View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11433_low_27 (Length: 284)
Name: NF11433_low_27
Description: NF11433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11433_low_27 |
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| [»] scaffold0187 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 267
Target Start/End: Complemental strand, 37865851 - 37865569
Alignment:
| Q |
1 |
ataatctttctgattttatgtatgatcgatgatccatcattcactat----------------ttcttctgttacaagtcacaaaattatacgtacagtc |
84 |
Q |
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| T |
37865851 |
ataatctttctgattttatgtatgatcgatgatccatcattcactataattgtcatttactatttcttctgttacaagtcacaaaattatacgtacagtc |
37865752 |
T |
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| Q |
85 |
attaatagttaatacaatatgattgtcagtcccacatagatgagatatcttgaacatgcgtttgtaagtggcaggtagttcacactttacaagctagttt |
184 |
Q |
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| T |
37865751 |
attaatagttaatacaatatgattgtcagtcccacatagatgagatatcttgaacatgcgtttgtaagtggcaggtagttcacactttacaagctagttt |
37865652 |
T |
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| Q |
185 |
tgtcggattgagttgggccaaacacaaattattgtatagtataaagtatatccaattagggccactcacaattgactgttact |
267 |
Q |
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| T |
37865651 |
tgtcggattgagttgggccaaacacaaattattgtatagtataaagtatatccaattagggccactcacaattgactgttact |
37865569 |
T |
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Target: scaffold0187 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0187
Description:
Target: scaffold0187; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 40
Target Start/End: Original strand, 1615 - 1653
Alignment:
| Q |
2 |
taatctttctgattttatgtatgatcgatgatccatcat |
40 |
Q |
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| T |
1615 |
taatctttctgattttatatattatcgatgatccatcat |
1653 |
T |
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