View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11434_high_7 (Length: 354)
Name: NF11434_high_7
Description: NF11434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11434_high_7 |
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Alignment Details
Target: chr5 (Bit Score: 127; Significance: 2e-65; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 15294618 - 15294456
Alignment:
| Q |
1 |
gtctgtttctctgtttgtactgttgtaacatgtacaggggtgctttaatcagtcgccgaggaatgatcatctgttagagaaccagcttgtggacatcttg |
100 |
Q |
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| T |
15294618 |
gtctgtttctctgtttgtactgttgtaacatgtacaggggtgctttaatcagccgccgaggaatgatcatcagttagagaaccagcttgtggacatcttg |
15294519 |
T |
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| Q |
101 |
gtgttacttcaataactttagtatagtctagaattttatgggaatttcaagctgtgtatttta |
163 |
Q |
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| T |
15294518 |
gtgttactccaattactttcttataggctggaattttatgtgaatttcaagctgtgtatttta |
15294456 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 10 - 155
Target Start/End: Complemental strand, 15301804 - 15301660
Alignment:
| Q |
10 |
tctgtttgtactgttgtaacatgtacaggggtgctttaatcagtcgccgaggaatgatcatctgttagagaaccagcttgtggacatcttggtgttactt |
109 |
Q |
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| T |
15301804 |
tctgtttgtactgttgtaacatgtaaaggggtgctttaatcagtcgccgaggaatgatcatcagttagagaaccagcttgtggacatcttggtgttactt |
15301705 |
T |
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| Q |
110 |
caataactttagtatagtctagaattttatgggaatttcaagctgt |
155 |
Q |
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| T |
15301704 |
caataactttagtatagtctggaattttatgggaa-ttcaagctgt |
15301660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 108
Target Start/End: Complemental strand, 40693841 - 40693746
Alignment:
| Q |
12 |
tgtttgtactgttgtaacatgtacaggggtgctttaatcagtcgccgaggaatgatcatctgttagagaaccagcttgtggacatc-ttggtgttact |
108 |
Q |
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| T |
40693841 |
tgtttgtacacttgtaacatgtacaggggagctttcataagtcgtcgtggaa--atgatcggtttgagaaccagcttgtggacaactttggtgttact |
40693746 |
T |
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