View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11433_high_9 (Length: 529)
Name: NF11433_high_9
Description: NF11433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11433_high_9 |
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Alignment Details
Target: chr6 (Bit Score: 452; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 16 - 512
Target Start/End: Original strand, 1711503 - 1711998
Alignment:
| Q |
16 |
acatcagagtgagacaattaattatgttatctgtttcggagacnnnnnnnnataattgaattaatatatgatatatttctccactacatattcttaatta |
115 |
Q |
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| T |
1711503 |
acatcagagtgagacaattaattatgttatccgttttggagactttttta-ataattgaattaatatatgatatatttctccactacatattcttaatta |
1711601 |
T |
|
| Q |
116 |
ataaatttccatttaccaactcaagtttatatttgattttactaactcatgtatgatcaagcaaaagtgctaggaactgtgaactttattatgttggaga |
215 |
Q |
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| T |
1711602 |
ataaatttccatttaccaactcaagtttatatttgattttactaactcatgtatgatcaagcaaaagtgctaggaactgtgaactttattatgttggaga |
1711701 |
T |
|
| Q |
216 |
tgtaattatatcggatttggactttatttgctttggtagttactttcattgattatagatggagattaaggaagtaacgtgttaaggttgtatttgctct |
315 |
Q |
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| T |
1711702 |
tgtaattatatcggatttggactttatttgctttggtagttactttcattgattatagatggagattaaggaagcaacgtgttaaggttgtatttgctct |
1711801 |
T |
|
| Q |
316 |
atctaaaataataatagtattaagacaataaaagtccaaatagatggaacaaaaagtacgtgcgatcaatatcatgcatgtgtccatattctagaaagta |
415 |
Q |
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| T |
1711802 |
atctaaaataataatagtattaagacaataaaagtccaaatagatggaacaaaaagtacgtgcgatcaatatcatgcatgtgtccatattctagaaagta |
1711901 |
T |
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| Q |
416 |
tatcgtaagtttactatagagctagtgtttctatcaaatcaatttgggaattgctgatataactagatatgaacacagcaatatgattaacaaaatt |
512 |
Q |
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| T |
1711902 |
tatcgtaagtttactatagagctagtgtttctatcaaatcaatttgggaattgccgatataactagatatgaacacagcaatatgattaacaaaatt |
1711998 |
T |
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