||||  ||| |||||||| || |||||||||||| |  |||| ||||| ||||||| |  ||||||  ||||||||||    
T  27534684 tgatttagggtcaattttgacccaaaaatcatccctccgatttgtttttccttctaccttaattgaataagtgatttc-acatattttctgttttctttc 27534782  T
Q  659 gtttatttttgtgatttcgtcgtct 683  Q
    |||| ||||||||||||||||||||    
T  27534783 gtttgtttttgtgatttcgtcgtct 27534807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 508 - 683
Target Start/End: Complemental strand, 33125994 - 33125818
Alignment:
Q  508 cttctcaaaccttaaccgtcggccatttcttcttattgtctattgaagaagggtgatttagggtcaattttgaaccaaagtcac-cctccgagttatttt 606  Q
    ||||||||||||||  ||||   ||||||||||| |||||||||||| |  |||||||||||||||||||||| ||||| |||| | ||  | || ||||    
T  33125994 cttctcaaaccttagtcgtcactcatttcttctttttgtctattgaaaagaggtgatttagggtcaattttgacccaaaatcactcatctaaattgtttt 33125895  T
Q  607 tccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtct 683  Q
    ||||||| |   |||| ||||| |||||||||  || ||| ||| ||||||  ||| ||||||||||||||| ||||    
T  33125894 tccttcttttataattgaataagtgatttccacataattttagtattcttttctttgtttttgtgatttcgttgtct 33125818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 558 - 683
Target Start/End: Complemental strand, 7995699 - 7995573
Alignment:
Q  558 gggtgatttagggtcaattttgaacc-aaagtcacc-ctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 655  Q
    ||||||||||||||||||||||| || ||| ||||| |||||| || ||||||||||||||| |||| ||||| |||||| ||  ||||||  |||||||    
T  7995699 gggtgatttagggtcaattttgacccaaaaatcacctctccgaattgtttttccttctatcctaattgaataagtgattt-cacatattttctgttttct 7995601  T
Q  656 ttcgtttatttttgtgatttcgtcgtct 683  Q
    | | ||| |||||||||| |||||||||    
T  7995600 tccttttttttttgtgatatcgtcgtct 7995573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 603 - 681
Target Start/End: Complemental strand, 28399414 - 28399336
Alignment:
Q  603 tttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgt 681  Q
    ||||||||| ||||  |||||||||| |||||| ||  |||||| ||||||||||||||| ||||||||||||||||||    
T  28399414 tttttccttatatcataattaaataagtgattttcacatatttttagttttctttcgtttgtttttgtgatttcgtcgt 28399336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 558 - 681
Target Start/End: Complemental strand, 28678269 - 28678145
Alignment:
Q  558 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 655  Q
    ||||||||||||||||||||||| |||||  |||| | ||||| || |||||| |||||||  |||| ||||| ||||||| |  |||||||  ||||||    
T  28678269 gggtgatttagggtcaattttgacccaaaaatcactcgtccgaattgtttttcgttctatcataattgaataagtgatttc-acatattttatattttct 28678171  T
Q  656 ttcgtttatttttgtgatttcgtcgt 681  Q
    ||||||| ||||||||||||||||||    
T  28678170 ttcgtttgtttttgtgatttcgtcgt 28678145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 559 - 683
Target Start/End: Original strand, 42490876 - 42491001
Alignment:
Q  559 ggtgatttagggtcaattttgaac-caaagtca-ccctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctt 656  Q
    |||||||||||||||| ||||| |  ||| ||| |||||||| || |||||| |||||||  |||| ||||| |||||| ||  ||| || |||||||||    
T  42490876 ggtgatttagggtcaagtttgacctaaaaatcacccctccgaattgtttttcgttctatcttaattgaataagtgattt-cacatatcttcagttttctt 42490974  T
Q  657 tcgtttatttttgtgatttcgtcgtct 683  Q
    |||||| ||||||||||||||||||||    
T  42490975 tcgtttgtttttgtgatttcgtcgtct 42491001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 594 - 683
Target Start/End: Original strand, 44517167 - 44517255
Alignment:
Q  594 tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtct 683  Q
    ||||| || ||||||||||||||| |||| ||||| ||||||| |  ||||||  | |||||||||||| ||||||||||||||||||||    
T  44517167 tccgaattgtttttccttctatcctaattcaataagtgatttc-acatattttctgctttctttcgtttgtttttgtgatttcgtcgtct 44517255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 591 - 683
Target Start/End: Complemental strand, 4882463 - 4882372
Alignment:
Q  591 ccctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtct 683  Q
    |||||||| || |||||| || ||||| |||| ||||| ||||||| |  ||||||  |||||||||||||| ||||||||||||||||||||    
T  4882463 ccctccgatttgtttttcattatatcctaattgaataagtgatttc-acatattttctgttttctttcgtttgtttttgtgatttcgtcgtct 4882372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 591 - 683
Target Start/End: Original strand, 10627017 - 10627108
Alignment:
Q  591 ccctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtct 683  Q
    ||||||||||| |||||| || ||||| |||| ||||| | ||||| |  ||||||  |||||||||||||| ||||||||||||||||||||    
T  10627017 ccctccgagttgtttttctttatatcctaattgaataagtaatttc-acatattttctgttttctttcgtttgtttttgtgatttcgtcgtct 10627108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 562 - 684
Target Start/End: Complemental strand, 45193761 - 45193638
Alignment:
Q  562 gatttagggtcaattttgaaccaa-agtcaccctccgagttattttt-ccttctatccaaattaaataattgatttccatgtattttaagttttctttcg 659  Q
    ||||||||||||||||| | |||| | |  ||||||||||| ||||| |||||||||| |||| ||||| ||||||| |  ||||||  |||| ||||||    
T  45193761 gatttagggtcaattttaacccaataatacccctccgagttgttttttccttctatcctaattgaataagtgatttc-acatattttccgtttcctttcg 45193663  T
Q  660 tttatttttgtgatttcgtcgtctt 684  Q
    ||| |||||||||||| ||||||||    
T  45193662 tttgtttttgtgattttgtcgtctt 45193638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 558 - 683
Target Start/End: Original strand, 20411555 - 20411681
Alignment:
Q  558 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 655  Q
    |||||||||| |||||||||||| |||||  |||||| ||||| || |||||| || ||| |||||| ||||| ||||||| |  ||||||  |||||||    
T  20411555 gggtgatttatggtcaattttgacccaaaaatcacccatccgaattgtttttctttttattcaaattgaataagtgatttc-acatattttctgttttct 20411653  T
Q  656 ttcgtttatttttgtgatttcgtcgtct 683  Q
    ||||||| |||||| |||||| ||||||    
T  20411654 ttcgtttgtttttgggatttcatcgtct 20411681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 621 - 684
Target Start/End: Complemental strand, 45425547 - 45425484
Alignment:
Q  621 ttaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtctt 684  Q
    |||||||| |||| |||| ||||||| | ||||||||||||  |||||||||||||||||||||    
T  45425547 ttaaataagtgatatccacgtattttcaattttctttcgttagtttttgtgatttcgtcgtctt 45425484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 558 - 678
Target Start/End: Original strand, 18343596 - 18343717
Alignment:
Q  558 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 655  Q
    |||||||||||| |||||||||| |||||  |||||| | ||| || |||||||||||| |  |||||||| | ||||||| |  ||||||  |||||||    
T  18343596 gggtgatttaggatcaattttgacccaaaaatcaccccttcgatttgtttttccttctaccttaattaaatgagtgatttc-acatattttctgttttct 18343694  T
Q  656 ttcgtttatttttgtgatttcgt 678  Q
    ||||||| |||||||||||||||    
T  18343695 ttcgtttgtttttgtgatttcgt 18343717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 558 - 683
Target Start/End: Original strand, 42276339 - 42276463
Alignment:
Q  558 gggtgatttagggtcaattttgaaccaaagtcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctt 656  Q
    |||||||||||||| | ||||||  |||| |||||| ||||| || ||||| ||||||||  |||||||||| ||||||| |  |||||| |||||||||    
T  42276339 gggtgatttagggttatttttgacacaaaatcacccctccgaattgttttttcttctatcataattaaataactgatttc-acatattttcagttttctt 42276437  T
Q  657 tcgtttatttttgtgatttcgtcgtct 683  Q
    ||||||   ||||||||| ||||||||    
T  42276438 tcgttt-gatttgtgattacgtcgtct 42276463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 603 - 684
Target Start/End: Original strand, 45750507 - 45750587
Alignment:
Q  603 tttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtctt 684  Q
    ||||||||| ||||| |||| ||||| | ||||| |  ||||||  |||||||||||||| |||||||||||||||||||||    
T  45750507 tttttccttttatcctaattgaataagttatttc-acatatttttggttttctttcgtttgtttttgtgatttcgtcgtctt 45750587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 603 - 683
Target Start/End: Complemental strand, 29726688 - 29726609
Alignment:
Q  603 tttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtct 683  Q
    ||||||||| ||||| |||  ||||| ||||||| |  ||||||  |||||||||||||| ||||||||||||||||||||    
T  29726688 tttttccttatatcctaatcgaataagtgatttc-acatattttctgttttctttcgtttgtttttgtgatttcgtcgtct 29726609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 603 - 683
Target Start/End: Complemental strand, 37822437 - 37822358
Alignment:
Q  603 tttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtct 683  Q
    ||||||||||||||| |||| ||||| ||||||| |  ||||||   ||||||||| ||| ||||||||||||||||||||    
T  37822437 tttttccttctatcctaattgaataagtgatttc-acatattttctattttctttcatttgtttttgtgatttcgtcgtct 37822358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 643 - 683
Target Start/End: Complemental strand, 50107967 - 50107927
Alignment:
Q  643 ttttaagttttctttcgtttatttttgtgatttcgtcgtct 683  Q
    |||| ||||||||||||||| ||||||||||||||||||||    
T  50107967 ttttcagttttctttcgtttgtttttgtgatttcgtcgtct 50107927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 649 - 683
Target Start/End: Complemental strand, 15391299 - 15391265
Alignment:
Q  649 gttttctttcgtttatttttgtgatttcgtcgtct 683  Q
    |||||||||||||| ||||||||||||||||||||    
T  15391299 gttttctttcgtttgtttttgtgatttcgtcgtct 15391265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 597 - 683
Target Start/End: Original strand, 51418037 - 51418121
Alignment:
Q  597 gagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtct 683  Q
    ||||| ||||||||||||||| |||| || || ||||||| |  ||||||  |||||||||||||| ||||||| ||||||||||||    
T  51418037 gagttgtttttccttctatcctaattgaa-aagtgatttc-acatattttctgttttctttcgtttgtttttgtaatttcgtcgtct 51418121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 619 - 676
Target Start/End: Original strand, 34899025 - 34899082
Alignment:
Q  619 aattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttc 676  Q
    |||||||||| |||||||| | |||||| ||||||||||||| |  ||||||||||||    
T  34899025 aattaaataagtgatttccgtatattttcagttttctttcgtatgattttgtgatttc 34899082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 78; Significance: 6e-36; HSPs: 35)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 495 - 683
Target Start/End: Complemental strand, 21955020 - 21954831
Alignment:
Q  495 tctcgcttctcttcttctcaaaccttaaccgtcggccatttcttcttattgtctattgaagaagggtgatttagggtcaattttgaaccaaagtcaccc- 593  Q
    |||| ||||||| ||||||||||| ||  |||||| | ||||||||| ||||| |   |||||||||||||||||||||||||| | ||||| |||| |     
T  21955020 tctctcttctctccttctcaaaccctagtcgtcggtcctttcttcttcttgtccaccaaagaagggtgatttagggtcaattttaacccaaaatcactca 21954921  T
Q  594 tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtct 683  Q
    |||||||| |||||| |||||||| |||||||||| |||||||||  |||| | ||||||||||||| | ||||||||||||||||||||    
T  21954920 tccgagttgtttttcattctatcctaattaaataaatgatttccacatattgtcagttttctttcgtctgtttttgtgatttcgtcgtct 21954831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 533 - 683
Target Start/End: Original strand, 39707248 - 39707398
Alignment:
Q  533 tttcttcttattgtctattgaagaagggtgatttagggtcaattttgaaccaaagtcacc-ctccgagttatttttccttctatccaaattaaataattg 631  Q
    |||||||||||||||||   || ||||||||||||||||||||||||| ||||| ||| | ||||||||| |||||| |||||||| |||||||||| |     
T  39707248 tttcttcttattgtctacc-aataagggtgatttagggtcaattttgacccaaaatcatcactccgagttgtttttctttctatcctaattaaataagtt 39707346  T
Q  632 atttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtct 683  Q
    ||||||||||||||| | ||||| ||||||| ||||||||||||||||||||    
T  39707347 atttccatgtattttcacttttcattcgtttgtttttgtgatttcgtcgtct 39707398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 558 - 683
Target Start/End: Complemental strand, 28665051 - 28664925
Alignment:
Q  558 gggtgatttagggtcaattttgaacc-aaagtcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 655  Q
    ||||||||||||||||||||||| || ||| |||||| |||||||| ||||||||||||||| |||| ||||| |||||| ||  ||||||  |||||||    
T  28665051 gggtgatttagggtcaattttgaccctaaaatcacccctccgagttgtttttccttctatcctaattgaataagtgattt-cacatattttctgttttct 28664953  T
Q  656 ttcgtttatttttgtgatttcgtcgtct 683  Q
    ||||||| |||||||||||| |||||||    
T  28664952 ttcgtttgtttttgtgattttgtcgtct 28664925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 558 - 683
Target Start/End: Original strand, 9785299 - 9785425
Alignment:
Q  558 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 655  Q
    ||||||||||||||||||||||| |||||  |||||| | ||| || ||||||||||||||  |||| ||||| ||||||| |  ||||||  |||||||    
T  9785299 gggtgatttagggtcaattttgacccaaaaatcaccccttcgaattgtttttccttctatcttaattgaataagtgatttc-acatattttttgttttct 9785397  T
Q  656 ttcgtttatttttgtgatttcgtcgtct 683  Q
    || |||||||||||||||||||||||||    
T  9785398 tttgtttatttttgtgatttcgtcgtct 9785425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 560 - 683
Target Start/End: Original strand, 45482048 - 45482172
Alignment:
Q  560 gtgatttagggtcaattttgaacc-aaagtcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttcttt 657  Q
    ||||||||||||||||||||| || ||| |||||| |||||| | ||||||||||||||| |||||||||| |||||| ||  ||||||| |  || |||    
T  45482048 gtgatttagggtcaattttgaccccaaaatcacccctccgagctgtttttccttctatcctaattaaataagtgattt-cacatattttatgcgttgttt 45482146  T
Q  658 cgtttatttttgtgatttcgtcgtct 683  Q
    ||||| ||||| ||||||||||||||    
T  45482147 cgtttgtttttatgatttcgtcgtct 45482172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 494 - 684
Target Start/End: Original strand, 10574299 - 10574490
Alignment:
Q  494 ctctcgcttctcttcttctcaaaccttaaccgtcggccatttcttcttattgtctattgaagaagggtgatttagggtcaattttgaaccaaag-tcacc 592  Q
    ||||| ||||||| ||||||||||| || |||||  || ||||||||| || |   ||  ||| |||||||||||||||||||||||  ||||  |||||    
T  10574299 ctctctcttctctccttctcaaaccctatccgtcacccctttcttctttttcttctttttagatgggtgatttagggtcaattttgactcaaaaatcacc 10574398  T
Q  593 c-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtctt 684  Q
    | ||||| || ||||||||| ||||| |||| |||||  |||||  |  ||||||  |||||||||||||| |||||||||||||||||||||    
T  10574399 cctccgaattgtttttccttttatcctaattgaataaacgatttt-acatattttctgttttctttcgtttgtttttgtgatttcgtcgtctt 10574490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 561 - 683
Target Start/End: Complemental strand, 36579448 - 36579325
Alignment:
Q  561 tgatttagggtcaattttgaacc-aaagtcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctttc 658  Q
    |||||||||||||||||||| || ||| |||||| ||||| || ||||||||||||||| | || ||||| ||||| |||  ||||||  |||||||||     
T  36579448 tgatttagggtcaattttgacccgaaaatcacccctccgaattgtttttccttctatcctagttgaataagtgatt-ccacatattttttgttttctttt 36579350  T
Q  659 gtttatttttgtgatttcgtcgtct 683  Q
    |||| ||||||||||||||||||||    
T  36579349 gtttgtttttgtgatttcgtcgtct 36579325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 558 - 683
Target Start/End: Complemental strand, 22747646 - 22747521
Alignment:
Q  558 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 655  Q
    ||||||||||||||||||||||| |||||  |||||| ||| |||| |||| |||||||||| |||| ||||| ||||||  |  ||||||| |||||||    
T  22747646 gggtgatttagggtcaattttgacccaaaaatcacccctccaagttgtttt-ccttctatcctaattgaataagtgatttg-acatattttatgttttct 22747549  T
Q  656 ttcgtttatttttgtgatttcgtcgtct 683  Q
    ||| |||||||||||||||||| |||||    
T  22747548 ttcatttatttttgtgatttcgccgtct 22747521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 558 - 683
Target Start/End: Complemental strand, 45457695 - 45457569
Alignment:
Q  558 gggtgatttagggtcaattttgaaccaaag-tcac-cctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 655  Q
    |||||||||||||||||||||||  ||||  |||| ||||||| || ||||||||||||||  |||| ||||| ||||||| |  ||||||| |||||||    
T  45457695 gggtgatttagggtcaattttgacgcaaaaatcactcctccgaattgtttttccttctatcttaattgaataagtgatttc-acatattttatgttttct 45457597  T
Q  656 ttcgtttatttttgtgatttcgtcgtct 683  Q
    ||||||| |||| |||||||| ||||||    
