View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11433_low_17 (Length: 406)

Name: NF11433_low_17
Description: NF11433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11433_low_17
NF11433_low_17
[»] chr6 (9 HSPs)
chr6 (20-392)||(24885581-24885953)
chr6 (120-392)||(24711804-24712075)
chr6 (127-392)||(24731514-24731780)
chr6 (20-55)||(6204223-6204258)
chr6 (20-55)||(11691190-11691225)
chr6 (20-55)||(22304304-22304339)
chr6 (20-55)||(30826566-30826601)
chr6 (20-53)||(3502050-3502083)
chr6 (57-85)||(24712191-24712219)
[»] chr8 (10 HSPs)
chr8 (20-55)||(22444-22479)
chr8 (20-55)||(486681-486716)
chr8 (20-55)||(1055600-1055635)
chr8 (20-55)||(15033713-15033748)
chr8 (20-55)||(23019235-23019270)
chr8 (20-55)||(26662521-26662556)
chr8 (20-55)||(41243032-41243067)
chr8 (20-55)||(42482454-42482489)
chr8 (20-52)||(30761220-30761252)
chr8 (20-52)||(43214461-43214493)
[»] chr7 (11 HSPs)
chr7 (20-55)||(9368350-9368385)
chr7 (20-55)||(17460210-17460245)
chr7 (20-55)||(17592969-17593004)
chr7 (20-55)||(19801574-19801609)
chr7 (20-55)||(34741795-34741830)
chr7 (20-55)||(35607339-35607374)
chr7 (20-55)||(37343324-37343359)
chr7 (20-55)||(41734802-41734837)
chr7 (20-55)||(41883614-41883649)
chr7 (20-55)||(47521925-47521960)
chr7 (20-55)||(48406432-48406467)
[»] chr5 (6 HSPs)
chr5 (20-55)||(19038111-19038146)
chr5 (20-55)||(28238681-28238716)
chr5 (21-55)||(30708121-30708155)
chr5 (20-56)||(511571-511607)
chr5 (20-48)||(42538874-42538902)
chr5 (20-52)||(42937604-42937636)
[»] chr4 (10 HSPs)
chr4 (20-55)||(1306082-1306117)
chr4 (20-55)||(6178752-6178787)
chr4 (20-55)||(30723689-30723724)
chr4 (20-55)||(41795987-41796022)
chr4 (20-55)||(49093496-49093531)
chr4 (20-55)||(50020646-50020681)
chr4 (20-55)||(50196404-50196439)
chr4 (20-55)||(51686188-51686223)
chr4 (22-55)||(46439094-46439127)
chr4 (20-52)||(21535186-21535218)
[»] chr3 (6 HSPs)
chr3 (20-55)||(2648520-2648555)
chr3 (20-55)||(34048499-34048534)
chr3 (20-55)||(42901104-42901139)
chr3 (20-55)||(46401779-46401814)
chr3 (20-55)||(50477721-50477756)
chr3 (21-55)||(54389199-54389233)
[»] chr2 (6 HSPs)
chr2 (20-55)||(5355045-5355080)
chr2 (20-55)||(15834330-15834365)
chr2 (20-55)||(28471602-28471637)
chr2 (20-55)||(30493909-30493944)
chr2 (20-55)||(36653444-36653479)
chr2 (20-55)||(43981595-43981630)
[»] chr1 (7 HSPs)
chr1 (20-55)||(3729291-3729326)
chr1 (20-55)||(13636948-13636983)
chr1 (20-55)||(22527068-22527103)
chr1 (20-55)||(26878783-26878818)
chr1 (20-55)||(38120107-38120142)
chr1 (20-55)||(47505414-47505449)
chr1 (21-55)||(47660946-47660980)


Alignment Details
Target: chr6 (Bit Score: 361; Significance: 0; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 20 - 392
Target Start/End: Original strand, 24885581 - 24885953
Alignment:
Q  20 gtaggcaacagcgacactaaccatgtcataggtgtcgaaatgatgtgcatctaaacatgtagtccaaagacgatgagacgatgtgcatctaaacatgatg 119  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24885581 gtaggcaacagcgacactaaccatgtcataggtgtcaaaatgatgtgcatctaaacatgtagtccaaagacgatgagacgatgtgcatctaaacatgatg 24885680  T
Q  120 ccaaagacgatgagactccaacttcaaaaactaaaaacaaattttttatttacgtcgttcttctctaactaactctttcctttaactgttatgagtcatg 219  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24885681 ccaaagacgatgagactccaacttcaaaaactaaaaacaaaatttttatttacgtcgttcttctctaactaactctttcctttaactgttatgagtcatg 24885780  T
