View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11433_low_25 (Length: 303)
Name: NF11433_low_25
Description: NF11433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11433_low_25 |
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Alignment Details
Target: chr3 (Bit Score: 263; Significance: 1e-147; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 18 - 288
Target Start/End: Original strand, 53688621 - 53688891
Alignment:
| Q |
18 |
ggtatactttttgttcatgactggggattatatatcttggcctgattgtttgagagaggttaatagttgctatgacaggtcagaaacagtagccaaatat |
117 |
Q |
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| T |
53688621 |
ggtatactttttgttcatgacaggggattatatatcttggcctgattgtttgagagaggttaatagttgctatgacaggtcagaaacagtagccaaatat |
53688720 |
T |
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| Q |
118 |
ttggatgagaaggaactatggagcacaaactcggacttaaatatgccaacaacattgcaaaaattctatgttgagaatttggagcatgatgatgaatagc |
217 |
Q |
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| T |
53688721 |
ttggatgagaaggaactatggagcacaaactcggacttaaatatgccaacaacattgcaaaaattctatgttgagaatttggagcatgatgatgaatagc |
53688820 |
T |
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| Q |
218 |
agaagaaggcttggtgttgcataatgttcatagtacctgggtttcaatccggagggactacatctgaatct |
288 |
Q |
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| T |
53688821 |
agaagaacgcttggtgttgcataatgttcatagtacctgggtttcaatccggagggactacatctgaatct |
53688891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 167 - 237
Target Start/End: Original strand, 53695850 - 53695920
Alignment:
| Q |
167 |
caacattgcaaaaattctatgttgagaatttggagcatgatgatgaatagcagaagaaggcttggtgttgc |
237 |
Q |
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| T |
53695850 |
caacattgcaaaaacactatgttgagaatctggagcatgatgatgaatagcagaagaaggcttggtgttgc |
53695920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 18 - 87
Target Start/End: Original strand, 53695725 - 53695794
Alignment:
| Q |
18 |
ggtatactttttgttcatgactggggattatatatcttggcctgattgtttgagagaggttaatagttgc |
87 |
Q |
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| T |
53695725 |
ggtataatttttgtctatgacaggggattatatatcttggccatattgtttgagagaggtaaatagttgc |
53695794 |
T |
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