View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11434_low_1 (Length: 731)
Name: NF11434_low_1
Description: NF11434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11434_low_1 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 695; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 695; E-Value: 0
Query Start/End: Original strand, 16 - 714
Target Start/End: Original strand, 3536749 - 3537447
Alignment:
| Q |
16 |
ggcattattggaatgggaaggattggcacagcagttgccaagagagctgaaggttttaattgttcaatatgttactattctagaactcaaaagcaggaac |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3536749 |
ggcattattggaatgggaaggattggcacagcagttgccaagagagctgaaggttttaattgttcaatatgttactattctagaactcaaaagcaggaac |
3536848 |
T |
|
| Q |
116 |
caaaatacaagtactatccaagccttattgagttagcatccaactgcgacatactggttgttgcctgccctcttacagaggaaactcatcacatcatcaa |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3536849 |
caaaatacaagtactatccaagccttattgagttagcatccaactgcgacatactggttgttgcctgccctcttacagaggaaactcatcacatcatcaa |
3536948 |
T |
|
| Q |
216 |
ccgggaggtcattaatgcacttggtccgaagggtgtcctaattaacattggccgaggtaagcatgttgatgagccagagctcgtctctgcattgcttgaa |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3536949 |
ccgggaggtcattaatgcacttggtccgaagggtgtcctaattaacattggccgaggtaagcatgttgatgagccagagctcgtctctgcattgcttgaa |
3537048 |
T |
|
| Q |
316 |
ggtcgtttgggtggtgctggacttgatgtgtatgaaaacgagcctcatgttcccgaagaactatttgggctagaaaatgttgtcttattgcctcatatcg |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
3537049 |
ggtcgtttgggtggtgctggacttgatgtgtatgaaaacgagcctcatgttcccgaagaactatttgggctagaaaatgttgtcttattgcctcatattg |
3537148 |
T |
|
| Q |
416 |
gaagcggcacggtagaaactcgggctgccatggccgaccttcttcttggaaacttggaggctcatttccttggaaagccactgttaactcctttggttta |
515 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3537149 |
gaagcggcacggtagaaactcgggctgccatggccgaccttcttcttggaaacttggaggctcatttccttggaaagccactgttaactcctttggttta |
3537248 |
T |
|
| Q |
516 |
atctgcatgccactattgaactatggacataagattgattggccgttgacctagaaaatctgatggaatggcctccattcagttacatcatcaattagtg |
615 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3537249 |
atctgcatgccactattgaactatggacataagattgattggccgttgacctagaaaatctgatggaatggcctccattcagttacatcatcaattagtg |
3537348 |
T |
|
| Q |
616 |
actcttttgatgtggatttgacgattgtgagagcgtcagatatattgttgcttcaatgattgttgtaaagaataagtgagttcatcttaatcgtgtaac |
714 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3537349 |
actcttttgatgtggatttgacgattgtgagagcgtcagatatattgttgcttcaatgattgttgtaaagaataagtgagttcatcttaatcgtgtaac |
3537447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 16 - 540
Target Start/End: Complemental strand, 3519661 - 3519137
Alignment:
| Q |
16 |
ggcattattggaatgggaaggattggcacagcagttgccaagagagctgaaggttttaattgttcaatatgttactattctagaactcaaaagcaggaac |
115 |
Q |
| |
|
||||||||||| |||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3519661 |
ggcattattgggctgggaaggattggcacagcaattgcgaagagagctgaaggttttaattgttcaatatgttactattctagaactcaaaagcaggaac |
3519562 |
T |
|
| Q |
116 |
caaaatacaagtactatccaagccttattgagttagcatccaactgcgacatactggttgttgcctgccctcttacagaggaaactcatcacatcatcaa |
215 |
Q |
| |
|
||||||||||||||||||||| || |||||||||||||||||||||||||||| || ||||||||| |||||||||| ||||| |||||||||||||| |
|
|
| T |
3519561 |
caaaatacaagtactatccaaatgttgttgagttagcatccaactgcgacatactagtcgttgcctgctctcttacagatgaaacccatcacatcatcaa |
