View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11433_high_40 (Length: 244)
Name: NF11433_high_40
Description: NF11433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11433_high_40 |
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| [»] scaffold0187 (5 HSPs) |
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Alignment Details
Target: scaffold0187 (Bit Score: 184; Significance: 1e-99; HSPs: 5)
Name: scaffold0187
Description:
Target: scaffold0187; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 26 - 221
Target Start/End: Complemental strand, 8896 - 8701
Alignment:
| Q |
26 |
aaggaatagtcaatgattgaatgatattaatacactcattcaattatggtggctgatggatcatggaaaatacataaaatcagaaagattattggtatat |
125 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8896 |
aaggaatagtcaatgattaaatgatattaatacactcattcaattatggtggctgatggatcatggaaaatacataaaatcagaaagattattggtatat |
8797 |
T |
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| Q |
126 |
atagtcttttacaaagaacattattggatgagtgagaaataaaatagagtagccttagcttaaacattctgcattaaacccacctttataccttta |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
8796 |
atagtcttttacaaagaacattattggatgagtgagaattaaaatagagtagccttagcttaaacattctgcattagacccacctttataccttta |
8701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0187; HSP #2
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 26 - 221
Target Start/End: Complemental strand, 19224 - 19029
Alignment:
| Q |
26 |
aaggaatagtcaatgattgaatgatattaatacactcattcaattatggtggctgatggatcatggaaaatacataaaatcagaaagattattggtatat |
125 |
Q |
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| T |
19224 |
aaggaatagtcaatgattaaatgatattaatacactcattcaattatggtggctgatggatcatggaaaatacataaaatcagaaagattattggtatat |
19125 |
T |
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| Q |
126 |
atagtcttttacaaagaacattattggatgagtgagaaataaaatagagtagccttagcttaaacattctgcattaaacccacctttataccttta |
221 |
Q |
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| T |
19124 |
atagtcttttacaaagaacattattggatgagtgagaattaaaatagagtagccttagcttaaacattctgcattagacccacctttataccttta |
19029 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0187; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 61 - 215
Target Start/End: Complemental strand, 1670 - 1511
Alignment:
| Q |
61 |
tcattcaattatggtggctgatggatcatggaaaatacataaaatcagaaagattattggtatatata-----gtcttttacaaagaacattattggatg |
155 |
Q |
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| T |
1670 |
tcattcaatcatggtggatgatggatcatcgataatatataaaatcagaaagattactggtatatataatatagtcttttacaaagaacattattggatg |
1571 |
T |
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| Q |
156 |
agtgagaaataaaatagagtagccttagcttaaacattctgcattaaacccacctttata |
215 |
Q |
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| T |
1570 |
agtgagaaataaaatagagtagccttagcttaaacattatgcattaaacccacctttata |
1511 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0187; HSP #4
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 90 - 221
Target Start/End: Complemental strand, 30070 - 29939
Alignment:
| Q |
90 |
ggaaaatacataaaatcagaaagattattggtatatatagtcttttacaaagaacattattggatgagtgagaaataaaatagagtagccttagcttaaa |
189 |
Q |
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|||| |||| ||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
30070 |
ggaacatacgtaaaatcagaaagattaccggtatatatagtcttttacaaggaacattattggatgagtgagaaataaaatagtgtagccttagcttaaa |
29971 |
T |
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| Q |
190 |
cattctgcattaaacccacctttataccttta |
221 |
Q |
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| T |
29970 |
cattctgcattagtcccacctttataccttta |
29939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0187; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 25 - 76
Target Start/End: Complemental strand, 30865 - 30814
Alignment:
| Q |
25 |
gaaggaatagtcaatgattgaatgatattaatacactcattcaattatggtg |
76 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
30865 |
gaaggaatagtcaatggctgaatgatattaatacactcattcaattatggtg |
30814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 120; Significance: 2e-61; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 66 - 229
Target Start/End: Original strand, 37865800 - 37865962
Alignment:
| Q |
66 |
caattatggtggctgatggatcatggaaaatacataaaatcagaaagattattggtatatatagtcttttacaaagaacattattggatgagtgagaaat |
165 |
Q |
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||||||| ||| ||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
37865800 |
caattatagtgaatgatggatcatcgatcatacataaaatcagaaagattattggtatatatagtcttttacaaagaacattattggatgagtgagaatt |
37865899 |
T |
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| Q |
166 |
aaaatagagtagccttagcttaaacattctgcattaaacccacctttatacctttatatctgtg |
229 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||| ||||||| ||||||||||||| |
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| T |
37865900 |
aaaatagagtagccttagcttagacattctgcattaaacccatctttata-ctttatatctgtg |
37865962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 90 - 221
Target Start/End: Original strand, 37909007 - 37909138
Alignment:
| Q |
90 |
ggaaaatacataaaatcagaaagattattggtatatatagtcttttacaaagaacattattggatgagtgagaaataaaatagagtagccttagcttaaa |
189 |
Q |
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|||| |||| ||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
37909007 |
ggaacatacgtaaaatcagaaagattaccggtatatatagtcttttacaaggaacattattggatgagtgagaaataaaatagtgtagccttagcttaaa |
37909106 |
T |
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| Q |
190 |
cattctgcattaaacccacctttataccttta |
221 |
Q |
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| T |
37909107 |
cattctgcattagtcccacctttataccttta |
37909138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 61 - 229
Target Start/End: Original strand, 37879709 - 37879882
Alignment:
| Q |
61 |
tcattcaattatggtggctgatggatcatggaaa-----atacataaaatcagaaagattattggtatatatagtcttttacaaagaacattattggatg |
155 |
Q |
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||||||||||||||||| ||| ||||||||||| ||||||||| ||| ||||||| |||||| |||||||||||||||||||| ||| ||| |
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| T |
37879709 |
tcattcaattatggtggatgacggatcatggaagtgaacatacataaactcaaaaagattgcaagtatatgtagtcttttacaaagaacatacttgaatg |
37879808 |
T |
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| Q |
156 |
agtgagaaataaaatagagtagccttagcttaaacattctgcattaaacccacctttatacctttatatctgtg |
229 |
Q |
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| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37879809 |
aatgagaaataaaatagagtagcattagcttaaacattctgcattaaacccacctttatacctttatatctgtg |
37879882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 134 - 225
Target Start/End: Original strand, 37916240 - 37916331
Alignment:
| Q |
134 |
ttacaaagaacattattggatgagtgagaaataaaatagagtagccttagcttaaacattctgcattaaacccacctttatacctttatatc |
225 |
Q |
| |
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||||| ||||||| |||| |||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
37916240 |
ttacatagaacataattgaatgaatgagaaataaaatagagtagccttagcctaaacattctgcattaaacccacctttatacctttatatc |
37916331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 25 - 76
Target Start/End: Original strand, 37908212 - 37908263
Alignment:
| Q |
25 |
gaaggaatagtcaatgattgaatgatattaatacactcattcaattatggtg |
76 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
37908212 |
gaaggaatagtcaatggctgaatgatattaatacactcattcaattatggtg |
37908263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 75
Target Start/End: Original strand, 37916169 - 37916217
Alignment:
| Q |
26 |
aaggaatagtcaatgattgaatgatattaatacactcattcaattatggt |
75 |
Q |
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|||||||||||||||| | ||||||||| || |||||||||||||||||| |
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| T |
37916169 |
aaggaatagtcaatgactaaatgatatt-attcactcattcaattatggt |
37916217 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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