View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11434_high_5 (Length: 417)
Name: NF11434_high_5
Description: NF11434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11434_high_5 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 109; Significance: 1e-54; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 287 - 399
Target Start/End: Original strand, 13949623 - 13949735
Alignment:
| Q |
287 |
tggtgggtttgagtgtagtgttagaatctcaaaaaggtggtggtattagcaatagcaagaagaaggaaactccaaaagtgattaacaaaacaatgatgct |
386 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13949623 |
tggtgggtttaagtgtagtgttagaatctcaaaaaggtggtggtattagcaatagcaagaagaaggaaactccaaaagtgattaacaaaacaatgatgct |
13949722 |
T |
|
| Q |
387 |
tagtagtatcaac |
399 |
Q |
| |
|
||||||||||||| |
|
|
| T |
13949723 |
tagtagtatcaac |
13949735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 287 - 399
Target Start/End: Original strand, 14090830 - 14090942
Alignment:
| Q |
287 |
tggtgggtttgagtgtagtgttagaatctcaaaaaggtggtggtattagcaatagcaagaagaaggaaactccaaaagtgattaacaaaacaatgatgct |
386 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14090830 |
tggtgggtttaagtgtagtgttagaatctcaaaaaggtggtggtattagcaatagcaagaagaaggaaactccaaaagtgattaacaaaacaatgatgct |
14090929 |
T |
|
| Q |
387 |
tagtagtatcaac |
399 |
Q |
| |
|
||||||||||||| |
|
|
| T |
14090930 |
tagtagtatcaac |
14090942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 55 - 140
Target Start/End: Original strand, 13949377 - 13949462
Alignment:
| Q |
55 |
ctcctatacgtggcgtttatatagcaaaagcagtcaaattactgattgtcctttctttactgcctcaaccatagctgtatgggacc |
140 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13949377 |
ctcctatacgtggcgtttatatagcaaaagcagtcaaattactgattgtcctttctttactgcctcaaccatagctgtatgggacc |
13949462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 55 - 140
Target Start/End: Original strand, 14090584 - 14090669
Alignment:
| Q |
55 |
ctcctatacgtggcgtttatatagcaaaagcagtcaaattactgattgtcctttctttactgcctcaaccatagctgtatgggacc |
140 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14090584 |
ctcctatacgtggcgtttatatagcaaaagcagtcaaattactgattgtcctttctttactgcctcaaccatagctgtatgggacc |
14090669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 230 - 267
Target Start/End: Original strand, 13949552 - 13949589
Alignment:
| Q |
230 |
aaacaatacactttccattcactagtaaccacaaaaaa |
267 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13949552 |
aaacaatacactttccattcactagtaaccacaaaaaa |
13949589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 230 - 267
Target Start/End: Original strand, 14090759 - 14090796
Alignment:
| Q |
230 |
aaacaatacactttccattcactagtaaccacaaaaaa |
267 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14090759 |
aaacaatacactttccattcactagtaaccacaaaaaa |
14090796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University