Q  220 cttctaggccttttttataatctgttctatatattagctatttgaaataagaaattggctatagcaagtgtagtacacctagtaaaatcctaacacaacc 319  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  24885781 cttctaggccttttttataatctgttctatatattagctatttgaaataagaaattggctatagcaagtgtagtacaccttgtaaaatcctaacacaacc 24885880  T
Q  320 gatatttccaagacaacgctaattattacattctaattcttcaacttcccccctcaggttgaacctcactgat 392  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24885881 gatatttccaagacaacgctaattattacattctaattcttcaacttcccccctcaggttgaacctcactgat 24885953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 120 - 392
Target Start/End: Complemental strand, 24712075 - 24711804
Alignment:
Q  120 ccaaagacgatgagactccaacttcaaaaactaaaaacaaa-ttttttatttacgtcgttcttctctaactaactctttcctttaactgttatgagtcat 218  Q
    ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||    
T  24712075 ccaaagacgatgagactccaactccaaaaactaaaaacaaaattttttatttacgtcgctcttctctaactaactctttcctttaactattatgagtcat 24711976  T
Q  219 gcttctaggccttttttataatctgttctatatattagctatttgaaataagaaattggctatagcaagtgtagtacacctagtaaaatcctaacacaac 318  Q
     ||| ||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||| || ||||||||||||||||||    
T  24711975 ccttttaggccttttttataatctgttctatatattagctattgagaataagaaattggctatagcaagtgtagtacaacttgtaaaatcctaacacaac 24711876  T
Q  319 cgatatttccaagacaacgctaattattacattctaattcttcaacttcccccctcaggttgaacctcactgat 392  Q
     |||||||||||||||||||||| ||||||||||||||||||||||||  ||||||||||||||||||||||||    
T  24711875 tgatatttccaagacaacgctaactattacattctaattcttcaactt--cccctcaggttgaacctcactgat 24711804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 127 - 392
Target Start/End: Complemental strand, 24731780 - 24731514
Alignment:
Q  127 cgatgagactccaacttcaaaaactaaaaacaaattttttattt---acgtcgttcttctctaactaactctttcctttaactgttatgagtcatgcttc 223  Q
    |||||||| ||||||| |||||||||||||| ||  || |||||   ||||  ||||||| |||||  |||||||| |||||| ||| ||||| |||||     
T  24731780 cgatgagattccaactccaaaaactaaaaacgaaaattgtatttacaacgttcttcttctttaactctctctttcccttaactattacgagtcttgcttt 24731681  T
Q  224 taggccttttttataatctgttctatatattagctatttgaaataagaaattggctatagcaagtgtagtacacctagtaaaatcctaacacaaccgata 323  Q
    ||| ||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||| || ||||||||||||||||||| |||    
T  24731680 tagaccttttttataatctgttctatatattagctattgagaataagaaattggctatagcaagtgtagtacaacttgtaaaatcctaacacaaccaata 24731581  T
Q  324 tttccaagacaacgctaattattacattctaattcttcaacttcccccctcaggttgaacctcactgat 392  Q
    |||| ||||||| ||||| ||||||||||||||||||||||||  |||||||||||||| |||||||||    
T  24731580 tttcgaagacaatgctaactattacattctaattcttcaactt--cccctcaggttgaaactcactgat 24731514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 20 - 55
Target Start/End: Complemental strand, 6204258 - 6204223
Alignment:
Q  20 gtaggcaacagcgacactaaccatgtcataggtgtc 55  Q
    ||||||||||||| ||||||||||||||||||||||    
T  6204258 gtaggcaacagcgccactaaccatgtcataggtgtc 6204223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 20 - 55
Target Start/End: Complemental strand, 11691225 - 11691190
Alignment:
Q  20 gtaggcaacagcgacactaaccatgtcataggtgtc 55  Q
    ||||||||||||| ||||||||||||||||||||||    
T  11691225 gtaggcaacagcgccactaaccatgtcataggtgtc 11691190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 20 - 55
Target Start/End: Complemental strand, 22304339 - 22304304
Alignment:
Q  20 gtaggcaacagcgacactaaccatgtcataggtgtc 55  Q
