View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11433_low_23 (Length: 355)
Name: NF11433_low_23
Description: NF11433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11433_low_23 |
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Alignment Details
Target: chr1 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 327
Target Start/End: Complemental strand, 35364273 - 35363944
Alignment:
| Q |
1 |
accccaatcaacaaagatttcccgtccttgctatcattaaatgcatggttatacattgtgatcaatgaatgatttaatgagggataacaaaagattggtg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |
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| T |
35364273 |
accccaatcaacaaagatttcccgtccttgctatcattaaatgcatggttatacattgtgatcaatgactgatttaatgagggataacaaaagattagtg |
35364174 |
T |
|
| Q |
101 |
tttgttgaacgtgttcctataatttttccttccattatgaatcagagggagcgaagacagtgacagaaggtgaatgttcaatccataaaagcaattagag |
200 |
Q |
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||||||||||||||||||||| |||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
35364173 |
tttgttgaacgtgttcctatagtttttcctcccattatgaatcagagggagtgaagacagtgacagaaggtgaatgttcaatacataaaagcaattagag |
35364074 |
T |
|
| Q |
201 |
ggatttc-nnnnnnntcattggaaggtgattgtcatgatcgttgatgatctagatcggtattcatcgtaatattcattgattttggattggatgtattga |
299 |
Q |
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| T |
35364073 |
ggatttcaaaaaaaatcattggaaggtgattgtcatgatcgttgatgatctagatcggcattcatcgtaatattcattgattttggattggatgtattga |
35363974 |
T |
|
| Q |
300 |
--tctctctcccatctaattatttctctga |
327 |
Q |
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| T |
35363973 |
tctctctctcccatctaattatttctctga |
35363944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 64; Significance: 6e-28; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 164 - 276
Target Start/End: Original strand, 32662635 - 32662747
Alignment:
| Q |
164 |
cagaaggtgaatgttcaatccataaaagcaattagagggatttcnnnnnnntcattggaaggtgattgtcatgatcgttgatgatctagatcggtattca |
263 |
Q |
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| T |
32662635 |
cagaaggtgaatgttcaatccgtaaaagcaattagatagatttcaaaacattcactagaaggtgattgtcatgatcgttgctgatctagatcggtattca |
32662734 |
T |
|
| Q |
264 |
tcgtaatattcat |
276 |
Q |
| |
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|| |||||||||| |
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| T |
32662735 |
tcataatattcat |
32662747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 164 - 199
Target Start/End: Original strand, 32656111 - 32656147
Alignment:
| Q |
164 |
cagaaggtgaatgttcaatccat-aaaagcaattaga |
199 |
Q |
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||||||||||||||||||||||| ||||||||||||| |
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| T |
32656111 |
cagaaggtgaatgttcaatccataaaaagcaattaga |
32656147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 152 - 306
Target Start/End: Original strand, 21786651 - 21786803
Alignment:
| Q |
152 |
cgaagacagtgacagaaggtgaatgttcaatccataaaagcaattagagggatttcnnnnnnntcattggaaggtgattgtcatgatcgttgatgatcta |
251 |
Q |
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||||||||||| | || ||||| | ||||||| ||| |||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |
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| T |
21786651 |
cgaagacagtggcggagggtgattattcaatcgatacaagcaattagagggatttttaaaaattcaccggaaggtgattgtcatgatcgttgatgatcta |
21786750 |
T |
|
| Q |
252 |
gatcggtattcatcgtaatattcattgattttggattggatgtattgatctctct |
306 |
Q |
| |
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||| ||||||| || |||||||||||| ||||||| ||||||| | ||||||| |
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|
| T |
21786751 |
gataggtattcttcataatattcattg--gttggattcgatgtatcggtctctct |
21786803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 235 - 306
Target Start/End: Original strand, 38682039 - 38682108
Alignment:
| Q |
235 |
tgatcgttgatgatctagatcggtattcatcgtaatattcattgattttggattggatgtattgatctctct |
306 |
Q |
| |
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|||||||| ||||||||||| ||||||| || |||||||||||| |||||||| |||||| | ||||||| |
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| T |
38682039 |
tgatcgtttatgatctagataggtattcttcataatattcattg--gttggattgaatgtatcggtctctct |
38682108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 235 - 306
Target Start/End: Original strand, 38683292 - 38683361
Alignment:
| Q |
235 |
tgatcgttgatgatctagatcggtattcatcgtaatattcattgattttggattggatgtattgatctctct |
306 |
Q |
| |
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|||||||| ||||||||||| ||||||| || |||||||||||| |||||||| |||||| | ||||||| |
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|
| T |
38683292 |
tgatcgtttatgatctagataggtattcttcataatattcattg--gttggattgaatgtatcggtctctct |
38683361 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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