View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11433_low_11 (Length: 522)
Name: NF11433_low_11
Description: NF11433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11433_low_11 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 486; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 486; E-Value: 0
Query Start/End: Original strand, 9 - 506
Target Start/End: Complemental strand, 6361263 - 6360766
Alignment:
| Q |
9 |
aattaggtgtccaaaatttgaaagagtggttacctgatgcatagggctgcttgctaggactccatggttgcaatccatttttacagtatgtctccatttg |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6361263 |
aattaggtgtccaaaatttgaaagagtggttacctgatgcatagggctgcttgctaggactccatggttgcaatccatttttacagtatgtctccatttg |
6361164 |
T |
|
| Q |
109 |
caccttcaatgcattaacatcccaccatttcttccacctagcagttgccattgcttcttccattgtatgaacataaaaaggatgttttgatatagccata |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6361163 |
caccttcaatgcattaacatcccaccatttcttccacctagcagttgccattgcttcttccattgtatgaacataaaaaggatgttttgatatagccata |
6361064 |
T |
|
| Q |
209 |
tctacattctcatttataacaagtgaatgaatcaacaacaaaggatcaaccattagttgcaactttgcatctatccaaatactgaattgtgaatttggaa |
308 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6361063 |
tctacattctcctttataacaagtgaatgaatcaacaacaaaggatcaaccatgagttgcaactttgcatctatccaaatactgaattgtgaatttggaa |
6360964 |
T |
|
| Q |
309 |
atagtctatggactaaatattttggtataatcccattcattgctgggctctgatacaaatcatcttttgcaaccttcacaagcctccacacacctatctt |
408 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6360963 |
atagtctatggattaaatattttggtataatcccattcattgctgggctctgatacaaatcatcttttgcaaccttcacaagcctccacacacctatctt |
6360864 |
T |
|
| Q |
409 |
gtattcttgggattttattgaaatcattccatgatgttctaaacctttgagggtaacatcgtccacaaacatgaagaaacacacattttctagtgttt |
506 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6360863 |
gtattcttgggattttattgaaatcattccatgatgttctaaacctttgagggtaacatcgtccacaaacatgaagaaacacacattttctagtgttt |
6360766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 301 - 467
Target Start/End: Original strand, 13033761 - 13033927
Alignment:
| Q |
301 |
atttggaaatagtctatggactaaatattttggtataatcccattcattgctgggctctgatacaaatcatcttttgcaaccttcacaagcctccacaca |
400 |
Q |
| |
|
|||||||||||||||||||| |||||||||| |||||||| |||||| || | |||| |||||||||||||||||||||||||||| |||| ||||| |
|
|
| T |
13033761 |
atttggaaatagtctatggattaaatatttttgtataatcatattcatcacttgattctgttacaaatcatcttttgcaaccttcacaatcctctacaca |
13033860 |
T |
|
| Q |
401 |
cctatcttgtattcttgggattttattgaaatcattccatgatgttctaaacctttgagggtaacat |
467 |
Q |
| |
|
|||||||||| | ||| |||||||||| |||| | |||||| ||||| | ||||||||||||||||| |
|
|
| T |
13033861 |
cctatcttgtttgctttggattttattaaaattactccatggtgttcaagacctttgagggtaacat |
13033927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University