    ||||||||||||| ||||||||||||||||||||||    
T  22304339 gtaggcaacagcgccactaaccatgtcataggtgtc 22304304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 20 - 55
Target Start/End: Original strand, 30826566 - 30826601
Alignment:
Q  20 gtaggcaacagcgacactaaccatgtcataggtgtc 55  Q
    ||||||||||||| ||||||||||||||||||||||    
T  30826566 gtaggcaacagcgccactaaccatgtcataggtgtc 30826601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 53
Target Start/End: Complemental strand, 3502083 - 3502050
Alignment:
Q  20 gtaggcaacagcgacactaaccatgtcataggtg 53  Q
    ||||||||||||| ||||||||||||||||||||    
T  3502083 gtaggcaacagcgccactaaccatgtcataggtg 3502050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 57 - 85
Target Start/End: Complemental strand, 24712219 - 24712191
Alignment:
Q  57 aaatgatgtgcatctaaacatgtagtcca 85  Q
    |||||||||||||||||||||||||||||    
T  24712219 aaatgatgtgcatctaaacatgtagtcca 24712191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 20 - 55
Target Start/End: Original strand, 22444 - 22479
Alignment:
Q  20 gtaggcaacagcgacactaaccatgtcataggtgtc 55  Q
    ||||||||||||| ||||||||||||||||||||||    
T  22444 gtaggcaacagcgccactaaccatgtcataggtgtc 22479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 20 - 55
Target Start/End: Original strand, 486681 - 486716
Alignment:
Q  20 gtaggcaacagcgacactaaccatgtcataggtgtc 55  Q
    ||||||||||||| ||||||||||||||||||||||    
T  486681 gtaggcaacagcgccactaaccatgtcataggtgtc 486716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 20 - 55
Target Start/End: Complemental strand, 1055635 - 1055600
Alignment:
Q  20 gtaggcaacagcgacactaaccatgtcataggtgtc 55  Q
    ||||||||||||| ||||||||||||||||||||||    
T  1055635 gtaggcaacagcgccactaaccatgtcataggtgtc 1055600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 20 - 55
Target Start/End: Original strand, 15033713 - 15033748
Alignment:
Q  20 gtaggcaacagcgacactaaccatgtcataggtgtc 55  Q
    ||||||||||||| ||||||||||||||||||||||    
T  15033713 gtaggcaacagcgccactaaccatgtcataggtgtc 15033748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 20 - 55
Target Start/End: Original strand, 23019235 - 23019270
Alignment:
Q  20 gtaggcaacagcgacactaaccatgtcataggtgtc 55  Q
    ||||||||||||| ||||||||||||||||||||||    
T  23019235 gtaggcaacagcgccactaaccatgtcataggtgtc 23019270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 20 - 55
Target Start/End: Complemental strand, 26662556 - 26662521
Alignment:
Q  20 gtaggcaacagcgacactaaccatgtcataggtgtc 55  Q
    ||||||||||||| ||||||||||||||||||||||    
T  26662556 gtaggcaacagcgccactaaccatgtcataggtgtc 26662521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 20 - 55
Target Start/End: Original strand, 41243032 - 41243067
Alignment:
Q  20 gtaggcaacagcgacactaaccatgtcataggtgtc 55  Q
    ||||||||||||| ||||||||||||||||||||||    
T  41243032 gtaggcaacagcggcactaaccatgtcataggtgtc 41243067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 20 - 55
Target Start/End: Original strand, 42482454 - 42482489
Alignment:
Q  20 gtaggcaacagcgacactaaccatgtcataggtgtc 55  Q
    ||||||||||||| ||||||||||||||||||||||    
T  42482454 gtaggcaacagcgccactaaccatgtcataggtgtc 42482489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 20 - 52
Target Start/End: Original strand, 30761220 - 30761252
Alignment:
Q  20 gtaggcaacagcgacactaaccatgtcataggt 52  Q
    ||||||||||||| |||||||||||||||||||    