T  45457596 ttcgtttgttttcgtgatttcatcgtct 45457569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 557 - 683
Target Start/End: Original strand, 32740733 - 32740861
Alignment:
Q  557 agggtgatttagggtcaattttgaaccaaag--tcaccctc-cgagttatttttccttctatccaaattaaataattgatttccatgtattttaagtttt 653  Q
    |||||||||||| ||||||||||| | |||   |||||| | ||| || ||||||||||||||| |||| ||||| ||||||| |  ||||||  |||||    
T  32740733 agggtgatttagagtcaattttgaccaaaaaaatcaccccctcgaattgtttttccttctatcctaattgaataagtgatttc-acatattttttgtttt 32740831  T
Q  654 ctttcgtttatttttgtgatttcgtcgtct 683  Q
    |||||||| |||||||||||||||||||||    
T  32740832 ctttcgttgatttttgtgatttcgtcgtct 32740861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 558 - 683
Target Start/End: Original strand, 5684347 - 5684473
Alignment:
Q  558 gggtgatttagggtcaattttga-accaaagtcacc-ctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 655  Q
    |||||||||||||||||||||||  | ||| ||||| |||||| || |||||| |||||||| |||| ||||| |||||| ||  ||||||  |||||||    
T  5684347 gggtgatttagggtcaattttgacgcaaaaatcacctctccgaattgtttttcattctatcctaattgaataagtgattt-cacatattttctgttttct 5684445  T
Q  656 ttcgtttatttttgtgatttcgtcgtct 683  Q
    |||||||  |||||||||||||| ||||    
T  5684446 ttcgtttgcttttgtgatttcgttgtct 5684473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 558 - 683
Target Start/End: Original strand, 5709397 - 5709523
Alignment:
Q  558 gggtgatttagggtcaattttga-accaaagtcacc-ctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 655  Q
    |||||||||||||||||||||||  | ||| ||||| |||||| || |||||| |||||||| |||| ||||| |||||| ||  ||||||  |||||||    
T  5709397 gggtgatttagggtcaattttgacgcaaaaatcacctctccgaattgtttttcattctatcctaattgaataagtgattt-cacatattttctgttttct 5709495  T
Q  656 ttcgtttatttttgtgatttcgtcgtct 683  Q
    |||||||  |||||||||||||| ||||    
T  5709496 ttcgtttgcttttgtgatttcgttgtct 5709523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 561 - 683
Target Start/End: Complemental strand, 17509339 - 17509217
Alignment:
Q  561 tgatttagggtcaattttgaaccaaag-tcaccctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcg 659  Q
    |||||||||||||||||||| | |||  ||||||||||| |||||||||||| ||||| |||| ||||| |||||| ||  ||||||  |||| ||||      
T  17509339 tgatttagggtcaattttgaccaaaaaatcaccctccgaattatttttccttttatcctaattgaataagtgattt-cacatattttctgtttcctttaa 17509241  T
Q  660 tttatttttgtgatttcgtcgtct 683  Q
    ||| |||||||||||| |||||||    
T  17509240 tttgtttttgtgattttgtcgtct 17509217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 561 - 683
Target Start/End: Original strand, 17543875 - 17543997
Alignment:
Q  561 tgatttagggtcaattttgaaccaaag-tcaccctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcg 659  Q
    |||||||||||||||||||| | |||  ||||||||||| |||||||||||| ||||| |||| ||||| |||||| ||  ||||||  |||| ||||      
T  17543875 tgatttagggtcaattttgaccaaaaaatcaccctccgaattatttttccttttatcctaattgaataagtgattt-cacatattttctgtttcctttaa 17543973  T
Q  660 tttatttttgtgatttcgtcgtct 683  Q
    ||| |||||||||||| |||||||    
T  17543974 tttgtttttgtgattttgtcgtct 17543997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 594 - 684
Target Start/End: Original strand, 10094461 - 10094550
Alignment:
Q  594 tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtctt 684  Q
    ||||| || ||||||||| ||||| |||| ||||| ||||||| |  ||||||  |||||||||||||| |||||||||||||||||||||    
T  10094461 tccgaattgtttttccttttatcctaattgaataagtgatttc-acatattttctgttttctttcgtttgtttttgtgatttcgtcgtctt 10094550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 561 - 683
Target Start/End: Original strand, 11833003 - 11833127
Alignment:
Q  561 tgatttagggtcaattttgaaccaaag-tcaccc--tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttcttt 657  Q
    ||||||| |||||||||||| |||||  ||||||  ||||| || ||||||||||| ||| |||| ||||| ||||||| |  ||||||  || ||||||    
T  11833003 tgatttatggtcaattttgacccaaaaatcaccccctccgaattgtttttccttctttcctaattgaataagtgatttc-acatattttctgtattcttt 11833101  T
Q  658 cgtttatttttgtgatttcgtcgtct 683  Q
    ||||| ||||||||||||||||||||    
T  11833102 cgtttgtttttgtgatttcgtcgtct 11833127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 594 - 683
Target Start/End: Complemental strand, 14657924 - 14657834
Alignment:
Q  594 tccgagttatttttccttctatccaaattaaataattgatttc-catgtattttaagttttctttcgtttatttttgtgatttcgtcgtct 683  Q
    |||||| | ||||||||||||||  |||| ||||| | ||||| ||| |||||| |||||||||| |||| ||||||||||||||||||||    
T  14657924 tccgagctgtttttccttctatcttaattgaataagttatttcacatatattttcagttttcttttgtttgtttttgtgatttcgtcgtct 14657834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 558 - 683
Target Start/End: Original strand, 21603445 - 21603570
Alignment:
Q  558 gggtgatttagggtcaattttgaaccaaagtcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctt 656  Q
    ||||||||||||||||||||||| | |||  ||||| || || || ||||||||||||||| |||| ||||| ||||||| |  |||| |  ||||||||    
T  21603445 gggtgatttagggtcaattttgaccaaaaagcacccctctgaattgtttttccttctatcctaattgaataagtgatttc-acatattctctgttttctt 21603543  T
Q  657 tcgtttatttttgtgatttcgtcgtct 683  Q
    || ||| |||||||||||| |||||||    
T  21603544 tcctttgtttttgtgattttgtcgtct 21603570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 559 - 683
Target Start/End: Complemental strand, 42603907 - 42603782
Alignment:
Q  559 ggtgatttagggtcaattttga-accaaagtca-ccctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctt 656  Q
    ||||||||| ||||||||||||  | ||| ||| |||||||| || |||||| |||||||  |||| ||||| |||||| ||  ||||||  ||||||||    
T  42603907 ggtgatttatggtcaattttgactcaaaaatcacccctccgaattgtttttcattctatcataattgaataagtgattt-cacatattttctgttttctt 42603809  T
Q  657 tcgtttatttttgtgatttcgtcgtct 683  Q
    |||||| ||||||||||||||||||||    
T  42603808 tcgtttgtttttgtgatttcgtcgtct 42603782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 534 - 674
Target Start/End: Original strand, 29352205 - 29352345
Alignment:
Q  534 ttcttcttattgtctattgaagaagggtgatttagggtcaattttgaaccaaagtca-ccctccgagttatttttccttctatccaaattaaataattga 632  Q
    |||||||| ||||| || ||||| |||||||||| | | ||||||||   | | ||| |||||||||||||||||  || ||||| |||||||||| |||    
T  29352205 ttcttcttcttgtcaatcgaagatgggtgatttatgattaattttgacttagaatcatccctccgagttattttta-ttatatcctaattaaataagtga 29352303  T
Q  633 tttccatgtattttaagttttctttcgtttatttttgtgatt 674  Q
    ||||||  |||| | ||||||||||||||| |||| ||||||    
T  29352304 tttccacatattctcagttttctttcgtttgttttcgtgatt 29352345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 557 - 684
Target Start/End: Complemental strand, 39533115 - 39532987
Alignment:
Q  557 agggtgatttagggtcaattttgaaccaaag-tcacc-ctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttc 654  Q
    |||||||||||||||||||||||| |||||  ||| | ||| || || ||||||||||||||  |||| ||||| ||||||| |  ||||||  ||||||    
T  39533115 agggtgatttagggtcaattttgacccaaaaatcatctctctgaattgtttttccttctatcttaattgaataagtgatttc-acatattttctgttttc 39533017  T
Q  655 tttcgtttatttttgtgatttcgtcgtctt 684  Q
    ||| |||| |||| ||||||||||||||||    
T  39533016 ttttgtttgttttcgtgatttcgtcgtctt 39532987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 558 - 683
Target Start/End: Original strand, 27535438 - 27535566
Alignment:
Q  558 gggtgatttagggtcaattttgaacc-aaagtcaccc-tccgagttatttttccttctatccaaattaaataattgatttc-catgtattttaagttttc 654  Q
    ||||||||||||||||||||| | || ||| |||||| ||||| || ||||||||||||| | ||||  |||| ||||||| ||| ||||||  |||||     
T  27535438 gggtgatttagggtcaatttttatccaaaaatcacccatccgaattgtttttccttctattctaattgtataagtgatttcacatatattttctgtttta 27535537  T
Q  655 tttcgtttatttttgtgatttcgtcgtct 683  Q
    |||| ||| |||||||||||| |||||||    
T  27535538 tttcatttgtttttgtgattttgtcgtct 27535566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 558 - 683
Target Start/End: Original strand, 41287939 - 41288066
Alignment:
Q  558 gggtgatttagggtcaattttgaaccaa-agtcaccc-tccgagtta-tttttccttctatccaaattaaataattgatttccatgtattttaagttttc 654  Q
    ||||||||||||||||||||||| |||| | |||||| ||||||| | ||||||||||||||| |||| ||||  |||||| ||  ||||||  |||| |    
T  41287939 gggtgatttagggtcaattttgacccaataatcacccatccgagtgattttttccttctatcctaattgaataggtgattt-cacatattttctgtttcc 41288037  T
Q  655 tttcgtttatttttgtgatttcgtcgtct 683  Q
    |||||||| |||| ||||||| |||||||    
T  41288038 tttcgtttgttttagtgattttgtcgtct 41288066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 558 - 683
Target Start/End: Complemental strand, 1281276 - 1281150
Alignment:
Q  558 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 655  Q
    ||||||||||||||| ||||||| | |||  |||||| ||||| || |||||| || ||| | |||| ||||| ||||||| |  ||||||  |||||||    
T  1281276 gggtgatttagggtccattttgaccaaaaaatcacccatccgaattgtttttcattatattctaattgaataagtgatttc-acatattttttgttttct 1281178  T
Q  656 ttcgtttatttttgtgatttcgtcgtct 683  Q
    ||||||| ||||||||||||||||||||    
T  1281177 ttcgtttgtttttgtgatttcgtcgtct 1281150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 558 - 683
Target Start/End: Complemental strand, 17473862 - 17473736
Alignment:
Q  558 gggtgatttagggtcaattttgaac-caaagtca-ccctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 655  Q
    ||||||||||||||||||||||| |  ||| ||| |||||||| || ||||||||| ||||| |||| ||||| |||||| ||  ||||||  |||| ||    
T  17473862 gggtgatttagggtcaattttgaccaaaaaatcacccctccgaattgtttttccttttatcctaattgaataagtgattt-cacatattttctgtttcct 17473764  T
Q  656 ttcgtttatttttgtgatttcgtcgtct 683  Q
    ||| ||| |||||||||||| |||||||    
T  17473763 ttcatttgtttttgtgattttgtcgtct 17473736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 558 - 683
Target Start/End: Original strand, 17579352 - 17579478
Alignment:
Q  558 gggtgatttagggtcaattttgaac-caaagtca-ccctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 655  Q
    ||||||||||||||||||||||| |  ||| ||| |||||||| || ||||||||| ||||| |||| ||||| |||||| ||  ||||||  |||| ||    
T  17579352 gggtgatttagggtcaattttgaccaaaaaatcacccctccgaattgtttttccttttatcctaattgaataagtgattt-cacatattttctgtttcct 17579450  T
Q  656 ttcgtttatttttgtgatttcgtcgtct 683  Q
    ||| ||| |||||||||||| |||||||    
T  17579451 ttcatttgtttttgtgattttgtcgtct 17579478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 558 - 684
Target Start/End: Complemental strand, 48304534 - 48304405
Alignment:
Q  558 gggtgatttagggtcaattttgaacc-aaagtcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 655  Q
    ||||||||||||||||||||||| || ||| |||||| ||||| ||  ||||||| |||||| |||| ||||| |||||| |||  |||||  |||||||    
T  48304534 gggtgatttagggtcaattttgacccaaaaatcacccatccgaattgcttttcctgctatcctaattgaataagtgattt-catagattttctgttttct 48304436  T
Q  656 ttcgtt--tatttttgtgatttcgtcgtctt 684  Q
    || |||  | |||||||||||||||||||||    
T  48304435 ttagtttgtttttttgtgatttcgtcgtctt 48304405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 558 - 683
Target Start/End: Original strand, 3266364 - 3266496
Alignment:
Q  558 gggtgatttagggtcaattttgaaccaa-agtca-ccctccgagttattttt------ccttctatccaaattaaataattgatttccatgtattttaag 649  Q
    |||||||||| |||||||||||| |||| | ||| ||||||||||| |||||      |||||||||| |||| ||||| ||||||| |  ||||||  |    
T  3266364 gggtgatttatggtcaattttgatccaataatcatccctccgagttgttttttttcttccttctatcctaattgaataagtgatttc-acatattttctg 3266462  T
Q  650 ttttctttcgtttatttttgtgatttcgtcgtct 683  Q
    ||| |||||||||||||||||||||| |||||||    
T  3266463 tttcctttcgtttatttttgtgattttgtcgtct 3266496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 603 - 679
Target Start/End: Complemental strand, 15674704 - 15674629
Alignment:
Q  603 tttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtc 679  Q
    |||||||| |||||| |||| ||||| ||||||| |  ||||||  |||||||||||||| ||||||||||||||||    
T  15674704 tttttcctcctatcctaattgaataagtgatttc-acatattttctgttttctttcgtttgtttttgtgatttcgtc 15674629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 603 - 681
Target Start/End: Original strand, 21990691 - 21990768
Alignment:
Q  603 tttttccttctatccaaattaaataattgatttc-catgtattttaagttttctttcgtttatttttgtgatttcgtcgt 681  Q
    |||||||| |||||| |||| ||||| ||||||| ||| |||| |  |||||||||||||| ||||||||||||||||||    
T  21990691 tttttcctgctatcctaattgaataagtgatttcacatatattct--gttttctttcgtttgtttttgtgatttcgtcgt 21990768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 596 - 683
Target Start/End: Complemental strand, 24320322 - 24320236
Alignment:
Q  596 cgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtct 683  Q
    |||||| ||||||||||||||  |||| ||||| ||||||| |  ||||||  ||||||||| |||| ||||||||||||| ||||||    
T  24320322 cgagttgtttttccttctatcttaatttaataagtgatttc-acatattttttgttttcttttgtttgtttttgtgatttcatcgtct 24320236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 594 - 684
Target Start/End: Original strand, 2622612 - 2622701
Alignment:
Q  594 tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtctt 684  Q
    ||||| || ||||||||||||||  |||| ||||| | ||||| |  ||||||  |||||||| ||||| |||||||||||||||||||||    
T  2622612 tccgaattgtttttccttctatcttaattgaataagtaatttc-agatattttctgttttcttgcgtttgtttttgtgatttcgtcgtctt 2622701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 649 - 683
Target Start/End: Complemental strand, 36719599 - 36719565
Alignment:
Q  649 gttttctttcgtttatttttgtgatttcgtcgtct 683  Q
    |||||||||||||| ||||||||||||||||||||    
T  36719599 gttttctttcgtttgtttttgtgatttcgtcgtct 36719565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 603 - 677
Target Start/End: Original strand, 42644705 - 42644778
Alignment:
Q  603 tttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcg 677  Q
    ||||||||||||||| |||| ||||| ||||||| |  |||| |  |||||||||||||| ||||||||||||||    
T  42644705 tttttccttctatcctaattgaataagtgatttc-acatattctctgttttctttcgtttgtttttgtgatttcg 42644778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 560 - 675
Target Start/End: Original strand, 4028168 - 4028281
Alignment:
Q  560 gtgatttagggtcaattttgaaccaaagtcaccctccgagttatttttccttctatccaaattaaataattga-tttccatgtattttaagttttctttc 658  Q
    |||||||||||| |||||||| ||||| |||||  |||| ||||||||| |||| |   | |||||||| ||| ||| ||| ||||||||||||||||||    
T  4028168 gtgatttagggttaattttgacccaaaatcacc--ccgacttatttttctttctcttttagttaaataagtgatttttcatatattttaagttttctttc 4028265  T
Q  659 gtttatttttgtgattt 675  Q
      || ||||||||||||    
T  4028266 -attgtttttgtgattt 4028281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 68; Significance: 5e-30; HSPs: 35)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 533 - 683
Target Start/End: Complemental strand, 12717280 - 12717130
Alignment:
Q  533 tttcttcttattgtctattgaagaagggtgatttagggtcaattttgaaccaaagtcaccc-tccgagttatttttccttctatccaaattaaataattg 631  Q
    ||||||||| ||||||||||||  ||| |||||||| ||||||||||| ||||| ||| || ||||| || ||||| ||||||||| |||||||||| ||    
T  12717280 tttcttcttcttgtctattgaaagagg-tgatttagagtcaattttgacccaaaatcatccgtccgacttgttttttcttctatcctaattaaataagtg 12717182  T
Q  632 atttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtct 683  Q
    |||||||  |||||| ||||||||||||||| ||||||||||||| ||||||    
T  12717181 atttccacatattttcagttttctttcgtttgtttttgtgatttcttcgtct 12717130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 489 - 683
Target Start/End: Complemental strand, 22049611 - 22049417
Alignment:
Q  489 tttttctctcgcttctcttcttctcaaaccttaaccgtcggccatttcttcttattgtctattgaagaagggtgatttagggtcaattttgaaccaaagt 588  Q
    |||||||||| ||||| | ||||||||||| || | || | || ||||||||| |||||||  ||| |||||||||||||||| |||||||| ||||| |    
T  22049611 tttttctctctcttctttccttctcaaaccgtagc-gtagcccctttcttcttcttgtctaccgaacaagggtgatttagggttaattttgacccaaaat 22049513  T
Q  589 caccctc-cgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtct 683  Q
    ||||||  ||| || ||||||||||||||| |||| ||||| |||||||||  |||||| ||||||||||| ||||||||| || |||||| ||||    
