View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11434_low_11 (Length: 334)
Name: NF11434_low_11
Description: NF11434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11434_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 20 - 324
Target Start/End: Complemental strand, 15302102 - 15301801
Alignment:
| Q |
20 |
attcagtatcacatgcatacaagtagagtatgtgagcattgtactgtgatgcatttattatgatttgtggattaatattgtgtcactcataataatgtcg |
119 |
Q |
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| T |
15302102 |
attcagtatcacatgcatacaagtagagtatgtgagcattgtattgtgatgcatttattatgatttgtgtattaatattgtgtcactcataataatgtcg |
15302003 |
T |
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| Q |
120 |
taatgttctagtgatttgagttgttagtgattttgtttggtgttgactgctgaatatttttaacctatttctacctacgacgatatagttgtagttgtgt |
219 |
Q |
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| T |
15302002 |
taatgttctaacgataggagttgtttgtgattttgtttggtgttgactgctgagtatttttaacctatttctacct---acgatatagttgtagttgtgt |
15301906 |
T |
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| Q |
220 |
gatttaagttgttagtggtgctatatggtattgtattgggtgtgtttcatctatttgtatgtaacatgtaatttatttatgatgtactcacctcttctat |
319 |
Q |
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| T |
15301905 |
gatttaagttgttagtggtgctatatggtgttgtgctgggtttgtttcatttatttgtacgtaacatgtaatttatttatgatgcactcacctcttatat |
15301806 |
T |
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| Q |
320 |
ctctg |
324 |
Q |
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|||| |
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| T |
15301805 |
gtctg |
15301801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 243 - 330
Target Start/End: Complemental strand, 15294695 - 15294608
Alignment:
| Q |
243 |
tatggtattgtattgggtgtgtttcatctatttgtatgtaacatgtaatttatttatgatgtactcacctcttctatctctgcttctc |
330 |
Q |
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|||||| ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| |||| ||||| |
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| T |
15294695 |
tatggtgttgtattgggtttgtttcatctatttgtacgtaacatgtaatttatttatgatgtactaacctcttctatgtctgtttctc |
15294608 |
T |
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