T  30761220 gtaggcaacagcggcactaaccatgtcataggt 30761252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 20 - 52
Target Start/End: Complemental strand, 43214493 - 43214461
Alignment:
Q  20 gtaggcaacagcgacactaaccatgtcataggt 52  Q
    ||||||||||||| |||||||||||||||||||    
T  43214493 gtaggcaacagcgccactaaccatgtcataggt 43214461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 20 - 55
Target Start/End: Original strand, 9368350 - 9368385
Alignment:
Q  20 gtaggcaacagcgacactaaccatgtcataggtgtc 55  Q
    ||||||||||||| ||||||||||||||||||||||    
T  9368350 gtaggcaacagcgccactaaccatgtcataggtgtc 9368385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 20 - 55
Target Start/End: Original strand, 17460210 - 17460245
Alignment:
Q  20 gtaggcaacagcgacactaaccatgtcataggtgtc 55  Q
    ||||||||||||| ||||||||||||||||||||||    
T  17460210 gtaggcaacagcgccactaaccatgtcataggtgtc 17460245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 20 - 55
Target Start/End: Complemental strand, 17593004 - 17592969
Alignment:
Q  20 gtaggcaacagcgacactaaccatgtcataggtgtc 55  Q
    ||||||||||||| ||||||||||||||||||||||    
T  17593004 gtaggcaacagcgccactaaccatgtcataggtgtc 17592969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 20 - 55
Target Start/End: Complemental strand, 19801609 - 19801574
Alignment:
Q  20 gtaggcaacagcgacactaaccatgtcataggtgtc 55  Q
    ||||||||||| ||||||||||||||||||||||||    
T  19801609 gtaggcaacagtgacactaaccatgtcataggtgtc 19801574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 20 - 55
Target Start/End: Complemental strand, 34741830 - 34741795
Alignment:
Q  20 gtaggcaacagcgacactaaccatgtcataggtgtc 55  Q
    |||||||||| |||||||||||||||||||||||||    
T  34741830 gtaggcaacaacgacactaaccatgtcataggtgtc 34741795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 20 - 55
Target Start/End: Original strand, 35607339 - 35607374
Alignment:
Q  20 gtaggcaacagcgacactaaccatgtcataggtgtc 55  Q
    ||||||||||||| ||||||||||||||||||||||    
T  35607339 gtaggcaacagcgccactaaccatgtcataggtgtc 35607374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 20 - 55
Target Start/End: Complemental strand, 37343359 - 37343324
Alignment:
Q  20 gtaggcaacagcgacactaaccatgtcataggtgtc 55  Q
    |||||||||| |||||||||||||||||||||||||    
T  37343359 gtaggcaacaacgacactaaccatgtcataggtgtc 37343324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 20 - 55
Target Start/End: Complemental strand, 41734837 - 41734802
Alignment:
Q  20 gtaggcaacagcgacactaaccatgtcataggtgtc 55  Q
    |||||||||| |||||||||||||||||||||||||    
T  41734837 gtaggcaacaacgacactaaccatgtcataggtgtc 41734802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 20 - 55
Target Start/End: Complemental strand, 41883649 - 41883614
Alignment:
Q  20 gtaggcaacagcgacactaaccatgtcataggtgtc 55  Q
    ||||||||||||| ||||||||||||||||||||||    
T  41883649 gtaggcaacagcgccactaaccatgtcataggtgtc 41883614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 20 - 55
Target Start/End: Original strand, 47521925 - 47521960
Alignment:
Q  20 gtaggcaacagcgacactaaccatgtcataggtgtc 55  Q
    ||||||||||||| ||||||||||||||||||||||    
T  47521925 gtaggcaacagcgccactaaccatgtcataggtgtc 47521960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 20 - 55
Target Start/End: Complemental strand, 48406467 - 48406432
Alignment:
Q  20 gtaggcaacagcgacactaaccatgtcataggtgtc 55  Q