T  22049512 caccctttcgaattgtttttccttctatcctaattgaataagtgatttccacatattttcagttttctttcatttatttttatggtttcgttgtct 22049417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 494 - 683
Target Start/End: Original strand, 22757015 - 22757202
Alignment:
Q  494 ctctcgcttctcttcttctcaaaccttaaccgtcggccatttcttcttattgtctattgaagaagggtgatttagggtcaattttgaaccaaag-tcacc 592  Q
    ||||| ||||||| ||||||||||| || |||||  || ||||||||| || |   ||  ||| |||||||||||||||||||||||  ||||  |||||    
T  22757015 ctctctcttctctccttctcaaaccctagccgtcacccttttcttcttcttct---tttcagaggggtgatttagggtcaattttgactcaaaaatcacc 22757111  T
Q  593 -ctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtct 683  Q
     |||||| || ||||||||||||||| |||| ||||| ||||||| |  ||||||| ||||| |||||||| ||||||||||||||||||||    
T  22757112 actccgaattgtttttccttctatcctaattgaataagtgatttc-acatattttatgttttttttcgtttgtttttgtgatttcgtcgtct 22757202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 591 - 683
Target Start/End: Original strand, 6881973 - 6882064
Alignment:
Q  591 ccctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtct 683  Q
    |||| |||||||||||||||||||||| |||||||||| |||||| ||  ||||||  |||||||||||||| ||||||||||||||||||||    
T  6881973 cccttcgagttatttttccttctatcctaattaaataagtgattt-cacatattttctgttttctttcgtttgtttttgtgatttcgtcgtct 6882064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 558 - 684
Target Start/End: Original strand, 7060306 - 7060433
Alignment:
Q  558 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 655  Q
    |||| |||||||||||||||| | |||||  |||||| ||||| || ||||||||||||||| |||| ||||| ||||||| |  ||||||| |||||||    
T  7060306 gggtaatttagggtcaattttaacccaaaaatcacccctccgaattgtttttccttctatcctaattgaataagtgatttc-acatattttatgttttct 7060404  T
Q  656 ttcgtttatttttgtgatttcgtcgtctt 684  Q
    ||||||| |||||||||||||||||||||    
T  7060405 ttcgtttgtttttgtgatttcgtcgtctt 7060433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 554 - 683
Target Start/End: Complemental strand, 20400046 - 20399916
Alignment:
Q  554 agaagggtgatttagggtcaattttgaaccaaag-tcaccctcc-gagttatttttccttctatccaaattaaataattgatttccatgtattttaagtt 651  Q
    ||||||| ||||||||||||||||||| |||||  |||||| || || ||  |||| ||||||||| |||| ||||| ||||||| || ||||||  |||    
T  20400046 agaagggcgatttagggtcaattttgacccaaaaatcacccacccgaattgctttttcttctatcctaattgaataagtgatttc-atatattttctgtt 20399948  T
Q  652 ttctttcgtttatttttgtgatttcgtcgtct 683  Q
    ||||||||||||||||||||||||||||||||    
T  20399947 ttctttcgtttatttttgtgatttcgtcgtct 20399916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 558 - 683
Target Start/End: Original strand, 27394812 - 27394938
Alignment:
Q  558 gggtgatttagggtcaattttgaaccaaag-tcaccct-ccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 655  Q
    ||||||||||||||||||||||| |||||  ||||||| |||  |||||||||||||||||| |||| ||||| | ||||  |  ||||||| |||||||    
T  27394812 gggtgatttagggtcaattttgacccaaaaatcacccttccggattatttttccttctatcctaattgaataagtaatttaaaa-tattttatgttttct 27394910  T
Q  656 ttcgtttatttttgtgatttcgtcgtct 683  Q
    ||||||| ||||||||||||||||||||    
T  27394911 ttcgtttgtttttgtgatttcgtcgtct 27394938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 558 - 683
Target Start/End: Complemental strand, 29268916 - 29268790
Alignment:
Q  558 gggtgatttagggtcaattttgaacc-aaagtcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 655  Q
    |||||||||| |||||||||||| || ||| |||||| |||||||| ||||||||| ||||| |||| ||||| ||||||| |  ||||||  |||||||    
T  29268916 gggtgatttaaggtcaattttgaccctaaaatcacccctccgagttgtttttccttttatcctaattgaataagtgatttc-acatattttctgttttct 29268818  T
Q  656 ttcgtttatttttgtgatttcgtcgtct 683  Q
    ||||||| ||||||||||||||||||||    
T  29268817 ttcgtttgtttttgtgatttcgtcgtct 29268790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 558 - 683
Target Start/End: Complemental strand, 44757181 - 44757055
Alignment:
Q  558 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 655  Q
    |||||||||| |||||||||||| |||||  |||||| | |||||| ||||||||||||||| |||| ||||| ||||||| |  ||||||| |||||||    
T  44757181 gggtgatttaaggtcaattttgacccaaaaatcacccattcgagttgtttttccttctatcctaattgaataagtgatttc-acatattttatgttttct 44757083  T
Q  656 ttcgtttatttttgtgatttcgtcgtct 683  Q
    ||||||| ||||| ||||||||||||||    
T  44757082 ttcgtttgtttttatgatttcgtcgtct 44757055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 561 - 683
Target Start/End: Original strand, 13965545 - 13965668
Alignment:
Q  561 tgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctttc 658  Q
    |||||||||||||||||||| |||||  |||||| | ||| || ||||||||||||||| |||| ||||| ||||||| |  |||| || ||||||||||    
T  13965545 tgatttagggtcaattttgacccaaaaatcaccccttcgaattgtttttccttctatcctaattgaataagtgatttc-acatattctatgttttctttc 13965643  T
Q  659 gtttatttttgtgatttcgtcgtct 683  Q
    |||| ||||||||||||||||||||    
T  13965644 gtttgtttttgtgatttcgtcgtct 13965668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 558 - 684
Target Start/End: Original strand, 24825631 - 24825758
Alignment:
Q  558 gggtgatttagggtcaattttgaaccaaag-tcac-cctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 655  Q
    |||||||||||| |||||||||| | |||  |||| |||||||||| ||||||||||||||| |||| ||||| ||||||| |  ||||||   ||||||    
T  24825631 gggtgatttaggatcaattttgacctaaaaatcactcctccgagttgtttttccttctatcctaattgaataagtgatttc-acatattttctattttct 24825729  T
Q  656 ttcgtttatttttgtgatttcgtcgtctt 684  Q
    ||||||| |||||||||||||||||||||    
T  24825730 ttcgtttgtttttgtgatttcgtcgtctt 24825758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 592 - 683
Target Start/End: Original strand, 50801235 - 50801325
Alignment:
Q  592 cctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtct 683  Q
    ||||||| |||||||||||| ||||| |||| ||||| ||||||| |  ||||||  |||||||||||||||||||||||||||||||||||    
T  50801235 cctccgaattatttttccttttatcctaattgaataagtgatttc-acatattttctgttttctttcgtttatttttgtgatttcgtcgtct 50801325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 559 - 683
Target Start/End: Original strand, 5814330 - 5814455
Alignment:
Q  559 ggtgatttagggtcaattttgaaccaaag-tca-ccctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctt 656  Q
    |||||||||||||||||||||| |||||  ||| |||||| |||| |||| |||||||||  |||| ||||| | ||||| |  |||||| |||||||||    
T  5814330 ggtgatttagggtcaattttgatccaaaaatcatccctccaagttgttttcccttctatcttaattgaataagttatttc-acatatttttagttttctt 5814428  T
Q  657 tcgtttatttttgtgatttcgtcgtct 683  Q
    |||||| ||||||||||||||||||||    
T  5814429 tcgtttgtttttgtgatttcgtcgtct 5814455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 533 - 668
Target Start/End: Original strand, 3159000 - 3159136
Alignment:
Q  533 tttcttcttattgtctattgaagaagggtgatttagggtcaattttgaaccaaagtcaccct-ccgagttatttttccttctatccaaattaaataattg 631  Q
    ||||||||| |||| ||| ||||| || |||||||||||||| ||| | ||||| ||||  | ||||||| ||||||||||||||  |||||||||| ||    
T  3159000 tttcttcttcttgtttatcgaagagggatgatttagggtcaacttttacccaaaatcactattccgagttgtttttccttctatcataattaaataagtg 3159099  T
Q  632 atttccatgtattttaagttttctttcgtttattttt 668  Q
    |||| ||  |||||| || |||||||||||| |||||    
T  3159100 attttcacatattttcagctttctttcgtttgttttt 3159136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 558 - 683
Target Start/End: Original strand, 6911662 - 6911788
Alignment:
Q  558 gggtgatttagggtcaattttgaaccaaag-tcacc-ctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 655  Q
    ||||||||||||||||||||||| |||||  ||||| |||||| || |||||||||||| |  |||| ||||| ||||||| |  ||||||  |||||||    
T  6911662 gggtgatttagggtcaattttgatccaaaaatcacctctccgatttgtttttccttctaccttaattgaataagtgatttc-acatattttctgttttct 6911760  T
Q  656 ttcgtttatttttgtgatttcgtcgtct 683  Q
    ||||||| ||||||||||||| ||||||    
T  6911761 ttcgtttgtttttgtgatttcttcgtct 6911788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 558 - 683
Target Start/End: Complemental strand, 43244520 - 43244394
Alignment:
Q  558 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 655  Q
    ||||||||||||||||||||||| |||||  |||||| || || || ||||||||||||||| |||| ||||| ||||||| |  ||||||   ||||||    
T  43244520 gggtgatttagggtcaattttgacccaaaaatcacccctctgaattgtttttccttctatcctaattgaataagtgatttc-acatattttcgattttct 43244422  T
Q  656 ttcgtttatttttgtgatttcgtcgtct 683  Q
    ||||||| |||||||||||| |||||||    
T  43244421 ttcgtttgtttttgtgattttgtcgtct 43244394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 558 - 678
Target Start/End: Complemental strand, 478150 - 478030
Alignment:
Q  558 gggtgatttagggtcaattttgaaccaaag-tcaccctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctt 656  Q
    |||||||||| |||||||||||| |||||  ||||| ||||| || ||||||||| ||||| |||| ||||| ||||||  |  ||||||  |||| |||    
T  478150 gggtgatttatggtcaattttgacccaaaaatcaccatccgaattgtttttccttatatcctaattgaataagtgatttt-acatattttctgtttcctt 478052  T
Q  657 tcgtttatttttgtgatttcgt 678  Q
    ||||||||||||||||||||||    
T  478051 tcgtttatttttgtgatttcgt 478030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 558 - 681
Target Start/End: Complemental strand, 24568852 - 24568728
Alignment:
Q  558 gggtgatttagggtcaattttgaaccaaag-tcaccct-ccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 655  Q
    |||||||||||||| |||||||| |||||  ||||||| |||| |||||||||||||||||| |||| ||||| ||||||  |  |||| |  ||||| |    
T  24568852 gggtgatttagggtgaattttgacccaaaaatcacccttccgaattatttttccttctatcctaattgaataagtgattt-tacatattatctgttttat 24568754  T
Q  656 ttcgtttatttttgtgatttcgtcgt 681  Q
    ||||||| ||||||||||||||||||    
T  24568753 ttcgtttgtttttgtgatttcgtcgt 24568728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 591 - 683
Target Start/End: Complemental strand, 43493391 - 43493300
Alignment:
Q  591 ccctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtct 683  Q
    |||||||| || ||||||||||||||  |||| ||||| ||||||| |  ||||||  ||||||||| |||||||||||||||||||||||||    
T  43493391 ccctccgaattgtttttccttctatcttaattgaataagtgatttc-acatattttttgttttcttttgtttatttttgtgatttcgtcgtct 43493300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 558 - 683
Target Start/End: Complemental strand, 394413 - 394287
Alignment:
Q  558 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 655  Q
    ||||||||||||||||||||||| |||||  |||||| ||||| || ||||||||||||||| |||| ||||| |||||| ||  | ||||  | |||||    
T  394413 gggtgatttagggtcaattttgacccaaaaatcacccctccgaattgtttttccttctatcctaattcaataagtgattt-cacatcttttctgctttct 394315  T
Q  656 ttcgtttatttttgtgatttcgtcgtct 683  Q
    ||||||| ||| | ||||||||||||||    
T  394314 ttcgtttgtttctatgatttcgtcgtct 394287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 558 - 683
Target Start/End: Complemental strand, 7861344 - 7861219
Alignment:
Q  558 gggtgatttagggtcaattttgaaccaaag-tcacc-ctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 655  Q
    |||||||||||  |||||||||| |||||  ||||| ||| || |||||||||||||||||| |||||||||| |||||| ||  ||||||  ||||| |    
T  7861344 gggtgatttagaatcaattttgacccaaaaatcaccactctgaattatttttccttctatcctaattaaataagtgattt-cacatattttctgtttt-t 7861247  T
Q  656 ttcgtttatttttgtgatttcgtcgtct 683  Q
    ||| ||| ||||||||||||||||||||    
T  7861246 ttcatttgtttttgtgatttcgtcgtct 7861219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 558 - 683
Target Start/End: Original strand, 30202020 - 30202146
Alignment:
Q  558 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 655  Q
    |||||||||| |||||||||||| |||||  |||||| | | |||| ||||||||| ||||  |||| ||||| ||||||| |  ||||||  |||||||    
T  30202020 gggtgatttaaggtcaattttgatccaaaaatcaccccttctagttgtttttccttttatcttaattgaataagtgatttc-acatattttctgttttct 30202118  T
Q  656 ttcgtttatttttgtgatttcgtcgtct 683  Q
    ||||||| ||||||||||||||||||||    
T  30202119 ttcgtttgtttttgtgatttcgtcgtct 30202146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 500 - 683
Target Start/End: Original strand, 25658091 - 25658275
Alignment:
Q  500 cttctcttcttctcaaaccttaaccgtcggccatttcttcttattgtctattgaagaagggtgatttagggtcaattttgaaccaaag-tcacc-ctccg 597  Q
    ||||||| ||||||||||| || |||||  || ||||||||| || |   ||  ||| |||||||||||||| ||||||||  ||||  ||||| ||||     
T  25658091 cttctctccttctcaaaccctagccgtcacccttttcttcttcttcttctttttagaggggtgatttagggttaattttgactcaaaaatcacctctcca 25658190  T
Q  598 agttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtct 683  Q
    | || ||||||||||| ||| |||| ||||| ||||||| |  ||||||  |||||||||||| | ||||||||||||||||||||    
T  25658191 aattgtttttccttctttcctaatttaataagtgatttc-acatattttctgttttctttcgtatgtttttgtgatttcgtcgtct 25658275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 558 - 683
Target Start/End: Original strand, 24100121 - 24100249
Alignment:
Q  558 gggtgatttagggtcaattttgaacc-aaagtcaccc-tccgagttatttttccttctatccaaattaaataattgatttc-catgtattttaagttttc 654  Q
    |||||||||||| ||||||||||||| ||| | |||| ||||| || ||||||||||||||  |||| ||||| ||||||| ||| | || |  ||||||    
T  24100121 gggtgatttaggatcaattttgaaccaaaaattacccatccgaattgtttttccttctatcgtaattgaataagtgatttcacatattttctctgttttc 24100220  T
Q  655 tttcgtttatttttgtgatttcgtcgtct 683  Q
    |||||||| ||||||  ||||||||||||    
T  24100221 tttcgtttgtttttgcaatttcgtcgtct 24100249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 558 - 684
Target Start/End: Complemental strand, 26742602 - 26742475
Alignment:
Q  558 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 655  Q
    |||||||||||| |||||||||| |||||  |||||| ||||| || |||||| |||||||  |||| ||||| ||||||| |  ||||||  |||||||    
T  26742602 gggtgatttaggatcaattttgacccaaaaatcacccatccgaattgtttttctttctatcttaattgaataagtgatttc-acatattttctgttttct 26742504  T
Q  656 ttcgtttatttttgtgatttcgtcgtctt 684  Q
    ||||||| |||| ||||||| ||||||||    
T  26742503 ttcgtttgttttcgtgattttgtcgtctt 26742475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 563 - 683
Target Start/End: Complemental strand, 7083950 - 7083829
Alignment:
Q  563 atttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgt 660  Q
    |||||||||||||||||| |||||  |||||| |  || || ||||||||||||||  |||| ||||| ||||||| |  ||||||   |||||||||||    
T  7083950 atttagggtcaattttgatccaaaaatcacccctatgaattgtttttccttctatcataattgaataagtgatttc-acatattttctattttctttcgt 7083852  T
Q  661 ttatttttgtgatttcgtcgtct 683  Q
    || ||||||||||||||||||||    
T  7083851 ttgtttttgtgatttcgtcgtct 7083829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 558 - 683
Target Start/End: Original strand, 42197535 - 42197662
Alignment:
Q  558 gggtgatttagggtcaattttga-accaaagtcaccctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaag--ttttc 654  Q
    |||||||||||||| |||||||| |  ||| ||||  ||||| |||||||||||||||||| |||| ||||| ||| || || |||||||  |  ||||     
T  42197535 gggtgatttagggttaattttgacaaaaaaatcactttccgaattatttttccttctatcctaatttaataagtgactt-cacgtattttttgttttttt 42197633  T
Q  655 tttcgtttatttttgtgatttcgtcgtct 683  Q
    |||| ||| ||||||||||||||||||||    
T  42197634 tttcatttgtttttgtgatttcgtcgtct 42197662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 558 - 636
Target Start/End: Original strand, 31521964 - 31522044
Alignment:
Q  558 gggtgatttagggtcaattttgaac-caaagtca-ccctccgagttatttttccttctatccaaattaaataattgatttc 636  Q
    ||||||||||||||||||||||| |  ||| ||| |||||||| || ||||||||||||||| |||| ||||| |||||||    
T  31521964 gggtgatttagggtcaattttgacctaaaaatcacccctccgaattgtttttccttctatcctaattgaataagtgatttc 31522044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 558 - 679
Target Start/End: Original strand, 51152107 - 51152228
Alignment:
Q  558 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 655  Q
    |||||||||| ||||||| |||| |||||  |||||| ||||| || ||||||||||||||| |||| ||||| |||||| ||  ||||||  | |||||    