3519462 |
T |
|
| Q |
216 |
ccgggaggtcattaatgcacttggtccgaagggtgtcctaattaacattggccgaggtaagcatgttgatgagccagagctcgtctctgcattgcttgaa |
315 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||| ||||||||||||| || ||||||||||||||||||||||||||||| ||||||||| |||||||| |
|
|
| T |
3519461 |
ccgggaggtcatcaatgcacttggtccgaagggtttcctaattaacatcggtcgaggtaagcatgttgatgagccagagctggtctctgcactgcttgaa |
3519362 |
T |
|
| Q |
316 |
ggtcgtttgggtggtgctggacttgatgtgtatgaaaacgagcctcatgttcccgaagaactatttgggctagaaaatgttgtcttattgcctcatatcg |
415 |
Q |
| |
|
|||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| || |||||||| | | |
|
|
| T |
3519361 |
ggtcgtttgggtggagctggacttgatgtgtttgaaaacgagcctcatgttcccgaagagctatttgggctagaaaatgttgtgttgctgcctcatgttg |
3519262 |
T |
|
| Q |
416 |
gaagcggcacggtagaaactcgggctgccatggccgaccttcttcttggaaacttggaggctcatttccttggaaagccactgttaactcctttggttta |
515 |
Q |
| |
|
|||| ||||||||||||||| | ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
3519261 |
gaagtggcacggtagaaactagaactgccatggccgaccttgttcttggaaacttggaggctcatttccttggaaagccactgttaactcccttggttta |
3519162 |
T |
|
| Q |
516 |
atctgcatgccactattgaactatg |
540 |
Q |
| |
|
|||| |||| | ||||||||||||| |
|
|
| T |
3519161 |
atctacatgactctattgaactatg |
3519137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 16 - 629
Target Start/End: Complemental strand, 3480053 - 3479446
Alignment:
| Q |
16 |
ggcattattggaatgggaaggattggcacagcagttgccaagagagctgaaggttttaattgttcaatatgttactattctagaactcaaaagcaggaac |
115 |
Q |
| |
|
|||||| |||| |||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
3480053 |
ggcattgttgggctgggcaggattggcacagcaattgccaagagagctgaaggttttaattgttcaatatgctactattctagaactcaaaagcaggagt |
3479954 |
T |
|
| Q |
116 |
caaaatacaagtactatccaagccttattgagttagcatccaactgcgacatactggttgttgcctgccctcttacagaggaaactcatcacatcatcaa |
215 |
Q |
| |
|
||||||||||||||||||||| || |||||||||||||||||||||||||||| |||||||||||| | |||||||||||||| |||||||||||||| |
|
|
| T |
3479953 |
caaaatacaagtactatccaaatgttgttgagttagcatccaactgcgacatactagttgttgcctgctcacttacagaggaaacccatcacatcatcaa |
3479854 |
T |
|
| Q |
216 |
ccgggaggtcattaatgcacttggtccgaagggtgtcctaattaacattggccgaggtaagcatgttgatgagccagagctcgtctctgcattgcttgaa |
315 |
Q |
| |
|
|||||||||||| ||||||||||||||||| ||| |||| |||||||| |||||||||||||||||||||||||||||||| ||||||||| | |||||| |
|
|
| T |
3479853 |
ccgggaggtcatcaatgcacttggtccgaaaggtttccttattaacatcggccgaggtaagcatgttgatgagccagagctggtctctgcactccttgaa |
3479754 |
T |
|
| Q |
316 |
ggtcgtttgggtggtgctggacttgatgtgtatgaaaacgagcctcatgttcccgaagaactatttgggctagaaaatgttgtcttattgcctcatatcg |
415 |
Q |
| |
|
|||||||||||||| |||||||| ||||||| ||||||||||||||||||||| ||||| ||| || |||||||||||||||||| ||||||||| | |
|
|
| T |
3479753 |
ggtcgtttgggtggagctggactcgatgtgtttgaaaacgagcctcatgttcctgaagagctactttcgctagaaaatgttgtcttgttgcctcattgtg |
3479654 |
T |
|
| Q |
416 |
gaagcggcacggtagaaactcgggctgccatggccgaccttcttcttggaaacttggaggctcatttccttggaaagccactgttaactcctttggttta |
515 |
Q |
| |
|
|||| |||||| |||||||||| |||||||||| |||||| ||||||||||||||||||| |||||||||||||| |||||||||||||| |||||||| |
|
|
| T |
3479653 |
gaagtggcacgatagaaactcgaactgccatggctgaccttgttcttggaaacttggaggcccatttccttggaaaaccactgttaactcccttggttta |
3479554 |
T |
|
| Q |
516 |
atctgcatgccactattgaactatggacataagattgattggccgttgacctagaaaatctgatggaatggcctccattcagttacatcatcaattagtg |
615 |
Q |
| |
|
