View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11433_low_3 (Length: 950)
Name: NF11433_low_3
Description: NF11433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11433_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 738; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 738; E-Value: 0
Query Start/End: Original strand, 19 - 943
Target Start/End: Complemental strand, 9299534 - 9298596
Alignment:
| Q |
19 |
ccataccatttcaatgagagtatgtttgattgaatggaagatgcgtgnnnnnnngaaacgcgatcaaacagtttgatgcagtatacaagatcagattcaa |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| | | |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9299534 |
ccataccatttcaatgagagtatgtttgattgaatggaagatgcgggaaataaagcaacgcgatcaaacagtttgatgcagtatacaagatcagattcaa |
9299435 |
T |
|
| Q |
119 |
tgattctttcgctatccgaatcagcaacataaattggacatgatgtcatattttgtgcttcgtacacttgagagtagcttcagagttgtacaactgaaga |
218 |
Q |
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|||| || ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| |
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| T |
9299434 |
tgatactatcgctatccgaataagcaacataaattggacatgatgtcatattttgtgcttcgtacacttgattgtagcttctgagttgtacaactgaaga |
9299335 |
T |
|
| Q |
219 |
acaattgaagaaactgatatttc---------------cggagatataaggcttaacaggaaaaattgatgaaaagttgtggtcaagtaagagctgtggt |
303 |
Q |
| |
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||||||||||||||||||||||| |||||| ||||||||||| |||||||||||||||||||||||||||||||||||| |||||| |
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| T |
9299334 |
acaattgaagaaactgatatttctagatacagaatatccggagagataaggcttaaaaggaaaaattgatgaaaagttgtggtcaagtaagagttgtggt |
9299235 |
T |
|
| Q |
304 |
aaacaatttccaggatcagataaatctattcttgggtttgtataatcaatgtcagtgaggatgagtttcacagggactggttgagtaggaagttcaagaa |
403 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9299234 |
aaacaatttccaggatcagataaatctattcttgggtctgtataatcaatgtcagtgaggatgagtttcacagggactggttgagtaggaagttcaagaa |
9299135 |
T |
|
| Q |
404 |
tctttttgttatgcgtacattcgagcttgaagggacatcgattggatgaatcactgagacaatttccaaggttcattagaaatagcagcatagcaagttt |
503 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9299134 |
tctttttgttatgtgtacattcgagcttgaagggacatcgattggatgaatcactgagacaatttccaaggttcattagaaatagcagcatagcaagttt |
9299035 |
T |
|
| Q |
504 |
tgttaatatcagtgacatgttgaagggattcttagaactttaaactggtataatttaatatatagagcaagagagggataaagtagacagaagatgatat |
603 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
9299034 |
tgttaatatcagtgacatgttgaagggattcttagaactttaaactggtataatttaatatatagagcaagagagggataaagtagaaagaagatgatat |
9298935 |
T |
|
| Q |
604 |
aaagaaacataattgtatctatctctatgctattaagaatgaaaataatatgctgcnnnnnnnnnntattgattaagaatcggtcaaagtccaagaatat |
703 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| |||||||||||||||||||||||||||||| |
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| T |
9298934 |
aaagaaacataattgtatctatctctatgctattaaaaatgaaaataatatgctgc-aaaaaaaaatatagattaagaatcggtcaaagtccaagaatat |
9298836 |
T |
|
| Q |
704 |
gatgtgcattgcaagctccctattcaagtacatgataaataatgctaagaaacacattgatcttcaagtacatgtttcaacaaaatgtttttgatcgatt |
803 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| |
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| T |
9298835 |
gatgtgcattgcaagctccctattcaagtacatgataaataatgctaagaaacacattgatctacaagtacatgtttcaacaaaatgtttttgattgatt |
9298736 |
T |
|
| Q |
804 |
aaaattcacactgagtcctccaaatttacgagacccacataatcaattcaaaagagttttgaaaaatatgtattaaaaattatgttgccatcacttaatt |
903 |
Q |
| |
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|||||||| | ||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
9298735 |
aaaattcatagtgaatcctccaaatttacgatacccacataatcaattcaaaagagttttgaaaaatatgtattaaaaattatgttgccatcatttaatt |
9298636 |
T |
|
| Q |
904 |
ttaatatcaacacctttttctctcgcttctcttcatctca |
943 |
Q |
| |
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|||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
9298635 |
ttaatatcaacacctttttctctcgcttctcttcttctca |
9298596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 80; E-Value: 5e-37
Query Start/End: Original strand, 267 - 474
Target Start/End: Original strand, 9258442 - 9258649
Alignment:
| Q |
267 |
aattgatgaaaagttgtggtcaagtaagagctgtggtaaacaatttccaggatcagataaatctattcttgggtttgtataatcaatgtcagtgaggatg |
366 |
Q |
| |
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||||||||||||||||||||||| |||||| || ||||||||||||| | |||||||| |||||| ||| | |||||||||||| |||| ||| |
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| T |
9258442 |
aattgatgaaaagttgtggtcaaataagagttgcggtaaacaatttctggtatcagatagatctatacttttgaaacgataatcaatgtctgtgaccatg |
9258541 |
T |
|
| Q |
367 |
agtttcacagggactggttgagtaggaagttcaagaatctttttgttatgcgtacattcgagcttgaagggacatcgattggatgaatcactgagacaat |
466 |
Q |
| |
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||||||||||| ||||| |||||||||||||||||||| || ||||||| ||||| | ||||||||||||||||| | |||| | |||||| |||| || |
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| T |
9258542 |
agtttcacaggaactgggtgagtaggaagttcaagaatattcatgttatgtgtacagttgagcttgaagggacatccaatggaagcatcacttagaccat |
9258641 |
T |
|
| Q |
467 |
ttccaagg |
474 |
Q |
| |
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|||||||| |
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| T |
9258642 |
ttccaagg |
9258649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 255 - 325
Target Start/End: Original strand, 9467665 - 9467735
Alignment:
| Q |
255 |
cttaacaggaaaaattgatgaaaagttgtggtcaagtaagagctgtggtaaacaatttccaggatcagata |
325 |
Q |
| |
|
||||| ||||||| |||||||||| ||| ||||||||||||| ||||| | ||| |||||||||||||||| |
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|
| T |
9467665 |
cttaaaaggaaaatttgatgaaaaattgcggtcaagtaagagttgtggaagacagtttccaggatcagata |
9467735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 59; Significance: 2e-24; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 261 - 407
Target Start/End: Complemental strand, 9170673 - 9170527
Alignment:
| Q |
261 |
aggaaaaattgatgaaaagttgtggtcaagtaagagctgtggtaaacaatttccaggatcagataaatctattcttgggtttgtataatcaatgtcagtg |
360 |
Q |
| |
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||||||| ||||||||||||||| |||||||||||| || |||| ||| |||||||||||||||| || | | || || | ||||||||||||||||| |
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| T |
9170673 |
aggaaaacttgatgaaaagttgttgtcaagtaagagttgcggtagacagtttccaggatcagatagataaaatgtttggagtctataatcaatgtcagtg |
9170574 |
T |
|
| Q |
361 |
aggatgagtttcacagggactggttgagtaggaagttcaagaatctt |
407 |
Q |
| |
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| || ||||| ||||| || || ||||||||||||||||||||||| |
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| T |
9170573 |
acaattagttttacaggtaccggatgagtaggaagttcaagaatctt |
9170527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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