T  51152107 gggtgatttanggtcaatattgacccaaaaatcacccctccgaattgtttttccttctatcctaatttaataagtgattt-cacatattttctgctttct 51152205  T
Q  656 ttcgtttatttttgtgatttcgtc 679  Q
    |||||||  |||||||||||||||    
T  51152206 ttcgttt-gttttgtgatttcgtc 51152228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 558 - 683
Target Start/End: Complemental strand, 11210452 - 11210326
Alignment:
Q  558 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 655  Q
    ||||||||||||||||||||||  | |||  |||||| ||||| ||||||||||| | |||  |||| ||||| ||||||| |  |||||    ||||||    
T  11210452 gggtgatttagggtcaattttgccctaaaaatcacccctccgaattatttttcctcccatcataattgaataagtgatttc-acatatttactcttttct 11210354  T
Q  656 ttcgtttatttttgtgatttcgtcgtct 683  Q
    ||||||| ||||||||||||||||||||    
T  11210353 ttcgtttgtttttgtgatttcgtcgtct 11210326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 604 - 679
Target Start/End: Original strand, 26674402 - 26674476
Alignment:
Q  604 ttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtc 679  Q
    |||||||||||||  |||| ||||| ||||||| |  ||||||  |||||||||||||| ||||||||||||||||    
T  26674402 ttttccttctatcataattgaataagtgatttc-acatattttttgttttctttcgtttgtttttgtgatttcgtc 26674476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 605 - 667
Target Start/End: Original strand, 27090755 - 27090817
Alignment:
Q  605 tttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttt 667  Q
    ||||||||||||| |||  ||||| ||||||||| ||||||| | ||||||||||||| ||||    
T  27090755 tttccttctatcctaatcgaataagtgatttccacgtattttcatttttctttcgtttgtttt 27090817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 649 - 683
Target Start/End: Complemental strand, 36124396 - 36124362
Alignment:
Q  649 gttttctttcgtttatttttgtgatttcgtcgtct 683  Q
    |||||||||||||| ||||||||||||||||||||    
T  36124396 gttttctttcgtttgtttttgtgatttcgtcgtct 36124362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 649 - 683
Target Start/End: Complemental strand, 38944195 - 38944161
Alignment:
Q  649 gttttctttcgtttatttttgtgatttcgtcgtct 683  Q
    |||||||||||||| ||||||||||||||||||||    
T  38944195 gttttctttcgtttgtttttgtgatttcgtcgtct 38944161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 558 - 684
Target Start/End: Original strand, 39837576 - 39837704
Alignment:
Q  558 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttcc-ttctatccaaattaaataattgatttccatgtattttaagttttc 654  Q
    ||||||||||| ||||||||||| |||||  |||||| | ||| || ||||||| || ||||| |||| ||||| ||||||| |  ||||||  ||||||    
T  39837576 gggtgatttagcgtcaattttgacccaaaaatcaccccttcgatttttttttcccttttatcctaattgaataagtgatttc-acatattttctgttttc 39837674  T
Q  655 tttcgtttatttttgtgatttcgtcgtctt 684  Q
    |||||||| ||||| |||||||||| ||||    
T  39837675 tttcgtttgtttttttgatttcgtcatctt 39837704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 66; Significance: 8e-29; HSPs: 33)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 533 - 681
Target Start/End: Complemental strand, 17767715 - 17767566
Alignment:
Q  533 tttcttcttattgtctattgaagaagggtgatttagggtcaattttgaaccaaagtcaccc-tccgagttatttttccttctatccaaattaaataattg 631  Q
    ||||||||| |||||||  ||||| ||||||||||| ||||||||||| ||| | |||||| | |||||| ||||||||| ||||| |||||||||| ||    
T  17767715 tttcttcttcttgtctaccgaagatgggtgatttagagtcaattttgacccagaatcaccccttcgagttgtttttccttatatcctaattaaataagtg 17767616  T
Q  632 atttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgt 681  Q
    |||||||  |||||| ||||||||||| |||  |||||||||||||||||    
T  17767615 atttccacatattttcagttttctttcatttgattttgtgatttcgtcgt 17767566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 558 - 683
Target Start/End: Original strand, 27095687 - 27095813
Alignment:
Q  558 gggtgatttagggtcaattttgaac-caaagtca-ccctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 655  Q
    ||||||||||||||||||||||| |  ||| ||| ||||||||||| ||||||||||||||| |||| ||||| |||||| ||  ||||||  |||||||    
T  27095687 gggtgatttagggtcaattttgacctaaaaatcacccctccgagttgtttttccttctatcctaattgaataagtgattt-cacatattttttgttttct 27095785  T
Q  656 ttcgtttatttttgtgatttcgtcgtct 683  Q
    ||||||| ||||||||||||||||||||    
T  27095786 ttcgtttgtttttgtgatttcgtcgtct 27095813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 558 - 684
Target Start/End: Original strand, 44942267 - 44942394
Alignment:
Q  558 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 655  Q
    |||||||||| |||||||||||| |||||  |||||| |||||||| ||||| ||||||||| |||| ||||| ||||||| |  ||||||| |||||||    
T  44942267 gggtgatttatggtcaattttgacccaaaaatcacccctccgagttgttttttcttctatcctaattgaataagtgatttc-acatattttatgttttct 44942365  T
Q  656 ttcgtttatttttgtgatttcgtcgtctt 684  Q
    || |||| |||||||||||||||||||||    
T  44942366 tttgtttgtttttgtgatttcgtcgtctt 44942394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 558 - 683
Target Start/End: Complemental strand, 20561271 - 20561145
Alignment:
Q  558 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 655  Q
    ||||||||||||||||||||||| |||||  |||||| ||||| || |||||||||||||||||||  ||||| || |||| |  ||||||  |||||||    
T  20561271 gggtgatttagggtcaattttgacccaaaaatcacccctccgaattgtttttccttctatccaaatcgaataagtggtttc-acatattttctgttttct 20561173  T
Q  656 ttcgtttatttttgtgatttcgtcgtct 683  Q
    ||||||| ||||||||||||||||||||    
T  20561172 ttcgtttgtttttgtgatttcgtcgtct 20561145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 558 - 683
Target Start/End: Original strand, 22597117 - 22597243
Alignment:
Q  558 gggtgatttagggtcaattttgaaccaaag-tca-ccctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 655  Q
    |||||||||| |||||||||||| |||||  ||| ||||||||||| ||||||||||||||| |||||||||| |||||| ||  ||||||  |||||||    
T  22597117 gggtgatttaaggtcaattttgacccaaaaatcatccctccgagttgtttttccttctatcctaattaaataagtgattt-cacatattttttgttttct 22597215  T
Q  656 ttcgtttatttttgtgatttcgtcgtct 683  Q
    ||||||| ||||| |||||| |||||||    
T  22597216 ttcgtttgtttttatgattttgtcgtct 22597243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 558 - 683
Target Start/End: Complemental strand, 43474267 - 43474141
Alignment:
Q  558 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 655  Q
    ||||||||||||||||||||||| |||||  |||||| ||||| || ||||||||||||||| |||| ||||| ||||||| |   |||||  |||||||    
T  43474267 gggtgatttagggtcaattttgacccaaaaatcacccatccgaattgtttttccttctatcctaattgaataagtgatttc-acaaattttctgttttct 43474169  T
Q  656 ttcgtttatttttgtgatttcgtcgtct 683  Q
    ||||||| ||||||||||||||||||||    
T  43474168 ttcgtttgtttttgtgatttcgtcgtct 43474141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 558 - 683
Target Start/End: Original strand, 5754270 - 5754396
Alignment:
Q  558 gggtgatttagggtcaattttgaaccaaag-tca-ccctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 655  Q
    ||||||||||||||||||||||| |||||  ||| |||||||| || ||||||||||||||| | || ||||| ||||||| |  ||||||  |||||||    
T  5754270 gggtgatttagggtcaattttgacccaaaaatcatccctccgaattgtttttccttctatcctagttgaataaatgatttc-acatattttttgttttct 5754368  T
Q  656 ttcgtttatttttgtgatttcgtcgtct 683  Q
    ||| ||| ||||||||||||||||||||    
T  5754369 ttcatttgtttttgtgatttcgtcgtct 5754396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 558 - 683
Target Start/End: Original strand, 33012059 - 33012185
Alignment:
Q  558 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 655  Q
    ||||||||||||||||||||||| |||||  |||| | ||||| || ||||||||||||| | |||| ||||| ||||||| |  |||||| |||||| |    
T  33012059 gggtgatttagggtcaattttgacccaaaaatcactcatccgaattgtttttccttctattctaattgaataagtgatttc-acatattttcagttttgt 33012157  T
Q  656 ttcgtttatttttgtgatttcgtcgtct 683  Q
    ||||||| ||||||||||||||||||||    
T  33012158 ttcgtttgtttttgtgatttcgtcgtct 33012185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 559 - 683
Target Start/End: Original strand, 25067835 - 25067960
Alignment:
Q  559 ggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctt 656  Q
    |||||||||||||||||||||| |||||  |||||| ||||| || |||||||||||||   |||| ||||| ||||||| |  ||||||  ||||||||    
T  25067835 ggtgatttagggtcaattttgacccaaaaatcacccctccgatttgtttttccttctattttaattgaataagtgatttc-acatattttctgttttctt 25067933  T
Q  657 tcgtttatttttgtgatttcgtcgtct 683  Q
    |||||| ||||||||||||||||||||    
T  25067934 tcgtttctttttgtgatttcgtcgtct 25067960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 560 - 675
Target Start/End: Complemental strand, 11798653 - 11798537
Alignment:
Q  560 gtgatttagggtcaattttgaaccaaagtcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctttc 658  Q
    |||||||| |||||||||||| ||||| |||||| |||  |||  |||||||| ||||| |||||||||| | |||||||  |||||| ||||||||||     
T  11798653 gtgatttatggtcaattttgacccaaaatcacccctccatgttgcttttccttatatcctaattaaataagtaatttccacatatttttagttttctttt 11798554  T
Q  659 gtttatttttgtgattt 675  Q
    |||| ||||||||||||    
T  11798553 gtttgtttttgtgattt 11798537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 558 - 683
Target Start/End: Original strand, 12704669 - 12704795
Alignment:
Q  558 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 655  Q
    ||||||||||||||||||||||| |||||  |||||| | ||| || ||||||||| ||||| |||| ||||| ||||||| |  ||||||  |||||||    
T  12704669 gggtgatttagggtcaattttgacccaaaaatcaccccttcgaattgtttttccttatatcctaattgaataagtgatttc-acatattttctgttttct 12704767  T
Q  656 ttcgtttatttttgtgatttcgtcgtct 683  Q
    ||||||| |||||||||||| |||||||    
T  12704768 ttcgtttgtttttgtgattttgtcgtct 12704795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 558 - 679
Target Start/End: Original strand, 15919856 - 15919977
Alignment:
Q  558 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 655  Q
    ||||||||||| ||||||||||| |||||  |||||| |||||||| ||||||||||||||| |||| ||||| |||||| ||  |||||| |  |||||    
T  15919856 gggtgatttagagtcaattttgacccaaaaatcacccctccgagttgtttttccttctatcctaattgaataaatgattt-cacatattttca-atttct 15919953  T
Q  656 ttcgtttatttttgtgatttcgtc 679  Q
    ||||||| ||||||||||||||||    
T  15919954 ttcgtttgtttttgtgatttcgtc 15919977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 603 - 681
Target Start/End: Complemental strand, 6431480 - 6431402
Alignment:
Q  603 tttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgt 681  Q
    ||||||||| ||| | |||||||||| |||||||||  |||||| |||||||||| |||| ||||||||||||||||||    
T  6431480 tttttccttatattctaattaaataagtgatttccacatattttcagttttcttttgtttgtttttgtgatttcgtcgt 6431402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 593 - 679
Target Start/End: Complemental strand, 13740762 - 13740677
Alignment:
Q  593 ctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtc 679  Q
    |||||| || ||||||||||||||| |||| ||||| ||||||| || ||||||  |||||||||||||| ||||||||||||||||    
T  13740762 ctccgaattgtttttccttctatcctaattgaataagtgatttc-atatattttctgttttctttcgtttgtttttgtgatttcgtc 13740677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 558 - 683
Target Start/End: Complemental strand, 11937998 - 11937871
Alignment:
Q  558 gggtgatttagggtcaattttgaacc-aaagtca-ccctccgagttatttttcc-ttctatccaaattaaataattgatttccatgtattttaagttttc 654  Q
    ||||||||||||||||||||||| || ||| ||| |||||||| || ||||||| |||||||| |||| ||||| |||||| ||  ||||||  ||||||    
T  11937998 gggtgatttagggtcaattttgacccaaaaatcacccctccgaattgtttttcctttctatcctaattgaataagtgattt-cacatattttttgttttc 11937900  T
Q  655 tttcgtttatttttgtgatttcgtcgtct 683  Q
    ||||||| |||||||| ||||| ||||||    
T  11937899 tttcgttgatttttgtaatttcttcgtct 11937871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 558 - 683
Target Start/End: Complemental strand, 38535444 - 38535318
Alignment:
Q  558 gggtgatttagggtcaattttgaaccaaa--gtcaccctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 655  Q
    ||||||||||||||||||||||| |||||  |   ||||  || || ||||||||||||||  |||| ||||| ||||||| |  ||||||  |||||||    
T  38535444 gggtgatttagggtcaattttgacccaaaaagcacccctttgaattttttttccttctatcataattgaataagtgatttc-acatattttctgttttct 38535346  T
Q  656 ttcgtttatttttgtgatttcgtcgtct 683  Q
    ||||||| ||||||||||||||||||||    
T  38535345 ttcgtttgtttttgtgatttcgtcgtct 38535318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 621 - 683
Target Start/End: Complemental strand, 11581203 - 11581141
Alignment:
Q  621 ttaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtct 683  Q
    |||||||| |||||| ||| |||||| |||||||||| |||| ||||||||||||||||||||    
T  11581203 ttaaataagtgattttcatatatttttagttttctttggtttgtttttgtgatttcgtcgtct 11581141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 591 - 685
Target Start/End: Complemental strand, 34416865 - 34416772
Alignment:
Q  591 ccctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtcttg 685  Q
    |||||||| || ||||||||| ||||| |||| ||||| ||||||| |  |||||| |||||| ||| |||| ||||||||||||||||||||||    
T  34416865 ccctccgaattgtttttccttatatcctaattgaataagtgatttc-acatattttcagtttttttttgtttgtttttgtgatttcgtcgtcttg 34416772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 603 - 681
Target Start/End: Original strand, 35333534 - 35333611
Alignment:
Q  603 tttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgt 681  Q
    |||||||| |||||| |||| ||||| ||||||| |  ||||||  |||||||||||||||||||||||||||||||||    
T  35333534 tttttcctgctatcctaattgaataagtgatttc-acatattttctgttttctttcgtttatttttgtgatttcgtcgt 35333611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 591 - 683
Target Start/End: Original strand, 4739346 - 4739437
Alignment:
Q  591 ccctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtct 683  Q
    ||||||||||| |||||||||| |||| |||||||||| | |||| ||  ||||||  ||||| || ||||| ||||||||||||||||||||    
T  4739346 ccctccgagttgtttttccttccatcctaattaaataagtaattt-cacatattttctgtttttttccgtttgtttttgtgatttcgtcgtct 4739437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 554 - 683
Target Start/End: Complemental strand, 4604450 - 4604320
Alignment:
Q  554 agaagggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagtt 651  Q
    |||||||||||||| |||||||||||| |||||  | || | | |||||| ||||||||||||| | |||| ||||| ||||||| |  ||||||  | |    
T  4604450 agaagggtgatttaaggtcaattttgacccaaaaattactcattcgagttgtttttccttctattctaattgaataagtgatttc-acatattttctgct 4604352  T
Q  652 ttctttcgtttatttttgtgatttcgtcgtct 683  Q
    |||||||| || ||||||||||||||||||||    
T  4604351 ttctttcgattgtttttgtgatttcgtcgtct 4604320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 558 - 683
Target Start/End: Complemental strand, 9978808 - 9978682
Alignment:
Q  558 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 655  Q
    |||||||||| |||||||||||| |||||  |||||| | | | || ||||||||| ||||  |||| ||||| ||||||| |  ||||||  |||||||    
T  9978808 gggtgatttaaggtcaattttgacccaaaaatcaccccttcaaattgtttttccttttatcttaattgaataaatgatttc-acatattttctgttttct 9978710  T
Q  656 ttcgtttatttttgtgatttcgtcgtct 683  Q
    ||||||| ||||||||||||||||||||    
T  9978709 ttcgtttgtttttgtgatttcgtcgtct 9978682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 594 - 683
Target Start/End: Complemental strand, 4426759 - 4426671
Alignment:
Q  594 tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtct 683  Q
    ||||| || ||||||||||||||| |||| ||||| ||||||| |  ||||||  |||||||||| ||| ||||| ||||||||||||||    
T  4426759 tccgatttgtttttccttctatcctaattgaataaatgatttc-acatattttctgttttctttcatttgtttttttgatttcgtcgtct 4426671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 561 - 684
Target Start/End: Complemental strand, 31908952 - 31908828
Alignment:
Q  561 tgatttagggtcaattttgaaccaaag-tcaccct-ccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctttc 658  Q
    |||||||| ||||||||||| |||||  ||||||| |||| || ||||| ||| ||||| | || ||||| ||||||| |  ||||||  ||||||||||    
T  31908952 tgatttagagtcaattttgatccaaaaatcacccttccgaattgttttttcttttatcctagttgaataagtgatttc-acatattttctgttttctttc 31908854  T
Q  659 gtttatttttgtgatttcgtcgtctt 684  Q