    ||||||||||||| ||||||||||||||||||||||    
T  48406467 gtaggcaacagcgccactaaccatgtcataggtgtc 48406432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000009; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 20 - 55
Target Start/End: Original strand, 19038111 - 19038146
Alignment:
Q  20 gtaggcaacagcgacactaaccatgtcataggtgtc 55  Q
    ||||||||||||| ||||||||||||||||||||||    
T  19038111 gtaggcaacagcgccactaaccatgtcataggtgtc 19038146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 20 - 55
Target Start/End: Original strand, 28238681 - 28238716
Alignment:
Q  20 gtaggcaacagcgacactaaccatgtcataggtgtc 55  Q
    ||||||||||||| ||||||||||||||||||||||    
T  28238681 gtaggcaacagcgccactaaccatgtcataggtgtc 28238716  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 21 - 55
Target Start/End: Complemental strand, 30708155 - 30708121
Alignment:
Q  21 taggcaacagcgacactaaccatgtcataggtgtc 55  Q
    |||||||||||| ||||||||||||||||||||||    
T  30708155 taggcaacagcgccactaaccatgtcataggtgtc 30708121  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 20 - 56
Target Start/End: Original strand, 511571 - 511607
Alignment:
Q  20 gtaggcaacagcgacactaaccatgtcataggtgtcg 56  Q
    |||||||||| || |||||||||||||||||||||||    
T  511571 gtaggcaacaacggcactaaccatgtcataggtgtcg 511607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 20 - 48
Target Start/End: Complemental strand, 42538902 - 42538874
Alignment:
Q  20 gtaggcaacagcgacactaaccatgtcat 48  Q
    |||||||||||||||||||||||||||||    
T  42538902 gtaggcaacagcgacactaaccatgtcat 42538874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 20 - 52
Target Start/End: Original strand, 42937604 - 42937636
Alignment:
Q  20 gtaggcaacagcgacactaaccatgtcataggt 52  Q
    ||||||||||||| |||||||||||||||||||    
T  42937604 gtaggcaacagcggcactaaccatgtcataggt 42937636  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 20 - 55
Target Start/End: Original strand, 1306082 - 1306117
Alignment:
Q  20 gtaggcaacagcgacactaaccatgtcataggtgtc 55  Q
    ||||||||||||| ||||||||||||||||||||||    
T  1306082 gtaggcaacagcgccactaaccatgtcataggtgtc 1306117  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 20 - 55
Target Start/End: Original strand, 6178752 - 6178787
Alignment:
Q  20 gtaggcaacagcgacactaaccatgtcataggtgtc 55  Q
    ||||||||||||| ||||||||||||||||||||||    
T  6178752 gtaggcaacagcgccactaaccatgtcataggtgtc 6178787  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 20 - 55
Target Start/End: Original strand, 30723689 - 30723724
Alignment:
Q  20 gtaggcaacagcgacactaaccatgtcataggtgtc 55  Q
    ||||||||||||| ||||||||||||||||||||||    
T  30723689 gtaggcaacagcgccactaaccatgtcataggtgtc 30723724  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 20 - 55
Target Start/End: Original strand, 41795987 - 41796022
Alignment:
Q  20 gtaggcaacagcgacactaaccatgtcataggtgtc 55  Q
    ||||||||||||| ||||||||||||||||||||||    
T  41795987 gtaggcaacagcgccactaaccatgtcataggtgtc 41796022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 20 - 55
Target Start/End: Complemental strand, 49093531 - 49093496
Alignment:
Q  20 gtaggcaacagcgacactaaccatgtcataggtgtc 55  Q
    ||||||||||||| ||||||||||||||||||||||    
T  49093531 gtaggcaacagcgccactaaccatgtcataggtgtc 49093496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 20 - 55
Target Start/End: Original strand, 50020646 - 50020681
Alignment:
