View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11433_low_21 (Length: 386)
Name: NF11433_low_21
Description: NF11433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11433_low_21 |
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Alignment Details
Target: chr3 (Bit Score: 97; Significance: 1e-47; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 19 - 158
Target Start/End: Complemental strand, 45863433 - 45863301
Alignment:
| Q |
19 |
cctataagatgaagtgcagaagggatgttggcatcctccttggtcatcatggaggaatggttaacaattatgtggtcctgttcgaagtgcaggccggtag |
118 |
Q |
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| T |
45863433 |
cctataagatgaagtgcagaagggatgttggcatcct---tggtcatcatggaggaatggttaacaattatgtggtcctgttcaaagtgca----ggtag |
45863341 |
T |
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| Q |
119 |
ttaccctgataatcctaatctatgttgcatttagatttaa |
158 |
Q |
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| T |
45863340 |
ttaccctgataatcctaatctatgttgcattcagagttaa |
45863301 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 76; Significance: 5e-35; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 266 - 373
Target Start/End: Original strand, 17407929 - 17408036
Alignment:
| Q |
266 |
aacattctcaaacttgtgttaatatcttttacagttgtacaaaactcaggagaaatatctgcttgaccttcaaagggttgagggtgcccagcttcttttc |
365 |
Q |
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| T |
17407929 |
aacattctcaaacctatgttaatatctttcacagctgtacaaaactcaggagaaatatctgcttgatcttcaaaggcttgagggtccccagtttcttttc |
17408028 |
T |
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| Q |
366 |
ttggatct |
373 |
Q |
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| T |
17408029 |
ttggatct |
17408036 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 266 - 373
Target Start/End: Complemental strand, 4049825 - 4049718
Alignment:
| Q |
266 |
aacattctcaaacttgtgttaatatcttttacagttgtacaaaactcaggagaaatatctgcttgaccttcaaagggttgagggtgcccagcttcttttc |
365 |
Q |
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| T |
4049825 |
aacattctcaaacatttgttaatatcttttacagctgtacaaaactcaggagaaatatctgcttgatcttcaaagacttgagggaccccagtttcttttc |
4049726 |
T |
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| Q |
366 |
ttggatct |
373 |
Q |
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| T |
4049725 |
ttggatct |
4049718 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 266 - 349
Target Start/End: Original strand, 17412546 - 17412628
Alignment:
| Q |
266 |
aacattctcaaacttgtgttaatatcttttacagttgtacaaaactcaggagaaatatctgcttgaccttcaaagggttgaggg |
349 |
Q |
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| T |
17412546 |
aacattctcaag-ttgtgttaatatcttttgtagttgtacaaaactgaggagaaatatctacttgatattcaaaggcttgaggg |
17412628 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 132 - 215
Target Start/End: Original strand, 17407310 - 17407393
Alignment:
| Q |
132 |
cctaatctatgttgcatttagatttaaatgaattgtttaattaccgacttattagtaactttttcatcctcattcactgatgct |
215 |
Q |
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| T |
17407310 |
cctaatctatgttgcatttagatttaaacgaattgtatatttaccggtatagtattaactttttcattgtcattcattgatgct |
17407393 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 132 - 173
Target Start/End: Complemental strand, 4050515 - 4050474
Alignment:
| Q |
132 |
cctaatctatgttgcatttagatttaaatgaattgtttaatt |
173 |
Q |
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| T |
4050515 |
cctaatctatgttgcatttcgatttaaacgaattgtttaatt |
4050474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 19 - 92
Target Start/End: Original strand, 17407137 - 17407207
Alignment:
| Q |
19 |
cctataagatgaagtgcagaagggatgttggcatcctccttggtcatcatggaggaatggttaacaattatgtg |
92 |
Q |
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| T |
17407137 |
cctataacatgaagtgcagatgggctgtt---atcatccctggtcatcatggaggaatggataacaattctgtg |
17407207 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 174
Target Start/End: Original strand, 17411753 - 17411786
Alignment:
| Q |
141 |
tgttgcatttagatttaaatgaattgtttaatta |
174 |
Q |
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| T |
17411753 |
tgtttcatttagatttaaatgaattgtttaatta |
17411786 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 292 - 373
Target Start/End: Complemental strand, 2783518 - 2783437
Alignment:
| Q |
292 |
ttttacagttgtacaaaactcaggagaaatatctgcttgaccttcaaagggttgagggtgcccagcttcttttcttggatct |
373 |
Q |
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| T |
2783518 |
ttttacagctctacaaaactcaggagaagtatctgtttgatcttcaaagggttgaggatccccagtttcttttcttggatct |
2783437 |
T |
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