    |||| ||||| |||||||||||||||    
T  31908853 gtttgtttttctgatttcgtcgtctt 31908828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 594 - 683
Target Start/End: Original strand, 32314462 - 32314550
Alignment:
Q  594 tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtct 683  Q
    ||||| || ||||| ||||||||| |||| ||||| ||||||| |  ||||||  |||||||||||||| |||||||||||| |||||||    
T  32314462 tccgaattgttttttcttctatcctaattgaataaatgatttc-acatattttctgttttctttcgtttgtttttgtgattttgtcgtct 32314550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 558 - 636
Target Start/End: Complemental strand, 17268263 - 17268183
Alignment:
Q  558 gggtgatttagggtcaattttgaaccaaag-tca-ccctccgagttatttttccttctatccaaattaaataattgatttc 636  Q
    |||||||||| |||||||||||| |||||  ||| |||| |||||| ||||||||||||||| |||| ||||| |||||||    
T  17268263 gggtgatttatggtcaattttgacccaaaaatcatcccttcgagttgtttttccttctatcctaattgaataagtgatttc 17268183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 649 - 684
Target Start/End: Complemental strand, 10287053 - 10287018
Alignment:
Q  649 gttttctttcgtttatttttgtgatttcgtcgtctt 684  Q
    |||||||||||||| |||||||||||||||||||||    
T  10287053 gttttctttcgtttgtttttgtgatttcgtcgtctt 10287018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 649 - 684
Target Start/End: Original strand, 41797668 - 41797703
Alignment:
Q  649 gttttctttcgtttatttttgtgatttcgtcgtctt 684  Q
    |||||||||||||| |||||||||||||||||||||    
T  41797668 gttttctttcgtttgtttttgtgatttcgtcgtctt 41797703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 641 - 679
Target Start/End: Original strand, 17792540 - 17792578
Alignment:
Q  641 tattttaagttttctttcgtttatttttgtgatttcgtc 679  Q
    |||||| ||||||||||||||| ||||||||||||||||    
T  17792540 tattttcagttttctttcgtttgtttttgtgatttcgtc 17792578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 558 - 683
Target Start/End: Complemental strand, 18089531 - 18089409
Alignment:
Q  558 gggtgatttagggtcaattttgaacc-aaagtcac-cctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 655  Q
    ||||||||||||||||||||||| || ||| |||| ||||||| || ||||| ||| ||||| |||| ||||| |||||| ||  ||||||  |||||||    
T  18089531 gggtgatttagggtcaattttgatccaaaaatcactcctccgaattgttttttcttatatcctaattgaataagtgattt-cacatattttctgttttct 18089433  T
Q  656 ttcgtttatttttgtgatttcgtcgtct 683  Q
    || |    ||||||||||||||||||||    
T  18089432 ttag----tttttgtgatttcgtcgtct 18089409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 650 - 683
Target Start/End: Complemental strand, 12891165 - 12891132
Alignment:
Q  650 ttttctttcgtttatttttgtgatttcgtcgtct 683  Q
    ||||||||||||| ||||||||||||||||||||    
T  12891165 ttttctttcgtttgtttttgtgatttcgtcgtct 12891132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 606 - 675
Target Start/End: Complemental strand, 13879095 - 13879027
Alignment:
Q  606 ttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgattt 675  Q
    |||||||||||| |||| ||||| ||||||| |  ||||||  |||| ||||||||||||||||||||||    
T  13879095 ttccttctatcctaattgaataagtgatttc-acatattttctgtttcctttcgtttatttttgtgattt 13879027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 606 - 675
Target Start/End: Complemental strand, 14019220 - 14019152
Alignment:
Q  606 ttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgattt 675  Q
    |||||||||||| |||| ||||| ||||||| |  ||||||  |||| ||||||||||||||||||||||    
T  14019220 ttccttctatcctaattgaataagtgatttc-acatattttctgtttcctttcgtttatttttgtgattt 14019152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0312 (Bit Score: 60; Significance: 3e-25; HSPs: 1)
Name: scaffold0312
Description:

Target: scaffold0312; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 558 - 683
Target Start/End: Original strand, 6119 - 6245
Alignment:
Q  558 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 655  Q
    ||||||||||||||||||||||| |||||  |||||| |||||||| ||||||||||||||| |||| ||||| ||||||| |  ||||||  |||||||    
T  6119 gggtgatttagggtcaattttgacccaaaaatcacccctccgagttgtttttccttctatcctaattgaataagtgatttc-acatattttctgttttct 6217  T
Q  656 ttcgtttatttttgtgatttcgtcgtct 683  Q
    ||||||| ||||||||||||||||||||    
T  6218 ttcgtttgtttttgtgatttcgtcgtct 6245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 60; Significance: 3e-25; HSPs: 34)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 535 - 683
Target Start/End: Complemental strand, 106206 - 106056
Alignment:
Q  535 tcttcttattgtctattgaagaagggtgatttagggtcaattttgaaccaaagtcaccctc--cgagttatttttccttctatccaaattaaataattga 632  Q
    ||||||| |||||||  ||||| |||||||||||||||||||| || ||||| |||||| |  || ||| |||||| ||||| || |||||||||| |||    
T  106206 tcttctttttgtctaccgaagaggggtgatttagggtcaatttcgatccaaaatcacccccatcgggttgtttttcattctaccctaattaaataagtga 106107  T
Q  633 tttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtct 683  Q
    ||| ||  |||||| ||||||||||||||| |||||||||||| |||||||    
T  106106 ttttcacatatttttagttttctttcgtttgtttttgtgattttgtcgtct 106056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 558 - 683
Target Start/End: Complemental strand, 36691946 - 36691820
Alignment:
Q  558 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 655  Q
    ||||||||||||||||||||||| |||||  |||||| |||||||||||||||||||||||| |||| ||||| |||||| ||  ||||||  |||| ||    
T  36691946 gggtgatttagggtcaattttgacccaaaaatcacccctccgagttatttttccttctatcctaattgaataagtgattt-cacatattttctgtttcct 36691848  T
Q  656 ttcgtttatttttgtgatttcgtcgtct 683  Q
    ||||||| ||||||||||||||||||||    
T  36691847 ttcgtttgtttttgtgatttcgtcgtct 36691820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 558 - 683
Target Start/End: Original strand, 31270308 - 31270434
Alignment:
Q  558 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 655  Q
    ||||||||||||||||||||||| |||||  |||||| | ||| |||||||||||||||||| |||| ||||| ||||||| |  ||||||| |||||||    
T  31270308 gggtgatttagggtcaattttgacccaaaaatcaccccttcgaattatttttccttctatcctaattgaataagtgatttc-acatattttatgttttct 31270406  T
Q  656 ttcgtttatttttgtgatttcgtcgtct 683  Q
    ||||||| ||||||| ||||||||||||    
T  31270407 ttcgtttgtttttgtaatttcgtcgtct 31270434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 558 - 683
Target Start/End: Original strand, 11819065 - 11819191
Alignment:
Q  558 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 655  Q
    ||||||||||||||||||||||| |||||  |||||| ||||| || |||||||||||| |  |||| ||||| ||||||| |  ||||||| |||||||    
T  11819065 gggtgatttagggtcaattttgacccaaaaatcacccctccgatttgtttttccttctaccttaattgaataagtgatttc-acatattttatgttttct 11819163  T
Q  656 ttcgtttatttttgtgatttcgtcgtct 683  Q
    ||| ||| ||||||||||||||||||||    
T  11819164 ttcatttgtttttgtgatttcgtcgtct 11819191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 558 - 682
Target Start/End: Complemental strand, 13702119 - 13701994
Alignment:
Q  558 gggtgatttagggtcaattttgaaccaaa-gtcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 655  Q
    ||||||||||||||||||||||| ||||| ||||||| | ||| ||||||||| |||||||  |||| ||||| ||||||| |  ||||||  |||||||    
T  13702119 gggtgatttagggtcaattttgacccaaaagtcaccccttcgaattatttttctttctatcataattgaataagtgatttc-acatattttctgttttct 13702021  T
Q  656 ttcgtttatttttgtgatttcgtcgtc 682  Q
    ||| ||| |||||||||||||||||||    
T  13702020 ttcatttgtttttgtgatttcgtcgtc 13701994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 558 - 681
Target Start/End: Complemental strand, 53155577 - 53155453
Alignment:
Q  558 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 655  Q
    ||||||||||||||||||||||| |||||  |||||| | ||| || ||||||||| ||||| |||| ||||| ||||||| |  ||||||| |||||||    
T  53155577 gggtgatttagggtcaattttgacccaaaaatcacccattcgaattgtttttccttatatcctaattcaataagtgatttc-acatattttatgttttct 53155479  T
Q  656 ttcgtttatttttgtgatttcgtcgt 681  Q
    ||||||| ||||||| ||||||||||    
T  53155478 ttcgtttgtttttgtaatttcgtcgt 53155453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 604 - 683
Target Start/End: Original strand, 2147756 - 2147835
Alignment:
Q  604 ttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtct 683  Q
    ||||| |||||||| |||| ||||| |||||||||  |||||| ||||||||||| ||| ||||||||||||||||||||    
T  2147756 ttttcgttctatcctaattgaataagtgatttccacatattttcagttttctttcatttgtttttgtgatttcgtcgtct 2147835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 558 - 683
Target Start/End: Original strand, 3456925 - 3457051
Alignment:
Q  558 gggtgatttagggtcaattttgaaccaaag-tcacc-ctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 655  Q
    |||||||||| |||||||||||| |||||  ||||| |||||| || ||||||||||||||| |||| ||||| ||||||  |  ||||||  |||||||    
T  3456925 gggtgatttatggtcaattttgatccaaaaatcacctctccgaattgtttttccttctatcctaattgaataagtgattta-acatattttttgttttct 3457023  T
Q  656 ttcgtttatttttgtgatttcgtcgtct 683  Q
    ||| ||| ||||||||||||||||||||    
T  3457024 ttcctttgtttttgtgatttcgtcgtct 3457051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 558 - 683
Target Start/End: Complemental strand, 48652587 - 48652461
Alignment:
Q  558 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 655  Q
    ||||||||||||||||| ||||| |||||  |||||| ||||| || |||||||||||| |  |||| ||||| ||||||| |  ||||||  |||||||    
T  48652587 gggtgatttagggtcaactttgacccaaaaatcacccctccgatttgtttttccttctaccttaattgaataagtgatttc-acatattttctgttttct 48652489  T
Q  656 ttcgtttatttttgtgatttcgtcgtct 683  Q
    ||||||| ||||||||||||||||||||    
T  48652488 ttcgtttgtttttgtgatttcgtcgtct 48652461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 495 - 683
Target Start/End: Complemental strand, 32080965 - 32080775
Alignment:
Q  495 tctcgcttctcttcttctcaaaccttaaccgtcggcc-atttcttcttattgtctattga-agaagggtgatttagggtcaattttgaaccaaag-tcac 591  Q
    |||| ||||||| ||||||||||| || |||||| || |||||||||| || | | |||  ||| ||||||||||||||||||||||| |||||  ||||    
T  32080965 tctctcttctctccttctcaaaccctagccgtcgccccatttcttcttcttct-tgttgtcagatgggtgatttagggtcaattttgacccaaaaatcac 32080867  T
Q  592 cc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtct 683  Q
    || ||||| || |||||||||||| |  |||| ||||  ||||||| |  ||||||  |||||||||||||| |||||||||||| |||||||    
T  32080866 ccctccgatttgtttttccttctaccttaattgaataggtgatttc-acatattttctgttttctttcgtttgtttttgtgattttgtcgtct 32080775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 603 - 683
Target Start/End: Original strand, 35174733 - 35174812
Alignment:
Q  603 tttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtct 683  Q
    ||||||||||||||| |||| ||||| ||||||| |  ||||||  |||||||||||||| ||||||||||||||||||||    
T  35174733 tttttccttctatcctaattgaataagtgatttc-acatattttttgttttctttcgtttgtttttgtgatttcgtcgtct 35174812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 594 - 682
Target Start/End: Complemental strand, 54239127 - 54239040
Alignment:
Q  594 tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtc 682  Q
    ||||| || ||||||||||||||| |||| ||||| ||||||| |  ||||||  |||||||||||||| |||||||||||||||||||    
T  54239127 tccgaattgtttttccttctatcctaattgaataagtgatttc-acatattttctgttttctttcgtttgtttttgtgatttcgtcgtc 54239040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 558 - 683
Target Start/End: Complemental strand, 31462893 - 31462767
Alignment:
Q  558 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 655  Q
    ||||||||||||||||||||||| |||||  |||||| | ||| || ||||||||| ||||| |||| ||||| ||||||  |  ||||||  |||||||    
T  31462893 gggtgatttagggtcaattttgacccaaaaatcaccccttcgaattgtttttccttatatcctaattgaataagtgatttt-acatattttctgttttct 31462795  T
Q  656 ttcgtttatttttgtgatttcgtcgtct 683  Q
    || |||| ||||||||||||||||||||    
T  31462794 tttgtttgtttttgtgatttcgtcgtct 31462767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 558 - 683
Target Start/End: Complemental strand, 34961005 - 34960879
Alignment:
Q  558 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 655  Q
    |||||| |||||||||||||||| |||||  |||||| || || || ||||| ||||||| | |||| ||||| ||||||| |  ||||||| |||||||    
T  34961005 gggtgacttagggtcaattttgacccaaaaatcacccctcagaattgttttttcttctattctaattgaataagtgatttc-acatattttatgttttct 34960907  T
Q  656 ttcgtttatttttgtgatttcgtcgtct 683  Q
    ||||||| ||||||||||||| ||||||    
T  34960906 ttcgtttgtttttgtgatttcatcgtct 34960879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 558 - 683
Target Start/End: Complemental strand, 36624841 - 36624715
Alignment:
Q  558 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 655  Q
    |||||||| |||||||||  ||| |||||  |||||| ||||| || ||||||||||||||| || ||||||| ||||||| |  ||||||  |||||||    
T  36624841 gggtgattcagggtcaatcatgacccaaaaatcacccatccgaattgtttttccttctatcctaactaaataagtgatttc-acatattttctgttttct 36624743  T
Q  656 ttcgtttatttttgtgatttcgtcgtct 683  Q
    || |||| ||||||||||||||||||||    
T  36624742 tttgtttgtttttgtgatttcgtcgtct 36624715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 558 - 683
Target Start/End: Original strand, 48400881 - 48401007
Alignment:
Q  558 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 655  Q
    ||||||||||||||||||||||| |||||  |||| | || || || |||||||||||| || | || ||||| ||||||| |  ||||||  |||||||    
T  48400881 gggtgatttagggtcaattttgacccaaaaatcacacatcggaattgtttttccttctaccctattttaataagtgatttc-acatattttttgttttct 48400979  T
Q  656 ttcgtttatttttgtgatttcgtcgtct 683  Q
    ||||||| ||||||||||||||||||||    
T  48400980 ttcgtttgtttttgtgatttcgtcgtct 48401007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 644 - 684
Target Start/End: Original strand, 24520706 - 24520746
Alignment:
Q  644 tttaagttttctttcgtttatttttgtgatttcgtcgtctt 684  Q
    ||||||| |||||||||||||||||||||||||||||||||    
T  24520706 tttaagtattctttcgtttatttttgtgatttcgtcgtctt 24520746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 603 - 683
Target Start/End: Complemental strand, 41868394 - 41868315
Alignment:
Q  603 tttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtct 683  Q
    ||||||||||||||| |||| ||||| ||||||| |  ||||||  ||||||||||||||  |||||||||||||||||||    
T  41868394 tttttccttctatcctaattgaataagtgatttc-acatattttctgttttctttcgtttgcttttgtgatttcgtcgtct 41868315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 621 - 681
Target Start/End: Complemental strand, 47733960 - 47733900
Alignment:
Q  621 ttaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgt 681  Q
    |||||| | ||||||||||||| ||| ||||||||||||||| ||||||||||||| ||||    
T  47733960 ttaaatgagtgatttccatgtaattttagttttctttcgtttgtttttgtgatttcatcgt 47733900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 603 - 683
Target Start/End: Complemental strand, 49628187 - 49628108
Alignment:
Q  603 tttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtct 683  Q
    ||||||||||||||| | || ||||| ||||||| |  ||||||  |||||||||||||| ||||||||||||||||||||    
T  49628187 tttttccttctatcctagttgaataagtgatttc-acatattttttgttttctttcgtttgtttttgtgatttcgtcgtct 49628108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 558 - 683
Target Start/End: Original strand, 14585444 - 14585570
Alignment:
Q  558 gggtgatttagggtcaattttgaaccaaag-tcac-cctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 655  Q
    ||||||||||| ||||||||||| |||||  |||| ||||  | || ||||||||||||||| |||| ||||| ||||||| |  ||||||  |||||||    
T  14585444 gggtgatttagagtcaattttgacccaaaaatcactcctctaaattgtttttccttctatcctaattgaataagtgatttc-acatattttctgttttct 14585542  T
Q  656 ttcgtttatttttgtgatttcgtcgtct 683  Q
    || |||| ||||||||||||| ||||||    
T  14585543 tttgtttgtttttgtgatttcctcgtct 14585570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 603 - 684
Target Start/End: Original strand, 22484994 - 22485074
Alignment:
Q  603 tttttccttctatccaaattaaataattgatttc-catgtattttaagttttctttcgtttatttttgtgatttcgtcgtctt 684  Q
    ||||||||||||||| |||| ||||| ||||||| |||  |||||  |||||||||||||| |||||||||||||||| ||||    
