View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11433_low_13 (Length: 469)
Name: NF11433_low_13
Description: NF11433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11433_low_13 |
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| [»] scaffold0013 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 11 - 433
Target Start/End: Complemental strand, 40949251 - 40948812
Alignment:
| Q |
11 |
caaaggaagctgttggtcgttttattgaagcatggaagagagctagcaatgaccaaccagtttgggaaacacttgatttctcaatgttgaaatctgattt |
110 |
Q |
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| T |
40949251 |
caaaggaagctgttggtcgttttattgaagcatggaagagagctagcaatgaccaaccagtttgggaaacacttgatttctcaatgttgaaatctgattt |
40949152 |
T |
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| Q |
111 |
tgtgaaggcctcaattcagccatatgtttgggtccattcccgttctgacagcacgttgtacaatttgctatttcttgcattgaatatcagtcaagggaat |
210 |
Q |
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| T |
40949151 |
tgtaaaggcctcaattcagccatatatttgggtccattcccgttctgacagcactttgtacaatttgctatttcttgcattgaatatcagtcaagggaat |
40949052 |
T |
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| Q |
211 |
atcaagaccttgattttcaattacagcttgtatctcactaatgatcaattaatctacacagctataaggtacgcaattacatataatttcataaaggttt |
310 |
Q |
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| T |
40949051 |
atcaagaccttgattttcaattacagcttgtatctcaccaatgatcaattcatctacacagctataaggtacgtaattacatataatttcataaaggttt |
40948952 |
T |
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| Q |
311 |
gtacatgttaatactatac-----------------aaatataatggaccatttatttttaccattagattaaatatgacttacaaatttatcatggtgc |
393 |
Q |
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| T |
40948951 |
gtacatgttaatactatactatttcaaatttgtctataatataatggaccatttatttttaccattagattaaatatgacttaaaaatttatcatggtgc |
40948852 |
T |
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| Q |
394 |
cgtctacaaacaatccaactctatcatcctcctatcttga |
433 |
Q |
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| T |
40948851 |
cgtctacaaacaatccaactctatcatcctcctatcttga |
40948812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 97; Significance: 2e-47; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 28 - 260
Target Start/End: Original strand, 45653112 - 45653344
Alignment:
| Q |
28 |
cgttttattgaagcatggaagagagctagcaatgaccaaccagtttgggaaacacttgatttctcaatgttgaaatctgattttgtgaaggcctcaattc |
127 |
Q |
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||||||| |||||||| || || |||||||| || |||||| ||||||||||||||||||||||| |||||||||||||| ||||||||| | || | |
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| T |
45653112 |
cgttttactgaagcattgacgaaagctagcactgtccaaccggtttgggaaacacttgatttctccatgttgaaatctgaatttgtgaagactccatctg |
45653211 |
T |
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| Q |
128 |
agccatatgtttgggtccattcccgttctgacagcacgttgtacaatttgctatttcttgcattgaatatcagtcaagggaatatcaagaccttgatttt |
227 |
Q |
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| T |
45653212 |
agccatttgtttgggtcaattctggctctgacaacactttgtacaatttgttgtttggtgcactcaaactcagtcaagggaaaatcaagaccttgatttt |
45653311 |
T |
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| Q |
228 |
caattacagcttgtatctcactaatgatcaatt |
260 |
Q |
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| T |
45653312 |
ccattacaacttgtatctcaccaatgatcaatt |
45653344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: scaffold0013
Description:
Target: scaffold0013; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 71 - 283
Target Start/End: Complemental strand, 40934 - 40722
Alignment:
| Q |
71 |
tttgggaaacacttgatttctcaatgttgaaatctgattttgtgaaggcctcaattcagccatatgtttgggtccattcccgttctgacagcacgttgta |
170 |
Q |
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| T |
40934 |
tttggcaaacacttgatttctccatgttgagatctgattttatcaagagcactgctccgccatatgtttgggtcaattccaacttcgacaacactttata |
40835 |
T |
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| Q |
171 |
caatttgctatttcttgcattgaatatcagtcaagggaatatcaagaccttgattttcaattacagcttgtatctcactaatgatcaattaatctacaca |
270 |
Q |
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| T |
40834 |
caatttgttgtttatttcattgaatcccagccaagggaatatcaagactttgattttccattactacttgtatctcaccaatgatcaattcttgtacaca |
40735 |
T |
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| Q |
271 |
gctataaggtacg |
283 |
Q |
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|||| |||||||| |
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| T |
40734 |
gctaaaaggtacg |
40722 |
T |
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