View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11433_low_22 (Length: 358)
Name: NF11433_low_22
Description: NF11433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11433_low_22 |
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Alignment Details
Target: chr7 (Bit Score: 319; Significance: 1e-180; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 19 - 341
Target Start/End: Complemental strand, 41061900 - 41061578
Alignment:
| Q |
19 |
gcggctatgtaaaagatcgattgattcaacagtttgtggttgtaaggtgtatttattaatgtcaacaacaaggattgcaatatcacatagagctgtagag |
118 |
Q |
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| T |
41061900 |
gcggctatgtaaaagatcgattgattcaacagtttgtggttgtaaggtgtatttattaatgtcaacaacaaggattgcaatatcacatagagctgtagag |
41061801 |
T |
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| Q |
119 |
agagaccttgaaacagtgagaagtggttggccaggggtgtcaataaagagtaaaccaggaagtctgattgattgatgatagggtatcatttcaaagtatg |
218 |
Q |
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| T |
41061800 |
agagaccttgaaacagtgagaagtggttggccaggggtgtcaataaagagtaaaccaggaagtctgattgattgatgatagggtatcatttcaaagtatg |
41061701 |
T |
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| Q |
219 |
tggcagaattagttatagtagaattagaaggaggaggattaggaactactttaccacgcatataatccagcagcgtagtttttccactccccatatgacc |
318 |
Q |
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| T |
41061700 |
tggcagaattagttatagtagaattagaaggaggtggattaggaactactttaccacgcatataatccagcagcgtagtttttccactccccatatgacc |
41061601 |
T |
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| Q |
319 |
caacattgagcaaattggagcac |
341 |
Q |
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| T |
41061600 |
caacattgagcaaattggagcac |
41061578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 72 - 112
Target Start/End: Complemental strand, 41371259 - 41371219
Alignment:
| Q |
72 |
tattaatgtcaacaacaaggattgcaatatcacatagagct |
112 |
Q |
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| T |
41371259 |
tattaatgtcaacaaccaagattgcaatatcacatagagct |
41371219 |
T |
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