T  22484994 tttttccttctatcctaattgaataagtgatttcgcat--attttctgttttctttcgtttgtttttgtgatttcgtcatctt 22485074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 558 - 683
Target Start/End: Original strand, 38527245 - 38527371
Alignment:
Q  558 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 655  Q
    |||||||||||| ||||| ||||||||||  |||| | ||| | || ||||||||||||||  |||| ||||| ||||||| |  ||||||  |||||||    
T  38527245 gggtgatttaggatcaatcttgaaccaaaaatcacacatccaaattgtttttccttctatcttaattgaataaatgatttc-acatattttctgttttct 38527343  T
Q  656 ttcgtttatttttgtgatttcgtcgtct 683  Q
    ||||||| ||||| ||||||||||||||    
T  38527344 ttcgtttgtttttatgatttcgtcgtct 38527371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 559 - 683
Target Start/End: Complemental strand, 40013421 - 40013293
Alignment:
Q  559 ggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatcca---aattaaataattgatttccatgtattttaagtttt 653  Q
    |||||||||| ||||||||||| |||||  |||||| | ||| || |||||||||||||||    |||| ||||| ||||||| |  ||||||  |||||    
T  40013421 ggtgatttagtgtcaattttgacccaaaaatcacccattcgaattgtttttccttctatcctcctaattgaataagtgatttc-acatattttctgtttt 40013323  T
Q  654 ctttcgtttatttttgtgatttcgtcgtct 683  Q
    ||||||||| ||||||||||||||||||||    
T  40013322 ctttcgtttgtttttgtgatttcgtcgtct 40013293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 621 - 683
Target Start/End: Original strand, 4219226 - 4219288
Alignment:
Q  621 ttaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtct 683  Q
    |||||||| |||||| ||  |||||| ||||||||||||||| ||||| ||||||||||||||    
T  4219226 ttaaataagtgattttcacatattttcagttttctttcgtttgtttttatgatttcgtcgtct 4219288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 649 - 683
Target Start/End: Original strand, 33637477 - 33637511
Alignment:
Q  649 gttttctttcgtttatttttgtgatttcgtcgtct 683  Q
    |||||||||||||||||||||||||||||||||||    
T  33637477 gttttctttcgtttatttttgtgatttcgtcgtct 33637511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 603 - 681
Target Start/End: Complemental strand, 40883968 - 40883891
Alignment:
Q  603 tttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgt 681  Q
    ||||||||| ||||| |||| ||||| |||||||  | ||||||  |||||||||||||| ||||||||||||||||||    
T  40883968 tttttccttttatcctaattgaataagtgatttcact-tattttctgttttctttcgtttgtttttgtgatttcgtcgt 40883891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 619 - 684
Target Start/End: Complemental strand, 40401586 - 40401521
Alignment:
Q  619 aattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtctt 684  Q
    |||||||||| ||||||||| ||||||| |||  | |||||||||||||| ||||||||| |||||    
T  40401586 aattaaataagtgatttccacgtattttcagtcatatttcgtttatttttatgatttcgtagtctt 40401521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 591 - 683
Target Start/End: Complemental strand, 55090695 - 55090604
Alignment:
Q  591 ccctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtct 683  Q
    |||||||| || |||||||||||| |  |||||||||| ||||||| |  ||||||  |||||||||| ||| ||||||||||| ||||||||    
T  55090695 ccctccgatttgtttttccttctaccttaattaaataagtgatttc-acatattttctgttttctttcatttgtttttgtgattccgtcgtct 55090604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 606 - 684
Target Start/End: Original strand, 39610244 - 39610321
Alignment:
Q  606 ttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtctt 684  Q
    |||||||||||| |||| ||||| ||||||| |  ||||||  |||| ||||||||| |||||||||||| ||||||||    
T  39610244 ttccttctatcctaattgaataagtgatttc-acatattttttgtttcctttcgtttgtttttgtgattttgtcgtctt 39610321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 553 - 595
Target Start/End: Complemental strand, 43839643 - 43839601
Alignment:
Q  553 aagaagggtgatttagggtcaattttgaaccaaagtcaccctc 595  Q
    |||| |||||||||||||||||||||  |||||||||||||||    
T  43839643 aagatgggtgatttagggtcaatttttgaccaaagtcaccctc 43839601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 558 - 683
Target Start/End: Complemental strand, 4206658 - 4206532
Alignment:
Q  558 gggtgatttagggtcaattttgaac-caaagtca-ccctccgagttatttttccttctatccaaattaaataattgatttc-catgtattttaagttttc 654  Q
    |||||||||| |||||||||||| |  ||| ||| |||||||| || ||||||| | ||||| |||| ||||| || |||| ||| | |||||  |||||    
T  4206658 gggtgatttatggtcaattttgatcaaaaaatcacccctccgaattgtttttccatatatcctaattgaataagtgttttcacatatttttta--ttttc 4206561  T
Q  655 tttcgtttatttttgtgatttcgtcgtct 683  Q
    ||| |||| ||||||||||||||||||||    
T  4206560 ttttgtttgtttttgtgatttcgtcgtct 4206532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 642 - 683
Target Start/End: Complemental strand, 5327538 - 5327497
Alignment:
Q  642 attttaagttttctttcgtttatttttgtgatttcgtcgtct 683  Q
    ||||| ||||||||||||||| ||||||||||||||| ||||    
T  5327538 attttcagttttctttcgtttgtttttgtgatttcgttgtct 5327497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 649 - 682
Target Start/End: Complemental strand, 34103772 - 34103739
Alignment:
Q  649 gttttctttcgtttatttttgtgatttcgtcgtc 682  Q
    |||||||||||||| |||||||||||||||||||    
T  34103772 gttttctttcgtttgtttttgtgatttcgtcgtc 34103739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 58; Significance: 5e-24; HSPs: 29)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 533 - 683
Target Start/End: Original strand, 2968486 - 2968640
Alignment:
Q  533 tttcttcttattgtctattgaagaagggtgatttagggtcaattttgaaccaaagtcacc----ctccgagttatttttccttctatccaaattaaataa 628  Q
    |||||| || |||||||||||||| | |||||||| ||||||||||||  |||| |||||    ||||||||| |||||| || ||| | ||||||||||    
T  2968486 tttctttttcttgtctattgaagatgagtgatttatggtcaattttgactcaaaatcacctctcctccgagttgtttttctttatattctaattaaataa 2968585  T
Q  629 ttgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtct 683  Q
     |||||| ||  |||||| ||||||||||||||| |||||||||||| |||||||    
T  2968586 gtgattttcacatatttttagttttctttcgtttgtttttgtgattttgtcgtct 2968640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 559 - 684
Target Start/End: Complemental strand, 14600844 - 14600718
Alignment:
Q  559 ggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctt 656  Q
    |||||||||||||||||||||| |||||  ||| || |||||||| ||||| ||||||||| |||| ||||| ||||||| |  ||||||  ||||||||    
T  14600844 ggtgatttagggtcaattttgacccaaaaatcatccatccgagttgttttttcttctatcctaattgaataactgatttc-acatattttctgttttctt 14600746  T
Q  657 tcgtttatttttgtgatttcgtcgtctt 684  Q
    |||||| |||||||||||||||||||||    
T  14600745 tcgtttgtttttgtgatttcgtcgtctt 14600718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 593 - 683
Target Start/End: Original strand, 31308167 - 31308256
Alignment:
Q  593 ctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtct 683  Q
    ||||||||| ||||||||||||||| |||| ||||| ||||||| |  ||||||| |||||||||||||| ||||||||||||||||||||    
T  31308167 ctccgagttgtttttccttctatcctaattgaataagtgatttc-acatattttatgttttctttcgtttgtttttgtgatttcgtcgtct 31308256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 591 - 681
Target Start/End: Complemental strand, 32779063 - 32778973
Alignment:
Q  591 ccctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgt 681  Q
    |||| |||||| ||||||||| ||||  ||||||||||  ||||||||  |||||| ||||||||||||||||||||||||||||||||||    
T  32779063 cccttcgagttgtttttccttatatcataattaaataagagatttccacatattttcagttttctttcgtttatttttgtgatttcgtcgt 32778973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 502 - 622
Target Start/End: Complemental strand, 13576378 - 13576257
Alignment:
Q  502 tctcttcttctcaaaccttaaccgtcggccatttcttcttattgtctattgaagaagggtgatttagggtcaattttgaaccaaagtca-ccctccgagt 600  Q
    ||||| |||||||||| |||  |||||||| ||||||||| |||||||  ||||| |||||||||||| |||||||||| | ||| ||| ||||||||||    
T  13576378 tctctccttctcaaactttagtcgtcggccctttcttcttcttgtctaacgaagaggggtgatttaggatcaattttgacctaaaatcatccctccgagt 13576279  T
Q  601 tatttttccttctatccaaatt 622  Q
    | |||||| |||||||| ||||    
T  13576278 tgtttttctttctatcctaatt 13576257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 558 - 683
Target Start/End: Original strand, 37612635 - 37612761
Alignment:
Q  558 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttc-catgtattttaagttttc 654  Q
    ||||||||||||||||||||||| |||||  |||||| ||||| || ||||||||||||||| | || ||||| ||||||| ||| | |||||  |||||    
T  37612635 gggtgatttagggtcaattttgacccaaaaatcacccctccgaattttttttccttctatcctagttgaataagtgatttcacatatttttta--ttttc 37612732  T
Q  655 tttcgtttatttttgtgatttcgtcgtct 683  Q
    |||||||| ||||||||||||||||||||    
T  37612733 tttcgtttgtttttgtgatttcgtcgtct 37612761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 558 - 683
Target Start/End: Complemental strand, 30027027 - 30026901
Alignment:
Q  558 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 655  Q
    |||||||||||||||| |||||| |||||  |||||| |||||||| ||||| ||||||||  |||| ||||| ||||||| |  ||||||  |||||||    
T  30027027 gggtgatttagggtcatttttgacccaaaaatcacccatccgagttgttttttcttctatcataattgaataagtgatttc-acatattttctgttttct 30026929  T
Q  656 ttcgtttatttttgtgatttcgtcgtct 683  Q
    ||||||| ||||||||||||||||||||    
T  30026928 ttcgtttgtttttgtgatttcgtcgtct 30026901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 557 - 684
Target Start/End: Complemental strand, 10338970 - 10338842
Alignment:
Q  557 agggtgatttagggtcaattttga-accaaagtca-ccctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttc 654  Q
    ||||||||||| ||||||||||||  | ||| ||| |||||||| || ||||||||| ||||| |||| ||||| |||||| ||  ||||||  ||||||    
T  10338970 agggtgatttaaggtcaattttgacgcaaaaatcacccctccgaattgtttttccttttatcctaattgaataagtgattt-cacatattttttgttttc 10338872  T
Q  655 tttcgtttatttttgtgatttcgtcgtctt 684  Q
    |||||||| |||||||||||||||||||||    
T  10338871 tttcgtttgtttttgtgatttcgtcgtctt 10338842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 503 - 595
Target Start/End: Complemental strand, 25939848 - 25939757
Alignment:
Q  503 ctcttcttctcaaaccttaaccgtcggccatttcttcttattgtctattgaagaagggtgatttagggtcaattttgaaccaaagtcaccctc 595  Q
    ||||||||||||||| ||| ||||| | ||||| ||||| |||||||| ||||| || |||||||||||||||||||| ||||| ||||||||    
T  25939848 ctcttcttctcaaactttagccgtcagtcatttattctttttgtctatcgaagatgg-tgatttagggtcaattttgacccaaaatcaccctc 25939757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 559 - 683
Target Start/End: Original strand, 9501572 - 9501698
Alignment:
Q  559 ggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttattttt-ccttctatccaaattaaataattgatttccatgtattttaagttttct 655  Q
    |||||||||||||||||||||| |||||  |||||| || || || ||||| |||||||||| |||| ||||| ||||||| |  ||||||  |||||||    
T  9501572 ggtgatttagggtcaattttgatccaaaaatcacccatctgaattgttttttccttctatcctaattgaataagtgatttc-acatattttctgttttct 9501670  T
Q  656 ttcgtttatttttgtgatttcgtcgtct 683  Q
    ||||||| ||||||||||||||||||||    
T  9501671 ttcgtttgtttttgtgatttcgtcgtct 9501698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 530 - 684
Target Start/End: Original strand, 7281600 - 7281757
Alignment:
Q  530 ccatttcttcttattgtctattgaagaagggtgatttagggtcaattttgaaccaaagtcaccc-tccgagttatttttccttctatccaaattaaataa 628  Q
    |||||||||||| |||||||||||||| |  |||||||||||||||| | | | ||| |||||| ||||| || |||||| |||| | | | || |||||    
T  7281600 ccatttcttcttcttgtctattgaagatgaatgatttagggtcaattctaacctaaaatcacccatccgaattgtttttctttcttttctagttgaataa 7281699  T
Q  629 ttgatttccatgtatttta--agttttctttcgtttatttttgtgatttcgtcgtctt 684  Q
     |||||||||| ||||||   | | ||||||||||| ||||||||||||| |||||||    
T  7281700 gtgatttccatatatttttttattgttctttcgtttgtttttgtgatttcatcgtctt 7281757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 556 - 683
Target Start/End: Complemental strand, 2234619 - 2234491
Alignment:
Q  556 aagggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagtttt 653  Q
    ||||||||| |||||| |||||||| |||||  |||||| | ||| || ||||||||||||||| | || ||||| ||||||| |  ||||||  |||||    
T  2234619 aagggtgatctagggttaattttgatccaaaaatcaccccttcgaattgtttttccttctatcctagttgaataagtgatttc-acatattttttgtttt 2234521  T
Q  654 ctttcgtttatttttgtgatttcgtcgtct 683  Q
    ||||||||| ||||||||||||||||||||    
T  2234520 ctttcgtttgtttttgtgatttcgtcgtct 2234491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 500 - 683
Target Start/End: Complemental strand, 30039536 - 30039358
Alignment:
Q  500 cttctcttcttctcaaaccttaaccgtcggccatttcttcttattgtctattgaagaagggtgatttagggtcaattttgaaccaaagtcac-cctccga 598  Q
    ||||||| ||| |||||||  |||||||   | |||||| || ||||||| |||||| | |||||||| |||||||||||| ||||| |||| | |||||    
T  30039536 cttctctccttttcaaaccccaaccgtcattcctttctttttcttgtctaatgaagatgagtgatttatggtcaattttgacccaaaatcactcatccga 30039437  T
Q  599 gttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtct 683  Q
     || ||||||||||| | | |||| ||||  |||||||||  |||      ||||||||||||| ||||||||||||||||||||    
T  30039436 attgtttttccttcttttctaattgaatatgtgatttccacatat------ttttctttcgtttgtttttgtgatttcgtcgtct 30039358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 603 - 684
Target Start/End: Complemental strand, 39067789 - 39067709
Alignment:
Q  603 tttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtctt 684  Q
    ||||||||||||||| |||| ||||| ||||||| |  ||||||  |||||||||||||| |||||||||||||||||||||    
T  39067789 tttttccttctatcctaatttaataagtgatttc-acatattttctgttttctttcgtttgtttttgtgatttcgtcgtctt 39067709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 558 - 683
Target Start/End: Complemental strand, 24791315 - 24791189
Alignment:
Q  558 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 655  Q
    |||||||||| |||||||||||| |||||  ||| || ||||| || ||||||||| ||||| |||| ||||| ||||||  |  ||||||  |||||||    
T  24791315 gggtgatttatggtcaattttgacccaaaaatcatccatccgaattgtttttccttatatcctaattcaataagtgattta-acatattttctgttttct 24791217  T
Q  656 ttcgtttatttttgtgatttcgtcgtct 683  Q
    ||||||| ||||||||||||||||||||    
T  24791216 ttcgtttgtttttgtgatttcgtcgtct 24791189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 558 - 683
Target Start/End: Complemental strand, 31407895 - 31407769
Alignment:
Q  558 gggtgatttagggtcaattttgaaccaaag-tcacc-ctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 655  Q
    ||||||||||||||||||||||| |||||  ||| | |||||| || ||||||||||||||  | || ||||| ||||||| |  ||||||  |||||||    
T  31407895 gggtgatttagggtcaattttgacccaaaaatcatctctccgaattgtttttccttctatcatagttgaataaatgatttc-acatattttttgttttct 31407797  T
Q  656 ttcgtttatttttgtgatttcgtcgtct 683  Q
    ||||||| ||||| ||||||||||||||    
T  31407796 ttcgtttgtttttatgatttcgtcgtct 31407769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 558 - 683
Target Start/End: Original strand, 41361714 - 41361840
Alignment:
Q  558 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 655  Q
    |||||||||| |||||||||||| |||||  |||||| ||||| || |||||||||||| |  |||| ||||| ||||||| |  ||||||  |||||||    
T  41361714 gggtgatttatggtcaattttgacccaaaaatcacccctccgatttgtttttccttctaccgtaattgaataagtgatttc-acatattttctgttttct 41361812  T
Q  656 ttcgtttatttttgtgatttcgtcgtct 683  Q
    ||||||| |||||||||||| |||||||    
T  41361813 ttcgtttgtttttgtgatttggtcgtct 41361840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 558 - 683
Target Start/End: Complemental strand, 2025356 - 2025230
Alignment:
Q  558 gggtgatttagggtcaattttgaaccaaag-tcaccct-ccgagttatttttccttctatccaaattaaataattgatttc-catgtattttaagttttc 654  Q
    |||||||||| |||||||||||| | |||  ||||||| || |||| ||||||||| ||| | |||| ||||| ||||||| ||||| || |  |||||     
T  2025356 gggtgatttatggtcaattttgaccaaaaaatcacccttccaagttgtttttccttttattctaattgaataagtgatttcacatgttttct--gtttta 2025259  T
Q  655 tttcgtttatttttgtgatttcgtcgtct 683  Q
    |||||||||||||||||||||||||||||    
T  2025258 tttcgtttatttttgtgatttcgtcgtct 2025230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 561 - 683
