View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11434_low_12 (Length: 328)
Name: NF11434_low_12
Description: NF11434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11434_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 322
Target Start/End: Original strand, 34642046 - 34642367
Alignment:
| Q |
1 |
tcatcaaataatgtgtgtcaggagcgatgctccatgacacactttgattccatggatctttcgtcgtatctctatgtttttgagtgaaagtatatctgca |
100 |
Q |
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| T |
34642046 |
tcatcaaataatgtgtgtcatgagcgatgctccatggcacactttgattccatggatctttcatcgcatctctatgtttttgagtgaaagtacatctgca |
34642145 |
T |
|
| Q |
101 |
catataataaagagataaggtggtgaaggatcctcttgacgaagttctctgcccgaattgcacaaactagttccttaaccatttacttgcacattatact |
200 |
Q |
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| T |
34642146 |
catatgataaagagataaggtggtgaaggatcctcttgacgaagtcctttgctcgaatttcacaaactagttccttaaccatttacttgcacattatact |
34642245 |
T |
|
| Q |
201 |
ttacattttccatacaaagcctcgtccaattgatcagtttctcatgaaatctcatctgtctcatcatgtcttttacatgctgccaacttactttatcata |
300 |
Q |
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||||| |||| |||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34642246 |
ttacactttcgatacaaagcctcatccaattgaccagtttctcatgaaatctcatctgtctcatcatgtcttttacatgctgccaacttactttatcata |
34642345 |
T |
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| Q |
301 |
agctttgttgatgtgtaccttt |
322 |
Q |
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| T |
34642346 |
agctttgttgatgtgtaccttt |
34642367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 11 - 54
Target Start/End: Complemental strand, 37167068 - 37167025
Alignment:
| Q |
11 |
atgtgtgtcaggagcgatgctccatgacacactttgattccatg |
54 |
Q |
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| T |
37167068 |
atgtgtgtaaggagcgatgctccatgacacactttgataccatg |
37167025 |
T |
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