|| | |||||| |||||||||||| |||||||||||||| ||| ||||| ||| ||| ||||| |||||||||||| ||||||||||||||| || |
|
|
| T |
3479553 |
atttacatgcctctattgaactatctacataagattgattagccattgacgtag--aatttgatgaaatggcctccat----ttacatcatcaattaatg |
3479460 |
T |
|
| Q |
616 |
actcttttgatgtg |
629 |
Q |
| |
|
| || | ||||||| |
|
|
| T |
3479459 |
attcctgtgatgtg |
3479446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 16 - 580
Target Start/End: Complemental strand, 3523209 - 3522645
Alignment:
| Q |
16 |
ggcattattggaatgggaaggattggcacagcagttgccaagagagctgaaggttttaattgttcaatatgttactattctagaactcaaaagcaggaac |
115 |
Q |
| |
|
||||||||||| |||||||||||||| |||| ||||||||||||||||||| ||||| ||| |||||| |||||||| ||||||||||||||||| |
|
|
| T |
3523209 |
ggcattattgggctgggaaggattggcgcagccattgccaagagagctgaaggctttaactgtccaatatcctactattcgagaactcaaaagcaggagt |
3523110 |
T |
|
| Q |
116 |
caaaatacaagtactatccaagccttattgagttagcatccaactgcgacatactggttgttgcctgccctcttacagaggaaactcatcacatcatcaa |
215 |
Q |
| |
|
|||||||||||||||||||||| || ||||| | ||||||||||| || ||||| |||||||||||||| |||||||||||||| |||||||||||||| |
|
|
| T |
3523109 |
caaaatacaagtactatccaagtgttgttgagcttgcatccaactgtgatatactagttgttgcctgcccccttacagaggaaacccatcacatcatcaa |
3523010 |
T |
|
| Q |
216 |
ccgggaggtcattaatgcacttggtccgaagggtgtcctaattaacattggccgaggtaagcatgttgatgagccagagctcgtctctgcattgcttgaa |
315 |
Q |
| |
|
||||||||||||||| ||||| ||||| |||||| ||||||||||||| || ||||||||||||||||||||||||||||| ||||||||| |||||||| |
|
|
| T |
3523009 |
ccgggaggtcattaacgcactcggtccaaagggtttcctaattaacatcggtcgaggtaagcatgttgatgagccagagctggtctctgcactgcttgaa |
3522910 |
T |
|
| Q |
316 |
ggtcgtttgggtggtgctggacttgatgtgtatgaaaacgagcctcatgttcccgaagaactatttgggctagaaaatgttgtcttattgcctcatatcg |
415 |
Q |
| |
|
|||||||||||||| |||||||||||||||| ||||||||||||||||||||| || || ||||||||||| ||||||||||| | ||||||||| | | |
|
|
| T |
3522909 |
ggtcgtttgggtggagctggacttgatgtgtttgaaaacgagcctcatgttcctgaggagctatttgggcttgaaaatgttgtactgttgcctcatgttg |
3522810 |
T |
|
| Q |
416 |
gaagcggcacggtagaaactcgggctgccatggccgaccttcttcttggaaacttggaggctcatttccttggaaagccactgttaactcctttggttta |
515 |
Q |
| |
|
|||||| |||||| |||||||| |||||||||| |||||| | ||||||||| | ||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
3522809 |
gaagcgccacggttgaaactcgaactgccatggctgaccttgtgcttggaaacctagaggctcatttccttggaaagccactgttaactcccttggttta |
3522710 |
T |
|
| Q |
516 |
atctgcatgccactattgaactatggacataagattgattggccgttgacctagaaaatctgatg |
580 |
Q |
| |
|
| || |||| | ||||||||||||||||||| |||||||||||| |||||| ||||||| ||||| |
|
|
| T |
3522709 |
agcttcatgactctattgaactatggacatatgattgattggccattgacccagaaaatttgatg |
3522645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 597 - 711
Target Start/End: Complemental strand, 3522645 - 3522526
Alignment:
| Q |
597 |
gttacatcatcaattagtgactcttttgatgtggatttgac-gattgtgagagcgtcagatat----attgttgcttcaatgattgttgtaaagaataag |
691 |
Q |
| |
|
|||||||||||||||| || |||| |||| |||| |||| |||||||||||| |||||||| |||| |||||||| ||||||||||||||||| |
|
|
| T |
3522645 |
gttacatcatcaattaaggattcttgtgatatggaattgattgattgtgagagcttcagatatctatattggtgcttcaacaattgttgtaaagaataaa |
3522546 |
T |
|
| Q |
692 |
tgagttcatcttaatcgtgt |
711 |
Q |
| |
|
| | |||||||||||||||| |
|
|
| T |
3522545 |
tcatttcatcttaatcgtgt |
3522526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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