View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11433_low_44 (Length: 244)

Name: NF11433_low_44

Description: NF11433

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF11433_low_44

[»] chr7 (2 HSPs)

Target: chr7 (Bit Score: 154; Significance: 8e-82; HSPs: 2)

Name: chr7

Description:

Target: chr7; HSP #1

Raw Score: 154; E-Value: 8e-82

Query Start/End: Original strand, 16 - 169

Target Start/End: Original strand, 48252504 - 48252657

Alignment:

Q	16	atgaatgataataaggagtttaaaagtttgataatatttcagtataacactaattgtatgtttggtttggcttctagatagatgtgagtttgatttcacc	115	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	48252504	atgaatgataataaggagtttaaaagtttgataatatttcagtataacactaattgtatgtttggtttggcttctagatagatgtgagtttgatttcacc	48252603	T

Q	116	gcaaaaacagagaaatattaaatgcatgttaggatttgcagtgatactataaga	169	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	48252604	gcaaaaacagagaaatattaaatgcatgttaggatttgcagtgatactataaga	48252657	T

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Target: chr7; HSP #2

Raw Score: 54; E-Value: 4e-22

Query Start/End: Original strand, 165 - 226

Target Start/End: Original strand, 48253013 - 48253074

Alignment:

Q	165	taagaataagagtgaaccatcacaatttatttctacaaaaactacatctgtatgtttggttt	226	Q
		\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	48253013	taagaatcagagtgaaccatcacaatttatttctacaaaaactacatttgtatgtttggttt	48253074	T

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