View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11433_high_31 (Length: 253)
Name: NF11433_high_31
Description: NF11433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11433_high_31 |
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Alignment Details
Target: chr3 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 52544096 - 52544325
Alignment:
| Q |
1 |
ttagtcatttgatggatcgttcatcaatgcactttactagatgtcccgtttataggattgttgataaatgctttgtgtctatcatacagtttgtgtataa |
100 |
Q |
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| T |
52544096 |
ttagtcatttgatggatcgttcatcaatgcactttactagatgtccc----ataggattgttgataaatgctttgtgtctatcatacagtttgtgtataa |
52544191 |
T |
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| Q |
101 |
attcagttggctctgattgtttatggtggtcttgacgcaattgattgcttgtagaaatacttcatcatcagttttttattttaatgctagccttttatgc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
52544192 |
attcagttggctctgattgtttatggtggtcttgactcaattgattgcttgtagaaatacttcatcatcagtttttgattttaatgctagccttttatgc |
52544291 |
T |
|
| Q |
201 |
tgaactaagcctatcgtgcatggtacatggttgg |
234 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
52544292 |
tgaactaagcctatcgtgcatggtacatggttgg |
52544325 |
T |
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