View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11433_low_26 (Length: 297)

Name: NF11433_low_26

Description: NF11433

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF11433_low_26

[»] chr8 (2 HSPs)

Target: chr8 (Bit Score: 245; Significance: 1e-136; HSPs: 2)

Name: chr8

Description:

Target: chr8; HSP #1

Raw Score: 245; E-Value: 1e-136

Query Start/End: Original strand, 42 - 286

Target Start/End: Complemental strand, 35364141 - 35363897

Alignment:

Q	42	ccccgagaaaatccacccagccattttcccgagaaaatcaccaacacagcacaagaacaacaacaatcaatcgatgatctacttaccgtgattccactcg	141	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	35364141	ccccgagaaaatccacccagccattttcccgagaaaatcaccaacacagcacaagaacaacaacaatcaatcgatgatctacttaccgtgattccactcg	35364042	T

Q	142	aggacgaagacgatgatgaggtcgacccctcatggaacaaaatctaaatctcacattgctcacaacttccactgatccagatgatgttcgactgattgag	241	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	35364041	aggacgaagacgatgatgaggtcgacccctcatggaacaaaatctaaatctcacattgctcacaacttccactgatccagatgatgttcgactgattgag	35363942	T

Q	242	tgggaagattttgagcatgatcttgctaggttatcgagtctctct	286	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	35363941	tgggaagattttgagcatgatcttgctaggttatcgagtctctct	35363897	T

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Target: chr8; HSP #2

Raw Score: 36; E-Value: 0.00000000003

Query Start/End: Original strand, 62 - 121

Target Start/End: Complemental strand, 35364815 - 35364756

Alignment:

Q	62	ccattttcccgagaaaatcaccaacacagcacaagaacaacaacaatcaatcgatgatct	121	Q
		\|\|\|\| \|\|\|\| \|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\|\|\|
T	35364815	ccatattcctgagaaaatcatcaacacaccacaagaacaacaagaatcaattgatgatct	35364756	T

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