View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11433_high_7 (Length: 556)
Name: NF11433_high_7
Description: NF11433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11433_high_7 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 464; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 464; E-Value: 0
Query Start/End: Original strand, 17 - 556
Target Start/End: Original strand, 49723379 - 49723919
Alignment:
| Q |
17 |
caataccctcactgtggcatactggccataagtggttgtgatcnnnnnnn-tacatctgctcccaaaagcatccaactaagaaagatgccatcctaacat |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| |||||||||||||| |||| |
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| T |
49723379 |
caataccctcactgtggcatactggccataagtggttgtgatcaaaaaaaatacatctgctcccaatagcatccaactaggaaagatgccatccaaacag |
49723478 |
T |
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| Q |
116 |
tctttaatagttacatacgtggaaggtaatatcatcacggtctcagatgaaacacagcggaagtatttgctatccaaaaaatgccaagcctttcacaatt |
215 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
49723479 |
tctttaatagttacatacgtggaaggtaataccatcacggtctcagatgaaacacagcagaagtatttgctatccaaaaaatgccaagcctttcacaatt |
49723578 |
T |
|
| Q |
216 |
atcctgttcctcgcactactcctttgggttctttctacatcaaatttaatataactatgttcaaatgcaatcgctcccttaaggtcacccctccaaaatc |
315 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49723579 |
atcctgttcctcccactactcctttgggttctttctacatcaaatttaatataactatgttcaaatgcaatcgctcccttaaggtcacccctccaaaatc |
49723678 |
T |
|
| Q |
316 |
atttcaaaactacgcaaactgttccggttatgatatctactattaccttcaaaatattgtgagagcccctcctttcaaagtgccaaactctttagcacag |
415 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | ||||||||||||||||||||||||||||||||| |
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| T |
49723679 |
atttcaaaactacgcaaactgttccggttatgatatctactatgaccttcaaaatattgtgagacctcctcctttcaaagtgccaaactctttagcacag |
49723778 |
T |
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| Q |
416 |
tgtacacagtgtcaggctgcagtaggagacatgcccaatgatgacccctttgagtttctatctcctcagatctccattgtagtacaattatctgatgatt |
515 |
Q |
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| T |
49723779 |
tgtacacagtgtcaggctgcagtaagagacatgcccaatgatgatccctttgagtttctatctcctcagatctccattgtagtacaattatctgatgatt |
49723878 |
T |
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| Q |
516 |
gtaaccagtgtcttcatcatcaagggggacgatgccgactt |
556 |
Q |
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| T |
49723879 |
gtaaccagtgtcttcatcatcaagggggacgatgccgactt |
49723919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 17 - 556
Target Start/End: Original strand, 49673475 - 49674014
Alignment:
| Q |
17 |
caataccctcactgtggcatactggccataagtggttgtgatcnnnnnnntacatctgctcccaaaagcatccaactaagaaagatgccatcctaacatt |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||| |||| |
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| T |
49673475 |
caataccctcactgtggcatactggccataagtggttgtgataaaaaaaatacatctgctcccaaaagcatccaactaggaaagatgccatccaaacagc |
49673574 |
T |
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| Q |
117 |
ctttaatagttacatacgtggaaggtaatatcatcacggtctcagatgaaacacagcggaagtatttgctatccaaaaaatgccaagcctttcacaatta |
216 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49673575 |
ctttaatagttacatacgtggaaggtaataccatcacggtctcagataaaacacagcggaagtatttgctatccaaaaaatgccaagcctttcacaatta |
49673674 |
T |
|
| Q |
217 |
tcctgttcctcgcactactcctttgggttctttctacatcaaatttaatataactatgttcaaatgcaatcgctcccttaaggtcacccctccaaaatca |
316 |
Q |
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||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49673675 |
tcctgttcctcccactactcctttgggttctttctacctcaaatttaatataactatgttcaaatgcaatcgctcccttaaggtcacccctccaaaatca |
49673774 |
T |
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| Q |
317 |
tttcaaaactacgcaaactgttccggttatgatatctactattaccttcaaaatattgtgagagcccctcctttcaaagtgccaaactctttagcacagt |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | |||||||||||||||||||||||||||||||||| |
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| T |
49673775 |
tttcaaaactacgcaaactgttccggttatgatatctactatgaccttcaaaatattgtgagacctcctcctttcaaagtgccaaactctttagcacagt |
49673874 |
T |
|
| Q |
417 |
gtacacagtgtcaggctgcagtaggagacatgcccaatgatgacccctttgagtttctatctcctcagatctccattgtagtacaattatctgatgattg |
516 |
Q |
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||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49673875 |
gtacacagtgtcaggctgcggtaagagacatgcccaatgatgacccctttgagtttctatctcctcagatctccattgtagtacaattatctgatgattg |
49673974 |
T |
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| Q |
517 |
taaccagtgtcttcatcatcaagggggacgatgccgactt |
556 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
49673975 |
taaccagtgtcttcatcatcaagggggacgatgccgactt |
49674014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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