View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11433_low_12 (Length: 496)
Name: NF11433_low_12
Description: NF11433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11433_low_12 |
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| [»] chr6 (1 HSPs) |
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| [»] scaffold0577 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 396; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 16 - 496
Target Start/End: Original strand, 6768941 - 6769421
Alignment:
| Q |
16 |
gacatcagtaaagcttatgaccgtattgggtgggattatctccgagatattatgaccaagatgggtttctctgaccggtgggtgaagtggatcatgttat |
115 |
Q |
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| T |
6768941 |
gacatcagtaaagcttatgaccgtattgagtgggattatctccgagatattatgaccaaaatgggtttctctgaccggtgggtgaagtggatcatgttat |
6769040 |
T |
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| Q |
116 |
gcgtggaaacggtagactattcggttcttgtcaatggagctgcagtaggtcctattgttcccggacagggtttacgtcagggagacctcctgttgcctta |
215 |
Q |
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| T |
6769041 |
gcgtggaataggtagactattcggttcttgtcaatggagctgcagtaggtcctattgttcctggacggggtttacgtcagggagacctcctgtcgcctta |
6769140 |
T |
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| Q |
216 |
tctttccatcttatacgcagaaggattatcagcacttatcaaacgagcagaggggcaaggaattttacatgatgttaagatttgcacagctgcacctatt |
315 |
Q |
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| T |
6769141 |
tctttccatcttatgcgcagaaggattatcagcacttatcaaacgagcagaggggcaaggagttttacatggtgttaagatttgcacagctgcacctatt |
6769240 |
T |
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| Q |
316 |
atttctcacttactctttgctgacgactgttttctcttcttcaaaggttcaacaaatgaagctattgtcatgaaagatattctagcttcctatgaagcgg |
415 |
Q |
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| T |
6769241 |
atttctcacttactctttgctgtcgactgttttctcttcttcaaaggttcaacaaatgaagctattgtcatgaaagatattctagcttcctatgaagcgg |
6769340 |
T |
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| Q |
416 |
aatccaggcaggctattaatctccaaaagtctgagcnnnnnnncagtcgcaatacaccataggaaacaaaaaataatatat |
496 |
Q |
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| T |
6769341 |
catccgggcaggctattaatctccaaaagcctgagatttttttcagtcgcaatacaccagaggaaacaaaaaataatatat |
6769421 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0577 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0577
Description:
Target: scaffold0577; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 298 - 356
Target Start/End: Complemental strand, 4283 - 4225
Alignment:
| Q |
298 |
tgcacagctgcacctattatttctcacttactctttgctgacgactgttttctcttctt |
356 |
Q |
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| T |
4283 |
tgcacagatgcaccaattatttctcaccttctctttgcagacgattgttttcttttctt |
4225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 317 - 362
Target Start/End: Original strand, 14126583 - 14126628
Alignment:
| Q |
317 |
tttctcacttactctttgctgacgactgttttctcttcttcaaagg |
362 |
Q |
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| T |
14126583 |
tttctcacctactctttgctgatgactgttttttgttcttcaaagg |
14126628 |
T |
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