Target Start/End: Complemental strand, 3204899 - 3204777
Alignment:
Q  561 tgatttagggtcaattttgaaccaaag-tcaccctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcg 659  Q
    |||||||| ||||||||||| |||||  | ||||||||| || ||||||| ||||| | |||| ||| | ||||||| |  ||||||  |||||||||||    
T  3204899 tgatttagagtcaattttgacccaaaaattaccctccgaattgtttttccatctattctaatttaatgagtgatttc-acatattttctgttttctttcg 3204801  T
Q  660 tttatttttgtgatttcgtcgtct 683  Q
    ||| ||| ||||||||||||||||    
T  3204800 tttgtttatgtgatttcgtcgtct 3204777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 558 - 683
Target Start/End: Original strand, 11161864 - 11161990
Alignment:
Q  558 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 655  Q
    |||| |||||||||||||||||| |||||  |||||| | | |||| |||||| || ||||| |||| ||||| | ||||| |  | |||| ||||||||    
T  11161864 gggtaatttagggtcaattttgacccaaaaatcaccccttcaagttgtttttctttatatcctaattgaataagtcatttc-acatcttttcagttttct 11161962  T
Q  656 ttcgtttatttttgtgatttcgtcgtct 683  Q
    ||||||| ||||||||||||||||||||    
T  11161963 ttcgtttgtttttgtgatttcgtcgtct 11161990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 594 - 683
Target Start/End: Complemental strand, 37128595 - 37128507
Alignment:
Q  594 tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtct 683  Q
    ||||| || ||||||||||||||| | || ||||| ||||||| |  ||||||  |||||||||||||| ||||||| ||||||||||||    
T  37128595 tccgaattgtttttccttctatcctagttgaataagtgatttc-acatattttttgttttctttcgtttgtttttgtaatttcgtcgtct 37128507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 558 - 683
Target Start/End: Original strand, 10147928 - 10148055
Alignment:
Q  558 gggtgatttagggtcaattttgaaccaa-agtca-ccctccgagtt-atttttccttctatccaaattaaataattgatttccatgtattttaagttttc 654  Q
    ||||||||||||||||||||||| |||| | ||| |||||||||||  ||||| ||||||||| |||| ||||| |||||| ||  ||||||  |||| |    
T  10147928 gggtgatttagggtcaattttgacccaataatcacccctccgagttgtttttttcttctatcctaattgaataagtgattt-cacatattttctgtttcc 10148026  T
Q  655 tttcgtttatttttgtgatttcgtcgtct 683  Q
    |||||||| |||||| ||||  |||||||    
T  10148027 tttcgtttgtttttgagattatgtcgtct 10148055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 558 - 683
Target Start/End: Original strand, 12329608 - 12329735
Alignment:
Q  558 gggtgatttagggtcaattttgaaccaaag-tcaccctc-cgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 655  Q
    ||||||||||| ||||||||||| |||||  ||||| |  ||| || ||||||||| ||||| |||| ||||| ||||||| |  ||||||  |||||||    
T  12329608 gggtgatttagagtcaattttgatccaaaaatcaccatttcgaattgtttttccttttatcctaattgaataagtgatttc-acatattttctgttttct 12329706  T
Q  656 ttcgttta-tttttgtgatttcgtcgtct 683  Q
    |||||||  ||||||||||||||||||||    
T  12329707 ttcgttttgtttttgtgatttcgtcgtct 12329735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 603 - 679
Target Start/End: Complemental strand, 15288898 - 15288823
Alignment:
Q  603 tttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtc 679  Q
    |||||| |||||||| |||||||||  |||||||  | ||||||  |||||||||||||| ||||||||||||||||    
T  15288898 tttttctttctatcctaattaaatacgtgatttcact-tattttctgttttctttcgtttgtttttgtgatttcgtc 15288823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 603 - 679
Target Start/End: Complemental strand, 15469267 - 15469192
Alignment:
Q  603 tttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtc 679  Q
    |||||| |||||||| |||||||||  |||||||  | ||||||  |||||||||||||| ||||||||||||||||    
T  15469267 tttttctttctatcctaattaaatacgtgatttcact-tattttctgttttctttcgtttgtttttgtgatttcgtc 15469192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 597 - 683
Target Start/End: Original strand, 4757188 - 4757273
Alignment:
Q  597 gagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtct 683  Q
    ||||| ||||||||||||||  |||||||||| |||||| ||  ||||||  |||||||||| ||| |||||  |||||||||||||    
T  4757188 gagttgtttttccttctatcataattaaataaatgattt-cacatattttctgttttctttcatttctttttaagatttcgtcgtct 4757273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 649 - 683
Target Start/End: Complemental strand, 7579910 - 7579876
Alignment:
Q  649 gttttctttcgtttatttttgtgatttcgtcgtct 683  Q
    |||||||||||||| ||||||||||||||||||||    
T  7579910 gttttctttcgtttgtttttgtgatttcgtcgtct 7579876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 641 - 683
Target Start/End: Complemental strand, 13576250 - 13576208
Alignment:
Q  641 tattttaagttttctttcgtttatttttgtgatttcgtcgtct 683  Q
    |||||| |||||||||||||||||||| ||||||| |||||||    
T  13576250 tattttcagttttctttcgtttattttggtgattttgtcgtct 13576208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 594 - 683
Target Start/End: Complemental strand, 23971203 - 23971117
Alignment:
Q  594 tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtct 683  Q
    |||||||| ||||||||||||| | |||| ||||| |||||| ||  ||||||| |||||||||||||  | |||||||||| |||||||    
T  23971203 tccgagttgtttttccttctattctaattgaataagtgattt-cacatattttatgttttctttcgtt--tgtttgtgattttgtcgtct 23971117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0155 (Bit Score: 53; Significance: 5e-21; HSPs: 1)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 559 - 676
Target Start/End: Original strand, 35065 - 35185
Alignment:
Q  559 ggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttc-catgtattttaagttttct 655  Q
    |||||||||||||||||||||| |||||  |||||| |||||||| ||||||||||||||| |||| ||||| ||||||| ||| ||||||  |||||||    
T  35065 ggtgatttagggtcaattttgacccaaaaatcacccatccgagttgtttttccttctatcctaattgaataagtgatttcacatatattttctgttttct 35164  T
Q  656 ttcgtttatttttgtgatttc 676  Q
    ||||||| |||||| ||||||    
T  35165 ttcgtttgtttttgcgatttc 35185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 2e-20; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 558 - 683
Target Start/End: Complemental strand, 6419997 - 6419871
Alignment:
Q  558 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 655  Q
    ||||||||||||||||||||||| |||||  |||||| || ||||| ||||||||||||||| |||| ||||| ||||||| |  ||||||  |||||||    
T  6419997 gggtgatttagggtcaattttgatccaaaaatcacccctctgagttgtttttccttctatcctaattgaataagtgatttc-acatattttttgttttct 6419899  T
Q  656 ttcgtttatttttgtgatttcgtcgtct 683  Q
    ||| ||| ||||||||||||||||||||    
T  6419898 ttcatttgtttttgtgatttcgtcgtct 6419871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 561 - 683
Target Start/End: Complemental strand, 14783307 - 14783184
Alignment:
Q  561 tgatttagggtcaattttgaaccaaag-tcac-cctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctttc 658  Q
    |||||||||||||||||||| |||||  |||| ||||||| || ||||||||||||||| | || ||||| ||||||| |  ||||||  ||||||||||    
T  14783307 tgatttagggtcaattttgacccaaaaatcacgcctccgaattgtttttccttctatcctagttgaataagtgatttc-acatattttttgttttctttc 14783209  T
Q  659 gtttatttttgtgatttcgtcgtct 683  Q
     ||| ||||||||||||||||||||    
T  14783208 atttctttttgtgatttcgtcgtct 14783184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 558 - 683
Target Start/End: Complemental strand, 12481509 - 12481383
Alignment:
Q  558 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 655  Q
    |||||||||||| |||||||||| |||||  |||||| ||||| || |||||||||||| |  |||| ||||| ||||||| |  ||||||  |||||||    
T  12481509 gggtgatttaggatcaattttgacccaaaaatcacccctccgatttgtttttccttctaccttaattgaataagtgatttc-acatattttctgttttct 12481411  T
Q  656 ttcgtttatttttgtgatttcgtcgtct 683  Q
    ||||||| ||||||||||||||||||||    
T  12481410 ttcgtttgtttttgtgatttcgtcgtct 12481383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 558 - 683
Target Start/End: Complemental strand, 15590218 - 15590092
Alignment:
Q  558 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 655  Q
    ||||||||||||||||||||||| |||||  |||||| || || || ||||| ||||||||| |||| ||||| ||||||| |  ||||||  |||||||    
T  15590218 gggtgatttagggtcaattttgacccaaaaatcacccctctgaattgttttttcttctatcctaattgaataagtgatttc-acatattttctgttttct 15590120  T
Q  656 ttcgtttatttttgtgatttcgtcgtct 683  Q
    |||||||  |||||||||||||||||||    
T  15590119 ttcgtttgcttttgtgatttcgtcgtct 15590092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 558 - 683
Target Start/End: Complemental strand, 21507947 - 21507821
Alignment:
Q  558 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 655  Q
    ||||||||||||||||||||||| |||||  |||||| ||| | || ||||||||||||||| | || ||||| ||||||| |  ||||||  |||||||    
T  21507947 gggtgatttagggtcaattttgacccaaacatcacccctccaaattgtttttccttctatcctagttgaataagtgatttc-acatattttttgttttct 21507849  T
Q  656 ttcgtttatttttgtgatttcgtcgtct 683  Q
    ||||||| |||||||||||| |||||||    
T  21507848 ttcgtttgtttttgtgattttgtcgtct 21507821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 559 - 683
Target Start/End: Original strand, 23654233 - 23654358
Alignment:
Q  559 ggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctt 656  Q
    |||||||||||||||||||||| |||||  |||||| ||||| || |||||||||||| |  || | ||||| ||||||| |  ||||||  ||||| ||    
T  23654233 ggtgatttagggtcaattttgacccaaaaatcacccatccgatttgtttttccttctaccttaactgaataagtgatttc-acatattttttgttttatt 23654331  T
Q  657 tcgtttatttttgtgatttcgtcgtct 683  Q
    |||||| ||||||||||||||||||||    
T  23654332 tcgtttgtttttgtgatttcgtcgtct 23654358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 558 - 683
Target Start/End: Complemental strand, 4922021 - 4921894
Alignment:
Q  558 gggtgatttagggtcaattttgaaccaaagtcaccc-tccgagt--tatttttccttctatccaaattaaataattgatttccatgtattttaagttttc 654  Q
    ||||||||||||||||||||||| |||||   |||| ||| |||  | ||||||||||||||  |||| ||||| ||||||| |  |||||| ||||||     
T  4922021 gggtgatttagggtcaattttgacccaaaaatacccctcccagtagtttttttccttctatcttaattgaataagtgatttc-acatattttcagtttta 4921923  T
Q  655 tttcgtttatttttgtgatttcgtcgtct 683  Q
    |||||||| |||||||||||| |||||||    
T  4921922 tttcgtttgtttttgtgattttgtcgtct 4921894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 558 - 683
Target Start/End: Complemental strand, 2304949 - 2304823
Alignment:
Q  558 gggtgatttagggtcaattttgaaccaaag-tca-ccctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 655  Q
    |||||||||||| || ||||||| |||||  ||| ||||| ||||| |||| |||||| ||  |||| ||||| ||||||| |  ||||||  |||||||    
T  2304949 gggtgatttaggatcgattttgacccaaaaatcaaccctctgagttgttttcccttctgtcataattgaataagtgatttc-acatattttctgttttct 2304851  T
Q  656 ttcgtttatttttgtgatttcgtcgtct 683  Q
    ||||||| ||||||||||||||||||||    
T  2304850 ttcgtttgtttttgtgatttcgtcgtct 2304823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 558 - 683
Target Start/End: Complemental strand, 8693799 - 8693670
Alignment:
Q  558 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatcca---aattaaataattgatttccatgtattttaagttt 652  Q
    |||||||||| |||||||||||| |||||  |||||| ||||| || |||||||||||||||    |||| ||||| ||||||| |  ||||||  ||||    
T  8693799 gggtgatttaaggtcaattttgacccaaaaatcacccatccgaattgtttttccttctatcctcctaattgaataagtgatttc-acatattttctgttt 8693701  T
Q  653 tctttcgtttatttttgtgatttcgtcgtct 683  Q
    |||||||||| ||||||| |||| |||||||    
T  8693700 tctttcgtttgtttttgtcattttgtcgtct 8693670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 558 - 683
Target Start/End: Complemental strand, 19402947 - 19402821
Alignment:
Q  558 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 655  Q
    ||||||||| |||||| |||||| |||||  |||||| |  ||||| ||||||||| ||||  |||| || || ||||||| |  ||||||  |||||||    
T  19402947 gggtgatttcgggtcacttttgatccaaaaatcacccctttgagttgtttttccttgtatcataattgaacaagtgatttc-acatattttctgttttct 19402849  T
Q  656 ttcgtttatttttgtgatttcgtcgtct 683  Q
    ||||||| ||||||||||||||||||||    
T  19402848 ttcgtttgtttttgtgatttcgtcgtct 19402821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 605 - 667
Target Start/End: Original strand, 2488169 - 2488231
Alignment:
Q  605 tttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttt 667  Q
    ||||||||||||| |||  ||||| ||||||||| ||||||| | ||||||||||||| ||||    
T  2488169 tttccttctatcctaatcgaataagtgatttccacgtattttcatttttctttcgtttgtttt 2488231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 2e-20; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 558 - 683
Target Start/End: Original strand, 17331310 - 17331436
Alignment:
Q  558 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 655  Q
    ||||||||||||||||||||||| |||||  |||||| ||||| || ||||||||||||||  |||| ||||| ||||||| |  ||||||  |||||||    
T  17331310 gggtgatttagggtcaattttgacccaaaaatcacccctccgatttgtttttccttctatcttaattgaataagtgatttc-acatattttctgttttct 17331408  T
Q  656 ttcgtttatttttgtgatttcgtcgtct 683  Q
    ||||||| ||||||||||||||||||||    
T  17331409 ttcgtttgtttttgtgatttcgtcgtct 17331436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 560 - 683
Target Start/End: Original strand, 17699537 - 17699661
Alignment:
Q  560 gtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttcttt 657  Q
    ||||||||||||||||||||| |||||  |||||| ||||| || ||||||||||||||| |||| ||||| ||||||| |  | ||||  |||||||||    
T  17699537 gtgatttagggtcaattttgacccaaaaatcacccctccgaattgtttttccttctatcctaattgaataagtgatttc-acatcttttctgttttcttt 17699635  T
Q  658 cgtttatttttgtgatttcgtcgtct 683  Q
    ||||| ||||||||||||||||||||    
T  17699636 cgtttgtttttgtgatttcgtcgtct 17699661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 528 - 681
Target Start/End: Original strand, 25961878 - 25962033
Alignment:
Q  528 ggccatttcttcttattgtctattgaagaagggtgatttagggtcaattttgaaccaaagtca-ccctccgagtt-atttttccttctatccaaattaaa 625  Q
    |||| ||||||||| ||||||||  |||| ||||||||||||||||||||||| ||| | ||| || | ||||||  ||||||||| ||||| |||||||    
T  25961878 ggccctttcttcttcttgtctatcaaaga-gggtgatttagggtcaattttgatccagaatcatccattcgagttggtttttccttatatcctaattaaa 25961976  T
Q  626 taattgatttccatgta-ttttaagttttctttcgtttatttttgtgatttcgtcgt 681  Q
    ||| ||||||| |  || |||| ||||||||||| ||| ||||||||||||||||||    
T  25961977 taagtgatttctacatatttttcagttttctttcctttgtttttgtgatttcgtcgt 25962033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 558 - 684
Target Start/End: Original strand, 29097771 - 29097898
Alignment:
Q  558 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 655  Q
    ||||||||||||||||||||||| |||||| |||||| ||||| || |||||||||||| |  |||| ||||| ||||||| |  ||||||  |||||||    
T  29097771 gggtgatttagggtcaattttgacccaaagatcacccctccgatttgtttttccttctaccttaattgaataagtgatttc-acatattttctgttttct 29097869  T
Q  656 ttcgtttatttttgtgatttcgtcgtctt 684  Q
    || |||| |||||||||||||||||||||    
T  29097870 ttagtttgtttttgtgatttcgtcgtctt 29097898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 559 - 683
Target Start/End: Complemental strand, 178244 - 178119
Alignment:
Q  559 ggtgatttagggtcaattttgaaccaaag-tcacc-ctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctt 656  Q
    ||||||||| ||||||||||||  ||||  ||||| ||||||||| | ||||||| ||||| |||| ||||| ||||||| |  ||||||| ||||||||    
T  178244 ggtgatttaaggtcaattttgactcaaaaatcacctctccgagttgtgtttccttatatcctaattgaataagtgatttc-acatattttatgttttctt 178146  T
Q  657 tcgtttatttttgtgatttcgtcgtct 683  Q
    |||||| ||||||||||||||||||||    
T  178145 tcgtttgtttttgtgatttcgtcgtct 178119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 591 - 683
Target Start/End: Complemental strand, 39179932 - 39179841
Alignment:
Q  591 ccctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtct 683  Q
    |||||||| |||||||||||||||| | |||| ||||| ||||||| |  ||||||  |||||||||||||| ||||||||||||||||||||    
T  39179932 ccctccgaattatttttccttctattctaattgaataagtgatttc-acatattttctgttttctttcgtttgtttttgtgatttcgtcgtct 39179841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 559 - 681
Target Start/End: Complemental strand, 12439771 - 12439649
Alignment:
