View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11433_low_19 (Length: 398)
Name: NF11433_low_19
Description: NF11433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11433_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 319; Significance: 1e-180; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 1 - 342
Target Start/End: Original strand, 49674050 - 49674392
Alignment:
| Q |
1 |
gctttcacaatacatgcacattgttaaaaagagtttaagagaggggaggttgtcctgagtgaagggcattaaatagacctcaaccaaaggttacacaaca |
100 |
Q |
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| T |
49674050 |
gctttcacaatacatgcgcattgttaaaaagagtttaagagaggggaggttgtcctgattgaagggcattaaatagacctcaaccaaaggttacacaaca |
49674149 |
T |
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| Q |
101 |
aaggtcgttaaaa-aaggttaccagaaaatccaacttcttagactttttcgttggacgtatactaaaattttggcacccaacagtgttcaatcctaagta |
199 |
Q |
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| T |
49674150 |
aaggttgttaaaaaaaggttaccagaaaatccaacttctaagactttttcgttggacgtatactaaaattttggcacccaacagtgttcaatcctaagta |
49674249 |
T |
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| Q |
200 |
tcagttactagactgtattatatacagtagaatagaaatttgaaatttccatccttgtatagtaatttaaggaaatggatccccttcagctgctgcaccg |
299 |
Q |
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| T |
49674250 |
tcagttactagactgtattatatacagtagaatagaaatttgaaatttccatccttgtatagtaatttaaggaaatggatccccttcagctgctgcaccg |
49674349 |
T |
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| Q |
300 |
tgcagctgctgtcggggtcaaaatacataatttagtctcaagt |
342 |
Q |
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| T |
49674350 |
tgcagctgctgtcggggtcaaaatacataatttagtctcaagt |
49674392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 299 - 383
Target Start/End: Original strand, 49674391 - 49674475
Alignment:
| Q |
299 |
gtgcagctgctgtcggggtcaaaatacataatttagtctcaagtcttcactttattgcttgttttcaatttaatcggtacctttg |
383 |
Q |
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| T |
49674391 |
gtgcagctgctgtcggggtcaaaatacataatttagtctcaagtcttcactttattgcttgttttcaatttaatcggtacctttg |
49674475 |
T |
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