View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11433_low_40 (Length: 245)
Name: NF11433_low_40
Description: NF11433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11433_low_40 |
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Alignment Details
Target: chr4 (Bit Score: 203; Significance: 1e-111; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 54905559 - 54905333
Alignment:
| Q |
1 |
tttgacctagtaattagtgatgttagcatgccagacatggatggcttcaagctccttgagcaagctggacttgaaatggatttacctttcatcagtaagc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
54905559 |
tttgacctagtaattagtgatgttagcatgccagacatggatggcttcaagctccttgagcaagttggacttgaaatggatttacctttcatcagtaagc |
54905460 |
T |
|
| Q |
101 |
tcacacacctttgtcttaaaatctgtattgtttacctaatttatatacacttcttttattcagatagtatctaagtgacgattttttgtgtgtgatatat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||| | || |||||||| ||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
54905459 |
tcacacacctttgtcttaaaatctgtattgtttacctaattaagatccacttcttatattcagattgtatctaagtgacgattttttgtgtgtgatatat |
54905360 |
T |
|
| Q |
201 |
agtgttgtcagtaaatgatgatataga |
227 |
Q |
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||||||||||||||||||||||||||| |
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| T |
54905359 |
agtgttgtcagtaaatgatgatataga |
54905333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 54889510 - 54889287
Alignment:
| Q |
1 |
tttgacctagtaattagtgatgttagcatgccagacatggatggcttcaagctccttgagcaagctggacttgaaatggatttacctttcatcagtaagc |
100 |
Q |
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|||||||| |||||||||||||| ||||||||||| |||||||| ||||||||||||||||||| |||||||||||| || |||| ||||||||||||| |
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| T |
54889510 |
tttgaccttgtaattagtgatgtaagcatgccagaaatggatggattcaagctccttgagcaagttggacttgaaatagacctacccttcatcagtaagc |
54889411 |
T |
|
| Q |
101 |
tcacacacctttgtcttaaaatctgtattgtttacctaatttatatacacttcttttattcagatagtatc--taagtgacgattttttgtgtgtgatat |
198 |
Q |
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| T |
54889410 |
tcacatacctttgttttagcatgtttattattcagctaactaagattcacttcttatattcagatagtgtctttaagtgatgatttttt-tttgtgtgat |
54889312 |
T |
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| Q |
199 |
atagtgttgtcagtaaatgatgata |
223 |
Q |
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||||||||||||| ||||||||||| |
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| T |
54889311 |
atagtgttgtcaggaaatgatgata |
54889287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 11 - 187
Target Start/End: Complemental strand, 54895123 - 54894941
Alignment:
| Q |
11 |
taattagtgatgttagcatgccagacatggatggcttcaagctccttgagcaagctggacttgaaatggatttacctttcatcagtaagctcacacacct |
110 |
Q |
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||||||||||||| | ||||||||| |||||||| ||||||||||||||||||| ||||||||| ||||| | |||||||| |||||||| ||| |||| |
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| T |
54895123 |
taattagtgatgtaaacatgccagaaatggatggtttcaagctccttgagcaagttggacttgagatggacctgcctttcattagtaagctaacaaacct |
54895024 |
T |
|
| Q |
111 |
----ttgtcttaaaatctgtattgtttacctaatttatatacacttcttttattcagatagtatc--taagtgacgatttttt |
187 |
Q |
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| T |
54895023 |
taaattgtcttaacatgtgtattattcagctaattaagatccacttcttatattcatatagaatctttaagtgatgatttttt |
54894941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 2888533 - 2888631
Alignment:
| Q |
1 |
tttgacctagtaattagtgatgttagcatgccagacatggatggcttcaagctccttgagcaagctggacttgaaatggatttacctttcatcagtaag |
99 |
Q |
| |
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|||||||||||||| || ||||| ||||||||||||||||| || ||||| ||||||| | ||||||||| |||||||||||| |||| |||||| |
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| T |
2888533 |
tttgacctagtaatcagcaatgttcatatgccagacatggatggatttaagcttcttgagcttgttggacttgagatggatttacctgtcataagtaag |
2888631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 2904636 - 2904734
Alignment:
| Q |
1 |
tttgacctagtaattagtgatgttagcatgccagacatggatggcttcaagctccttgagcaagctggacttgaaatggatttacctttcatcagtaag |
99 |
Q |
| |
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|||||||||||||| || ||||| ||||||||||||||||| || ||||| ||||||| | ||||||||| ||||| ||||| ||||||||||| |
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| T |
2904636 |
tttgacctagtaatcagcaatgttcatatgccagacatggatggatttaagcttcttgagcttgttggacttgagatggacctacctgtcatcagtaag |
2904734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 2893128 - 2893226
Alignment:
| Q |
1 |
tttgacctagtaattagtgatgttagcatgccagacatggatggcttcaagctccttgagcaagctggacttgaaatggatttacctttcatcagtaag |
99 |
Q |
| |
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|||||||||||||| || ||||| |||||||||||||| || || ||||| ||||||| | ||||||||| ||||| ||||| ||||||||||| |
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| T |
2893128 |
tttgacctagtaatcagcaatgttcatatgccagacatggacggatttaagcttcttgagcttgttggacttgagatggacctacctgtcatcagtaag |
2893226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 48870546 - 48870467
Alignment:
| Q |
1 |
tttgacctagtaattagtgatgttagcatgccagacatggatggcttcaagctccttgagcaagctggacttgaaatgga |
80 |
Q |
| |
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|||||||||||||| ||| ||||| ||||||||||||||||| || ||||| ||||||| | ||||||||| ||||| |
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| T |
48870546 |
tttgacctagtaatcagtaatgttcatatgccagacatggatggatttaagcttcttgagcttgttggacttgagatgga |
48870467 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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