Q  559 ggtgatttagggtcaattttgaaccaaag-tcaccctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttcttt 657  Q
    ||||||||||||  |||||||| | |||  ||||||||||| || |||||| |||||||| | || ||||| ||||||| || ||||||  |||||||||    
T  12439771 ggtgatttagggataattttgacctaaaaatcaccctccgaattgtttttcattctatcctagttgaataagtgatttc-atatattttttgttttcttt 12439673  T
Q  658 cgtttatttttgtgatttcgtcgt 681  Q
    ||||| ||||||||||||||||||    
T  12439672 cgtttgtttttgtgatttcgtcgt 12439649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 558 - 675
Target Start/End: Original strand, 43493854 - 43493972
Alignment:
Q  558 gggtgatttagggtcaattttgaacc-aaagtcacc-ctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 655  Q
    ||||||||||||||||||||||| || ||| ||||| |||||| || ||||||||||||| | |||| ||||| |||||| ||  ||||||  |||||||    
T  43493854 gggtgatttagggtcaattttgatccaaaaatcacctctccgaattgtttttccttctattctaattgaataagtgattt-cacatattttttgttttct 43493952  T
Q  656 ttcgtttatttttgtgattt 675  Q
    ||||||| ||||||||||||    
T  43493953 ttcgtttgtttttgtgattt 43493972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 558 - 683
Target Start/End: Original strand, 6281026 - 6281152
Alignment:
Q  558 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 655  Q
    |||||||||| |||||||||||| |||||  |||||| || || |||||||||||||||| | |||| ||||| ||||||  |  ||||||   ||||||    
T  6281026 gggtgatttatggtcaattttgacccaaaaatcacccctctgaattatttttccttctattctaattgaataagtgatttt-acatattttctattttct 6281124  T
Q  656 ttcgtttatttttgtgatttcgtcgtct 683  Q
    ||||||| ||||||||||||||||||||    
T  6281125 ttcgtttgtttttgtgatttcgtcgtct 6281152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 558 - 683
Target Start/End: Original strand, 28040611 - 28040737
Alignment:
Q  558 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 655  Q
    |||||||||| |||||||||||| |||||  |||||| ||| | |  ||||||||| ||||| |||| ||||| ||||||| |  ||||||  |||||||    
T  28040611 gggtgatttacggtcaattttgacccaaaaatcacccctccaaatcgtttttccttatatcctaattgaataagtgatttc-acatattttctgttttct 28040709  T
Q  656 ttcgtttatttttgtgatttcgtcgtct 683  Q
    ||||||| ||||||||||||||||||||    
T  28040710 ttcgtttgtttttgtgatttcgtcgtct 28040737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 558 - 683
Target Start/End: Complemental strand, 33164607 - 33164481
Alignment:
Q  558 gggtgatttagggtcaattttgaaccaaag-tcac-cctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 655  Q
    |||||||||| ||||||||||||  ||||  |||| ||||||| || |||||||||||| |  |||| ||||| ||||||| |  ||||||  |||||||    
T  33164607 gggtgatttatggtcaattttgactcaaaaatcactcctccgaattgtttttccttctaccttaattgaataagtgatttc-acatattttctgttttct 33164509  T
Q  656 ttcgtttatttttgtgatttcgtcgtct 683  Q
    ||||||| ||||||||||||||||||||    
T  33164508 ttcgtttgtttttgtgatttcgtcgtct 33164481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 561 - 683
Target Start/End: Original strand, 6635234 - 6635358
Alignment:
Q  561 tgatttagggtcaattttgaaccaaag-tcaccctcc--gagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttcttt 657  Q
    |||||||||| ||||||||| |||||  ||||||||   ||||| ||||||||||||||  |||| ||||| ||||||| |  ||||||  |||||||||    
T  6635234 tgatttagggccaattttgacccaaaaatcaccctctctgagttgtttttccttctatcataattgaataagtgatttc-acatattttctgttttcttt 6635332  T
Q  658 cgtttatttttgtgatttcgtcgtct 683  Q
     |||| ||||||||||||||||||||    
T  6635333 agtttgtttttgtgatttcgtcgtct 6635358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 501 - 683
Target Start/End: Complemental strand, 17096432 - 17096252
Alignment:
Q  501 ttctcttcttctcaaaccttaaccgtcggccatttcttcttattgtctattgaagaagggtgatttagggtcaattttgaaccaa-agtca-ccctccga 598  Q
    |||||||||||||||||| ||   |||  |||||||||||| |||||      ||| ||||||||||||||||||||||| |||| | ||| |||||| |    
T  17096432 ttctcttcttctcaaaccctagttgtcacccatttcttcttcttgtc------agaggggtgatttagggtcaattttgacccaataatcacccctccca 17096339  T
Q  599 ---gttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtct 683  Q
       ||| ||||||||||||||| |||| ||||| |||||| ||  ||||||  |||| ||||||||| |||||||||||| |||||||    
T  17096338 gttgttttttttccttctatcctaattgaataagtgattt-cacatattttctgtttcctttcgtttgtttttgtgattttgtcgtct 17096252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 558 - 681
Target Start/End: Complemental strand, 32347854 - 32347729
Alignment:
Q  558 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttattttt-ccttctatccaaattaaataattgatttccatgtattttaagttttc 654  Q
    ||||||||||||||||| ||||| |||||  |||||| ||||| || ||||| |||||||||| |||| ||||| ||||||| |  ||||||  |||||     
T  32347854 gggtgatttagggtcaactttgacccaaaaatcacccctccgacttgttttttccttctatcctaattgaataagtgatttc-acatattttctgtttta 32347756  T
Q  655 tttcgtttatttttgtgatttcgtcgt 681  Q
    |||||||| ||||||||||||||||||    
T  32347755 tttcgtttgtttttgtgatttcgtcgt 32347729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 558 - 684
Target Start/End: Original strand, 27241046 - 27241173
Alignment:
Q  558 gggtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttct 655  Q
    |||||||||| | |||||||||| |||||  |||||| || || || ||||||||| ||||| |||| ||||| ||||||| |  ||||||  |||||||    
T  27241046 gggtgatttatgatcaattttgacccaaaaatcacccctctgaattgtttttccttttatcctaattgaataagtgatttc-acatattttctgttttct 27241144  T
Q  656 ttcgtttatttttgtgatttcgtcgtctt 684  Q
    ||||||| ||||||| |||||||||||||    
T  27241145 ttcgtttgtttttgtaatttcgtcgtctt 27241173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 604 - 683
Target Start/End: Original strand, 3740387 - 3740465
Alignment:
Q  604 ttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtct 683  Q
    |||||||||||||| |||| ||||| ||||||| |  ||||||  |||||||||||||| ||| ||||||||||||||||    
T  3740387 ttttccttctatcctaattgaataagtgatttc-acatattttctgttttctttcgtttgtttgtgtgatttcgtcgtct 3740465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 594 - 683
Target Start/End: Original strand, 17687225 - 17687313
Alignment:
Q  594 tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtct 683  Q
    |||||||| ||||||||||||||  |||| ||||| | ||||| |  |||||| |||||||||| |||| ||||||||||||||| ||||    
T  17687225 tccgagttgtttttccttctatcttaattgaataagttatttc-acatattttcagttttcttttgtttgtttttgtgatttcgttgtct 17687313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 561 - 684
Target Start/End: Original strand, 34431045 - 34431169
Alignment:
Q  561 tgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctttc 658  Q
    |||||||||||||||||||| |||||  |||||| | ||| || ||||| |||||||   |||| ||||| ||||||| |  ||||||  ||||||||||    
T  34431045 tgatttagggtcaattttgacccaaaaatcacccattcgaattgttttttcttctattttaattgaataagtgatttc-acatattttctgttttctttc 34431143  T
Q  659 gtttatttttgtgatttcgtcgtctt 684  Q
    ||||  ||||||||||||||||||||    
T  34431144 gtttgattttgtgatttcgtcgtctt 34431169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 558 - 678
Target Start/End: Complemental strand, 39531540 - 39531422
Alignment:
Q  558 gggtgatttagggtcaattttgaaccaaagtca-ccctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctt 656  Q
    |||||||||| |||||||||||| ||||| ||| |||||||||||  |||||||||||||  |||| ||||| |||||| ||  || |||  ||||||||    
T  39531540 gggtgatttaaggtcaattttgacccaaaatcatccctccgagtt-gttttccttctatcgtaattgaataagtgattt-cacata-tttctgttttctt 39531444  T
Q  657 tcgtttatttttgtgatttcgt 678  Q
    | |||| |||||||||||||||    
T  39531443 ttgtttgtttttgtgatttcgt 39531422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 558 - 684
Target Start/End: Original strand, 20483168 - 20483295
Alignment:
Q  558 gggtgatttagggtcaattttgaaccaaag-tcaccctccgagttatttttccttctatccaaatta-aataattgatttccatgtattttaagttttct 655  Q
    |||||||||||| |||||||||| |||||  ||||||||| | || ||||||||| ||| | ||||  ||||| ||||||| |  ||||||  ||||| |    
T  20483168 gggtgatttaggatcaattttgacccaaaaatcaccctccaaattgtttttccttttattctaatttgaataagtgatttc-acatattttctgttttgt 20483266  T
Q  656 ttcgtttatttttgtgatttcgtcgtctt 684  Q
    || |||| |||||||||||||||||||||    
T  20483267 tttgtttgtttttgtgatttcgtcgtctt 20483295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 603 - 683
Target Start/End: Complemental strand, 23882208 - 23882129
Alignment:
Q  603 tttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtct 683  Q
    |||||| ||||||||||||| ||||| ||||||  |  |||||||  |||||| |||||| ||||||||||||||||||||    
T  23882208 tttttctttctatccaaattgaataagtgatttg-acatattttatattttctatcgtttgtttttgtgatttcgtcgtct 23882129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 604 - 683
Target Start/End: Original strand, 12891706 - 12891784
Alignment:
Q  604 ttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtct 683  Q
    |||||||| ||||| |||| ||||| ||||||| |  ||||||  |||||||||||||| ||||||||||||||| ||||    
T  12891706 ttttccttttatcctaattgaataagtgatttc-acatattttctgttttctttcgtttgtttttgtgatttcgttgtct 12891784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 561 - 613
Target Start/End: Complemental strand, 11824970 - 11824917
Alignment:
Q  561 tgatttagggtcaattttgaaccaaagtca-ccctccgagttatttttccttct 613  Q
    ||||||| |||||||||||| ||||| ||| |||||||| ||||||||||||||    
T  11824970 tgatttaaggtcaattttgatccaaaatcatccctccgaattatttttccttct 11824917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 598 - 683
Target Start/End: Original strand, 18653806 - 18653890
Alignment:
Q  598 agttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtct 683  Q
    |||| ||||| ||| ||||| |||| ||||| |||||||  | ||||||  | |||||||||||| ||||||||||||||||||||    
T  18653806 agttgttttttcttatatcctaattgaataagtgatttcg-tatattttctgatttctttcgtttgtttttgtgatttcgtcgtct 18653890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1379 (Bit Score: 51; Significance: 8e-20; HSPs: 2)
Name: scaffold1379
Description:

Target: scaffold1379; HSP #1
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 491 - 683
Target Start/End: Complemental strand, 1292 - 1099
Alignment:
Q  491 tttctctcgcttctcttcttctcaaaccttaaccgtcggccatttcttcttattgtctattgaagaagggtgatttagggtcaattttgaaccaaag-tc 589  Q
    |||||||| ||||| | | ||||||||| || |||||| || ||||||||| || | | |   ||| |||||||||| |||||||||||| |||||  ||    
T  1292 tttctctctcttctatccatctcaaaccctagccgtcgcccctttcttctttttctttttgtcagaggggtgatttaaggtcaattttgacccaaaaatc 1193  T
Q  590 accc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtct 683  Q
    |||| | ||| || |||||||||||| || |||| ||||| ||||||| |  |||||| ||||||||||||||| ||||||||||||||||||||    
T  1192 acccctgcgaattgtttttccttctaccctaattgaataagtgatttc-acatattttcagttttctttcgtttgtttttgtgatttcgtcgtct 1099  T

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Target: scaffold1379; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 603 - 683
Target Start/End: Original strand, 4 - 83
Alignment:
Q  603 tttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtct 683  Q
    ||||||||||||||  |||| ||||| ||||||| |  ||||||  ||||||||| |||||||||||||||||||||||||    
T  4 tttttccttctatcttaattgaataagtgatttc-acatattttttgttttcttttgtttatttttgtgatttcgtcgtct 83  T

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Target: scaffold0294 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 554 - 684
Target Start/End: Complemental strand, 4209 - 4079
Alignment:
Q  554 agaagggtgatttagggtcaattttga-accaaagtcac-cctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagtt 651  Q
    |||||| |||||||||||||||||||| || ||| |||| |||  ||||| | || |||||||||| |||||||||| ||||||| |  ||||||| |||    
T  4209 agaaggctgatttagggtcaattttgacacaaaaatcactcctttgagttgtctt-ccttctatcctaattaaataagtgatttc-acatattttatgtt 4112  T
Q  652 ttctttcgtttatttttgtgatttcgtcgtctt 684  Q
    ||||||||||| |||||||||||||||||||||    
T  4111 ttctttcgtttgtttttgtgatttcgtcgtctt 4079  T

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Target: scaffold0536 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: scaffold0536
Description:

Target: scaffold0536; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 558 - 683
Target Start/End: Original strand, 2882 - 3010
Alignment:
Q  558 gggtgatttagggtcaattttgaaccaa-agtca-ccctccgagt--tatttttccttctatccaaattaaataattgatttccatgtattttaagtttt 653  Q
    ||||||||||||||||||||||| |||| | ||| ||||||||||  | ||||||||||||||| |||| ||||| |||||| ||  ||||||  ||||     
T  2882 gggtgatttagggtcaattttgacccaataatcacccctccgagttgtttttttccttctatcctaattgaataagtgattt-cacatattttctgtttc 2980  T
Q  654 ctttcgtttatttttgtgatttcgtcgtct 683  Q
    ||||||||| |||||||||||| |||||||    
T  2981 ctttcgtttgtttttgtgattttgtcgtct 3010  T

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Target: scaffold0321 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 1)
Name: scaffold0321
Description:

Target: scaffold0321; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 591 - 683
Target Start/End: Complemental strand, 7228 - 7137
Alignment:
Q  591 ccctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcgtttatttttgtgatttcgtcgtct 683  Q
    |||||||| || ||||||||| ||||| |||| ||||| ||||||| |  ||||||  |||||||||||||| ||||||||||||||||||||    
T  7228 ccctccgaattgtttttccttttatcctaattgaataagtgatttc-acatattttctgttttctttcgtttgtttttgtgatttcgtcgtct 7137  T

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Target: scaffold0056 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0056
Description:

Target: scaffold0056; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 560 - 684
Target Start/End: Original strand, 74148 - 74273
Alignment:
Q  560 gtgatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttcttt 657  Q
    |||||||||  |||||||||| |||||  |||||| ||||| || ||||||||||||||| |||| ||||| ||||||| |  ||||||  |||||||||    
T  74148 gtgatttagaatcaattttgacccaaaaatcacccatccgaattgtttttccttctatcctaattgaataagtgatttc-acatattttctgttttcttt 74246  T
Q  658 cgtttatttttgtgatttcgtcgtctt 684  Q
    ||||| ||||||||||||  |||||||    
T  74247 cgtttgtttttgtgattttttcgtctt 74273  T

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Target: scaffold0432 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: scaffold0432
Description:

Target: scaffold0432; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 558 - 676
Target Start/End: Complemental strand, 2555 - 2438
Alignment:
Q  558 gggtgatttagggtcaattttgaaccaaag-tcaccctccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctt 656  Q
    |||||||||||||||| |||||| |||||  |||||||| ||||| ||||||||||||||  |||  ||||| |||||| ||  ||||||  ||||||||    
T  2555 gggtgatttagggtcatttttgacccaaaaatcaccctctgagttgtttttccttctatcataatcgaataagtgattt-cacatattttctgttttctt 2457  T
Q  657 tcgtttatttttgtgatttc 676  Q
    ||||||  ||||||||||||    
T  2456 tcgttt-gttttgtgatttc 2438  T

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Target: scaffold1350 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold1350
Description:

Target: scaffold1350; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 641 - 683
Target Start/End: Original strand, 1640 - 1682
Alignment:
Q  641 tattttaagttttctttcgtttatttttgtgatttcgtcgtct 683  Q
    ||||||| |||||||||||||| ||||||||||||||||||||    
T  1640 tattttatgttttctttcgtttgtttttgtgatttcgtcgtct 1682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 562 - 683
Target Start/End: Complemental strand, 404393 - 404271
Alignment:
Q  562 gatttagggtcaattttgaaccaaag-tcaccc-tccgagttatttttccttctatccaaattaaataattgatttccatgtattttaagttttctttcg 659  Q
    |||||| |||||||||||| |||||  |||||| ||||| |  |||||| | |||||| |||| ||||| ||||||| |  ||||||  |||||||| ||    
T  404393 gatttaaggtcaattttgatccaaaaatcacccatccgaatagtttttcttgctatcctaattgaataagtgatttc-acatattttctgttttcttccg 404295  T
Q  660 tttatttttgtgatttcgtcgtct 683  Q
    ||| ||||||||||||||||||||    
T  404294 tttgtttttgtgatttcgtcgtct 404271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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