View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11433_high_4 (Length: 640)
Name: NF11433_high_4
Description: NF11433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11433_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 371; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 14 - 499
Target Start/End: Original strand, 25715159 - 25715642
Alignment:
| Q |
14 |
aggatttgatcaagaactatggtaggaagggaatcattacttttggtgatggtgatgtatttgagaaactgaaaaatagtttgaatttcaagtcattttt |
113 |
Q |
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|||||||||||||||||||||||| |||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| |
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| T |
25715159 |
aggatttgatcaagaactatggtatcaagggaattattacttttggtgatggtgatgcatttgagaaactgaaaaatagtttgaatttcatgtcattttt |
25715258 |
T |
|
| Q |
114 |
tgaagggaatttggtgcattataaggccttattggaatccattgagtcacaattttcagaaaaattctcagaagcaagaattacatgtgaagtgctattt |
213 |
Q |
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||||||||||||||||||||||||||| || |||||||| |||||||||||||||||| |||||||||||||||||||||| ||||||||||| | ||| |
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| T |
25715259 |
tgaagggaatttggtgcattataaggctttgttggaatcaattgagtcacaattttcaacaaaattctcagaagcaagaattgcatgtgaagtgttgttt |
25715358 |
T |
|
| Q |
214 |
gtagcaccttgtatatcttctcttgattggttgcaaacatgggaagagatgaaaagtgatggttatgttaaagatgagattaggttagaaggtggaagat |
313 |
Q |
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|| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| |||| |||||||||| |
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| T |
25715359 |
gtggcaccttgtatatcttctcttgattggttacaaacatgggaagagatgaaaagtgatggatatgttaaagatgagattagcatagatggtggaagat |
25715458 |
T |
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| Q |
314 |
tgagcaaaaatgttttgatggaagtcagagaaatgttgagaggaagtgatagttcatatcaagcaagaattgaaggagaaaatgagaatcaacttgtttt |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || |
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| T |
25715459 |
tgagcaaaaatgttttgatggaagtcagagaaatgttgagaggaagtgatagttcatatcaagctagaattgaaggagaaaatgagaatcaacttgtgtt |
25715558 |
T |
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| Q |
414 |
ggaatggaaaggaagtcaactattaagattttccatttggaaaaattaaagtgtagaaaattaggagtgaacagtagttttttagt |
499 |
Q |
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| T |
25715559 |
ggaatggaaaggaagtcaactattaagattttctatttggaaaaatt--agtctaggaaattaggagtgaacattacttttttagt |
25715642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 14 - 499
Target Start/End: Original strand, 25735389 - 25735873
Alignment:
| Q |
14 |
aggatttgatcaagaactatggtaggaagggaatcattacttttggtgatggtgatgtatttgagaaactgaaaaatagtttgaatttcaagtcattttt |
113 |
Q |
| |
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||||||||||||||||||||||||| ||| |||| |||||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||| ||||| |
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| T |
25735389 |
aggatttgatcaagaactatggtagcaagagaattattacttttggtgatggtgatgcatttgagaaactgaaaaatagtt-gaatttcaggtccttttt |
25735487 |
T |
|
| Q |
114 |
tgaagggaatttggtgcattataaggccttattggaatccattgagtcacaattttcagaaaaattctcagaagcaagaattacatgtgaagtgctattt |
213 |
Q |
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|||||||||||||||||||||||| || || |||||||| ||||||| |||||||| |||||||||||||||||||||| |||||||| | || ||| |
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| T |
25735488 |
tgaagggaatttggtgcattataaagctttgttggaatcaattgagttgcaattttccacaaaattctcagaagcaagaattgcatgtgaaattctgttt |
25735587 |
T |
|
| Q |
214 |
gtagcaccttgtatatcttctcttgattggttgcaaacatgggaagagatgaaaagtgatggttatgttaaagatgagattaggttagaaggtggaagat |
313 |
Q |
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|| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| | |||||||||||||||||| |||||| |||||||| |
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| T |
25735588 |
gtggcaccttgtatatcttctcttgattggttacaaacatgggaagagataaaaagtgatgggtgtgttaaagatgagattagcatagaagatggaagat |
25735687 |
T |
|
| Q |
314 |
tgagcaaaaatgttttgatg--gaagtcagagaaatgttgagaggaagtgatagttcatatcaagcaagaattgaaggagaaaatgagaatcaacttgtt |
411 |
Q |
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||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25735688 |
tgattaaaaatgttttgatggagaagtcagagaaatgttgagaggaagtgatagttcatatcaagcaagaattgaaggagaaaatgagaatcaacttgtt |
25735787 |
T |
|
| Q |
412 |
ttggaatggaaaggaagtcaactattaagattttccatttggaaaaattaaagtgtagaaaattaggagtgaacagtagttttttagt |
499 |
Q |
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| T |
25735788 |
ttggaatggaaaggaagtcaactgttaagattttcaatttggaaaaatt--agtctaggaaattaggagttaacagtacttttttagt |
25735873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 14 - 195
Target Start/End: Original strand, 25743509 - 25743689
Alignment:
| Q |
14 |
aggatttgatcaagaactatggtaggaagggaatcattacttttggtgatggtgatgtatttgagaaactgaaaaatagtttgaatttcaagtcattttt |
113 |
Q |
| |
|
||||||||||||||||||||||||| |||||| | |||||||||||||||||||||| ||||||||||||||||||||| |||||||||| ||| ||||| |
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| T |
25743509 |
aggatttgatcaagaactatggtagcaagggatttattacttttggtgatggtgatgcatttgagaaactgaaaaatag-ttgaatttcaggtccttttt |
25743607 |
T |
|
| Q |
114 |
tgaagggaatttggtgcattataaggccttattggaatccattgagtcacaattttcagaaaaattctcagaagcaagaatt |
195 |
Q |
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||||||||||||||||||||||| || || |||||||| |||||||| |||||||| |||||||||||||||||||||| |
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| T |
25743608 |
tgaagggaatttggtgcattatagagctttgttggaatcaattgagtcgcaattttccacaaaattctcagaagcaagaatt |
25743689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 501 - 580
Target Start/End: Original strand, 25715688 - 25715767
Alignment:
| Q |
501 |
tagttattataatttgaattgtataaagattctttatgtaaccacaaaatatgtaaatctgaaacatattttaatgataa |
580 |
Q |
| |
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||||||||||||||||| |||||||||||||||||||| | ||||||| ||||||||||||||||||||||||||||||| |
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| T |
25715688 |
tagttattataatttgatttgtataaagattctttatgcatccacaaagtatgtaaatctgaaacatattttaatgataa |
25715767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 508 - 588
Target Start/End: Original strand, 25735924 - 25736004
Alignment:
| Q |
508 |
tataatttgaattgtataaagattctttatgtaaccacaaaatatgtaaatctgaaacatattttaatgataactttatgt |
588 |
Q |
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|||||||||| || ||||||||||||||||| | ||||||| ||||||||||||||| ||||||||||||||||||||||| |
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| T |
25735924 |
tataatttgatttttataaagattctttatgcatccacaaagtatgtaaatctgaaatatattttaatgataactttatgt |
25736004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 588 - 622
Target Start/End: Original strand, 25736067 - 25736101
Alignment:
| Q |
588 |
taaagtcacttcttgttactagagaccttacaagt |
622 |
Q |
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| T |
25736067 |
taaagtcacttcttgttactagagaccttgcaagt |
25736101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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