Q  20 gtaggcaacagcgacactaaccatgtcataggtgtc 55  Q
    ||||||||||||| ||||||||||||||||||||||    
T  50020646 gtaggcaacagcggcactaaccatgtcataggtgtc 50020681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 20 - 55
Target Start/End: Complemental strand, 50196439 - 50196404
Alignment:
Q  20 gtaggcaacagcgacactaaccatgtcataggtgtc 55  Q
    ||||||||||||| ||||||||||||||||||||||    
T  50196439 gtaggcaacagcggcactaaccatgtcataggtgtc 50196404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 20 - 55
Target Start/End: Complemental strand, 51686223 - 51686188
Alignment:
Q  20 gtaggcaacagcgacactaaccatgtcataggtgtc 55  Q
    ||||||||||||| ||||||||||||||||||||||    
T  51686223 gtaggcaacagcggcactaaccatgtcataggtgtc 51686188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 55
Target Start/End: Complemental strand, 46439127 - 46439094
Alignment:
Q  22 aggcaacagcgacactaaccatgtcataggtgtc 55  Q
    |||||||| |||||||||||||||||||||||||    
T  46439127 aggcaacaacgacactaaccatgtcataggtgtc 46439094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 20 - 52
Target Start/End: Original strand, 21535186 - 21535218
Alignment:
Q  20 gtaggcaacagcgacactaaccatgtcataggt 52  Q
    ||||||||||||| |||||||||||||||||||    
T  21535186 gtaggcaacagcggcactaaccatgtcataggt 21535218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 20 - 55
Target Start/End: Original strand, 2648520 - 2648555
Alignment:
Q  20 gtaggcaacagcgacactaaccatgtcataggtgtc 55  Q
    ||||||||||||| ||||||||||||||||||||||    
T  2648520 gtaggcaacagcgccactaaccatgtcataggtgtc 2648555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 20 - 55
Target Start/End: Complemental strand, 34048534 - 34048499
Alignment:
Q  20 gtaggcaacagcgacactaaccatgtcataggtgtc 55  Q
    ||||||||||||| ||||||||||||||||||||||    
T  34048534 gtaggcaacagcgccactaaccatgtcataggtgtc 34048499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 20 - 55
Target Start/End: Original strand, 42901104 - 42901139
Alignment:
Q  20 gtaggcaacagcgacactaaccatgtcataggtgtc 55  Q
    ||||||||||||| ||||||||||||||||||||||    
T  42901104 gtaggcaacagcgccactaaccatgtcataggtgtc 42901139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 20 - 55
Target Start/End: Complemental strand, 46401814 - 46401779
Alignment:
Q  20 gtaggcaacagcgacactaaccatgtcataggtgtc 55  Q
    ||||||||||||| ||||||||||||||||||||||    
T  46401814 gtaggcaacagcgccactaaccatgtcataggtgtc 46401779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 20 - 55
Target Start/End: Original strand, 50477721 - 50477756
Alignment:
Q  20 gtaggcaacagcgacactaaccatgtcataggtgtc 55  Q
    ||||||||||||| ||||||||||||||||||||||    
T  50477721 gtaggcaacagcgccactaaccatgtcataggtgtc 50477756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 21 - 55
Target Start/End: Complemental strand, 54389233 - 54389199
Alignment:
Q  21 taggcaacagcgacactaaccatgtcataggtgtc 55  Q
    |||||||||||| ||||||||||||||||||||||    
T  54389233 taggcaacagcgccactaaccatgtcataggtgtc 54389199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 20 - 55
Target Start/End: Complemental strand, 5355080 - 5355045
Alignment:
Q  20 gtaggcaacagcgacactaaccatgtcataggtgtc 55  Q
    ||||||||||||| ||||||||||||||||||||||    
T  5355080 gtaggcaacagcgccactaaccatgtcataggtgtc 5355045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 20 - 55
Target Start/End: Complemental strand, 15834365 - 15834330
Alignment:
