View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11433_low_9 (Length: 545)

Name: NF11433_low_9
Description: NF11433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11433_low_9
NF11433_low_9
[»] chr1 (6 HSPs)
chr1 (2-529)||(6207113-6207640)
chr1 (252-423)||(6215031-6215202)
chr1 (2-146)||(6214773-6214918)
chr1 (354-407)||(6177562-6177615)
chr1 (2-100)||(6177303-6177401)
chr1 (182-236)||(6214976-6215030)


Alignment Details
Target: chr1 (Bit Score: 487; Significance: 0; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 487; E-Value: 0
Query Start/End: Original strand, 2 - 529
Target Start/End: Original strand, 6207113 - 6207640
Alignment:
Q  2 gtacctgcaatgagaccattttatgggtttaacatgaagagccttttgaacttctgggagatttaaataggcagcggtatagtcttcagcacaagggtcg 101  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  6207113 gtacctgcaatgagaccattttatgggtttaacatgaagagccttttgaacttctgggagatttaaataggcagcggtataatcttcagcacaagggtcg 6207212  T
Q  102 atattactgacctgcaaatttcatttaagaagattttgtaattaactttatcgactaattttactaaacactttaaatattttaatcagatagtctatcc 201  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  6207213 atattactgacctgcaaatttcatttaagaagattttgtaattaactttatcgattaattttactaaacactttaaatattttaatcagatagtctatcc 6207312  T
Q  202 gttgtttgctatagattcatctaccatcggctaacaaaatgagctattttttatcaaacagaatgtaagcagactaatctactcgagctagttccgattt 301  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6207313 gttatttgctatagattcatctaccatcggctaacaaaatgagctattttttatcaaacagaatgtaagcagactaatctactcgagctagttccgattt 6207412  T
Q  302 cgcataccatatatacaaaaaagaatgtaacttacaaagtaactagctccattttttgttgcagatgaattacaaactggggcatatatgttgtaaacgt 401  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6207413 tgcataccatatatacaaaaaagaatgtaacttacaaagtaactagctccattttttgttgcagatgaattacaaactggggcatatatgttgtaaacgt 6207512  T
Q  402 caatatctacaagctcatcatccgatttaaattcatataagaagcattcccttaaatttgttacattcctaaagtcaccacaannnnnnncaattcctgc 501  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||    
T  6207513 caatatctacaagctcatcatccgctttaaattcatataagaagcattcccttaaatttgttacattcctaaagtcaccacaatttttttcaattcctgc 6207612  T
Q  502 atgagtttcgtcagagattagagcatgc 529  Q
    ||||||||||||||||||||||||||||    
T  6207613 atgagtttcgtcagagattagagcatgc 6207640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 252 - 423
Target Start/End: Original strand, 6215031 - 6215202
Alignment:
Q  252 ttatcaaacagaatgtaagcagactaatctactcgagctagttccgatttcgcataccatatatacaaaaaagaatgtaacttacaaagtaactagctcc 351  Q
    |||||| ||||||| ||||||||||| |||||||||||| ||||||||||||||||| ||| |||||||| |||||| |||||||| |||||||||| ||    
T  6215031 ttatcagacagaatctaagcagactactctactcgagctggttccgatttcgcatactataaatacaaaatagaatgcaacttacagagtaactagcacc 6215130  T
Q  352 attttttgttgcagatgaattacaaactggggcatatatgttgtaaacgtcaatatctacaagctcatcatc 423  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||    
T  6215131 atattttgttgcagatgaattacaaactggggcatatatgttgtaaacgtcaatatttccaagctcatcatc 6215202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 2 - 146
Target Start/End: Original strand, 6214773 - 6214918
Alignment:
Q  2 gtacctgcaatgagaccattttatgggtttaacatgaagagccttttgaacttctgggagatttaaataggcagcggtatagtcttcagcacaagggtcg 101  Q
    |||||||||| ||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| || |||||| ||||||||||||||||||    
T  6214773 gtacctgcaaggagaccattttgtgcgtttaacatgaagagccttttgaacttctgggagatttaaataggtagtggtataatcttcagcacaagggtcg 6214872  T
Q  102 atattactgacctgcaaatttcatttaagaag-attttgtaattaa 146  Q
    | |||||||||||||||||||||||||||||| |||||||||||||    
T  6214873 acattactgacctgcaaatttcatttaagaagaattttgtaattaa 6214918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 354 - 407
Target Start/End: Original strand, 6177562 - 6177615
Alignment:
Q  354 tttttgttgcagatgaattacaaactggggcatatatgttgtaaacgtcaatat 407  Q
    |||||||||||||||||||||||| |||||||||||||||||||| ||||||||    
T  6177562 tttttgttgcagatgaattacaaaatggggcatatatgttgtaaatgtcaatat 6177615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 2 - 100
Target Start/End: Original strand, 6177303 - 6177401
Alignment:
Q  2 gtacctgcaatgagaccattttatgggtttaacatgaagagccttttgaacttctgggagatttaaataggcagcggtatagtcttcagcacaagggtc 100  Q
    ||||||||||  |||||||||| ||||||||||||||||||||| ||||||||  || || |||||||| |||   ||||| ||||||| |||||||||    
T  6177303 gtacctgcaagaagaccattttgtgggtttaacatgaagagcctcttgaactttaggtaggtttaaataagcattagtataatcttcagaacaagggtc 6177401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 182 - 236
Target Start/End: Original strand, 6214976 - 6215030
Alignment:
Q  182 tttaatcagatagtctatccgttgtttgctatagattcatctaccatcggctaac 236  Q
    ||||||||||||||||||||||| |||| ||||| |||||| |||||| ||||||    
T  6214976 tttaatcagatagtctatccgttatttgttataggttcatcaaccatcagctaac 6215030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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