View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11434_high_12 (Length: 243)
Name: NF11434_high_12
Description: NF11434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11434_high_12 |
 | |
|
| [»] chr1 (3 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 184; Significance: 1e-99; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 12 - 243
Target Start/End: Complemental strand, 49691450 - 49691219
Alignment:
| Q |
12 |
acatcacctaaaaccaatcctagcttccgagctggacttctacccttcctgcataacaataattcaaataggaaatagtaagcaaaactctaatgatcca |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
49691450 |
acatcacctaaaaccaatcctagcttccgagctggacttctacccttcctgcataataataattcaaataggaaatagtaagcaaaactctaatgatcga |
49691351 |
T |
|
| Q |
112 |
tgtaatgtcttaaactgtttctgtatgttttgttaatgtattaccttgcgacgcaataaatttgtcctttgctgtcaacatgacagtgannnnnnnnatc |
211 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||| ||| ||| |
|
|
| T |
49691350 |
tgtaatgtcttaaactgttcctgtatgttttgttaatgcattaccttgcgacgcaataaatttgtccgttgctgtcaacatgacaatgattttttttatc |
49691251 |
T |
|
| Q |
212 |
atggtaatggttatgacactgttgacagtcat |
243 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
49691250 |
atggtaatggttatgacactgttgacagtcat |
49691219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 68 - 196
Target Start/End: Complemental strand, 49679753 - 49679626
Alignment:
| Q |
68 |
caataattcaaataggaaatagtaagcaaaactctaatgatccatgtaatgtcttaaactgtttctgtatgttttgttaatgtattaccttgcgacgcaa |
167 |
Q |
| |
|
|||||||||||||||||| |||| ||||||| |||||||||||||||||| || |||| |||||||||| |||||||||| | ||||||||||| |||| |
|
|
| T |
49679753 |
caataattcaaataggaagtagttagcaaaattctaatgatccatgtaatatcgtaaa-tgtttctgtaagttttgttaacgcattaccttgcggggcaa |
49679655 |
T |
|
| Q |
168 |
taaatttgtcctttgctgtcaacatgaca |
196 |
Q |
| |
|
|||||||||||||| ||||||||| |||| |
|
|
| T |
49679654 |
taaatttgtccttttctgtcaacacgaca |
49679626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 67
Target Start/End: Complemental strand, 49680431 - 49680376
Alignment:
| Q |
12 |
acatcacctaaaaccaatcctagcttccgagctggacttctacccttcctgcataa |
67 |
Q |
| |
|
|||||||||||||||||| |||||||| || || |||||||||| |||||||||| |
|
|
| T |
49680431 |
acatcacctaaaaccaatattagcttccaagttgaacttctacccctcctgcataa |
49680376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University