View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11433_high_33 (Length: 253)
Name: NF11433_high_33
Description: NF11433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11433_high_33 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 165; Significance: 2e-88; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 7608733 - 7608489
Alignment:
| Q |
1 |
ttaaatatcataaatgtaggtcagtttaattggtagagagttgaatttttcctcccaagaatgtgaattcaactcttaatactaacgtggccacatcttt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||| |||| |||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
7608733 |
ttaaatatcataaatgtaggtcagtttaattggtaaagagttgaattttttctcctaagaatgtgagttcaactcttaatactaacgtggccacatcttt |
7608634 |
T |
|
| Q |
101 |
-------ggtgggtgatctctaagtatctctgtaaacattatttaaatcatgagacccaccat---gatcctggcgaactcttaggactcaacaatgaaa |
190 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |||| ||||||||||||||||||||||||||||| |
|
|
| T |
7608633 |
aatctttggtgggtgatctctaagtatctctataaacattatttaaatcatgagaaccaccatattgatcttggcgaactcttaggactcaacaatgaaa |
7608534 |
T |
|
| Q |
191 |
gttgacttatttaataagaagttggctcaccctcaaatatactcc |
235 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| ||| ||||||| |
|
|
| T |
7608533 |
gttgacttatttaataagaagttgactcaccctaaaacatactcc |
7608489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 7608846 - 7608761
Alignment:
| Q |
1 |
ttaaatatcataaatgtaggtcagtttaattggtagagagttgaattttt-cctcccaagaatgtgaattcaactcttaatactaa |
85 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| |||||||||||||| |||||||| || | | || ||||||||||||||| |
|
|
| T |
7608846 |
ttaaatatcataaatgtaggtcaggttaattggtaaagagttgaatttttccctcccaaaaactttagtttaactcttaatactaa |
7608761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University