Q  20 gtaggcaacagcgacactaaccatgtcataggtgtc 55  Q
    ||||||||||||| ||||||||||||||||||||||    
T  15834365 gtaggcaacagcgccactaaccatgtcataggtgtc 15834330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 20 - 55
Target Start/End: Complemental strand, 28471637 - 28471602
Alignment:
Q  20 gtaggcaacagcgacactaaccatgtcataggtgtc 55  Q
    ||||||||||||| ||||||||||||||||||||||    
T  28471637 gtaggcaacagcgccactaaccatgtcataggtgtc 28471602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 20 - 55
Target Start/End: Original strand, 30493909 - 30493944
Alignment:
Q  20 gtaggcaacagcgacactaaccatgtcataggtgtc 55  Q
    ||||||||||||| ||||||||||||||||||||||    
T  30493909 gtaggcaacagcgccactaaccatgtcataggtgtc 30493944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 20 - 55
Target Start/End: Original strand, 36653444 - 36653479
Alignment:
Q  20 gtaggcaacagcgacactaaccatgtcataggtgtc 55  Q
    ||||||||||||| ||||||||||||||||||||||    
T  36653444 gtaggcaacagcgccactaaccatgtcataggtgtc 36653479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 20 - 55
Target Start/End: Complemental strand, 43981630 - 43981595
Alignment:
Q  20 gtaggcaacagcgacactaaccatgtcataggtgtc 55  Q
    ||||||||||||| ||||||||||||||||||||||    
T  43981630 gtaggcaacagcgccactaaccatgtcataggtgtc 43981595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 20 - 55
Target Start/End: Original strand, 3729291 - 3729326
Alignment:
Q  20 gtaggcaacagcgacactaaccatgtcataggtgtc 55  Q
    ||||||||||||| ||||||||||||||||||||||    
T  3729291 gtaggcaacagcgccactaaccatgtcataggtgtc 3729326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 20 - 55
Target Start/End: Original strand, 13636948 - 13636983
Alignment:
Q  20 gtaggcaacagcgacactaaccatgtcataggtgtc 55  Q
    ||||||||||||| ||||||||||||||||||||||    
T  13636948 gtaggcaacagcgccactaaccatgtcataggtgtc 13636983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 20 - 55
Target Start/End: Complemental strand, 22527103 - 22527068
Alignment:
Q  20 gtaggcaacagcgacactaaccatgtcataggtgtc 55  Q
    ||||||||||||| ||||||||||||||||||||||    
T  22527103 gtaggcaacagcgccactaaccatgtcataggtgtc 22527068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 20 - 55
Target Start/End: Complemental strand, 26878818 - 26878783
Alignment:
Q  20 gtaggcaacagcgacactaaccatgtcataggtgtc 55  Q
    ||||||||||||| ||||||||||||||||||||||    
T  26878818 gtaggcaacagcgccactaaccatgtcataggtgtc 26878783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 20 - 55
Target Start/End: Original strand, 38120107 - 38120142
Alignment:
Q  20 gtaggcaacagcgacactaaccatgtcataggtgtc 55  Q
    |||||||||| |||||||||||||||||||||||||    
T  38120107 gtaggcaacaacgacactaaccatgtcataggtgtc 38120142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 20 - 55
Target Start/End: Complemental strand, 47505449 - 47505414
Alignment:
Q  20 gtaggcaacagcgacactaaccatgtcataggtgtc 55  Q
    ||||||||||||| ||||||||||||||||||||||    
T  47505449 gtaggcaacagcgccactaaccatgtcataggtgtc 47505414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 21 - 55
Target Start/End: Complemental strand, 47660980 - 47660946
Alignment:
Q  21 taggcaacagcgacactaaccatgtcataggtgtc 55  Q
    ||||||||| |||||||||||||||||||||||||    
T  47660980 taggcaacaacgacactaaccatgtcataggtgtc 47660946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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