View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11434_low_13 (Length: 280)
Name: NF11434_low_13
Description: NF11434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11434_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 79; Significance: 5e-37; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 16 - 102
Target Start/End: Original strand, 25432107 - 25432193
Alignment:
| Q |
16 |
atatcgacggtgggcacccattataaatcatttgcaagaagctgtggaaatggctgattggtgaagcaagtcaactcttcaaaatgt |
102 |
Q |
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| T |
25432107 |
atatcgacggtgggcacccgttataaatcatttgcaagaagctgtggaaatggctgattggtgaagcaagtcaactcatcaaaatgt |
25432193 |
T |
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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 204 - 252
Target Start/End: Complemental strand, 30159032 - 30158984
Alignment:
| Q |
204 |
ttcaaatttagggttgtgatgatagtttgtcatatcatatttttagagt |
252 |
Q |
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| T |
30159032 |
ttcaagtttggggttgtgatgatagtccgtcatatcacatttttagagt |
30158984 |
T |
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Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 152 - 250
Target Start/End: Complemental strand, 21836608 - 21836510
Alignment:
| Q |
152 |
ttttactgtcattttttatttaacaagtctgctcctatagaataagtaacatttcaaatttagggttgtgatgatagtttgtcatatcatatttttaga |
250 |
Q |
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| T |
21836608 |
ttttagtgtcatttttcatttaacaagtttgttccttaaggataagtaacaattcaagtttgggattgtgatgacattctgtcatatcacatttttaga |
21836510 |
T |
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Target: chr6 (Bit Score: 37; Significance: 0.000000000006; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 164 - 248
Target Start/End: Original strand, 2770976 - 2771060
Alignment:
| Q |
164 |
tttttatttaacaagtctgctcctatagaataagtaacatttcaaatttagggttgtgatgatagtttgtcatatcatattttta |
248 |
Q |
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| T |
2770976 |
tttttatttaacaagtttgttcctttaggacgagtaatagttcaagtttaaggttgtgatgacagtctgtcatatcatattttta |
2771060 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 225
Target Start/End: Complemental strand, 12981261 - 12981183
Alignment:
| Q |
147 |
tgttgttttactgtcattttttatttaacaagtctgctcctatagaataagtaacatttcaaatttagggttgtgatga |
225 |
Q |
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| T |
12981261 |
tgttattttactgtcatttttcatttaacaagtttgttccttgaggacaagtaacattttaagtctggggttgtgatga |
12981183 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 219 - 263
Target Start/End: Complemental strand, 5619220 - 5619176
Alignment:
| Q |
219 |
gtgatgatagtttgtcatatcatatttttagagtatatttaatta |
263 |
Q |
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| T |
5619220 |
gtgatgacagtccgtcatatcatatttttagagtatttttaatta |
5619176 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 225
Target Start/End: Complemental strand, 22454392 - 22454314
Alignment:
| Q |
147 |
tgttgttttactgtcattttttatttaacaagtctgctcctatagaataagtaacatttcaaatttagggttgtgatga |
225 |
Q |
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| T |
22454392 |
tgttattttactgtcatttttcatttaacaagtttgttccttgaggtcaagtaacatttcaagtttgcggttgtgatga |
22454314 |
T |
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Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 147 - 263
Target Start/End: Complemental strand, 22090831 - 22090715
Alignment:
| Q |
147 |
tgttgttttactgtcattttttatttaacaagtctgctcctatagaataagtaacatttcaaatttagggttgtgatgatagtttgtcatatcatatttt |
246 |
Q |
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| T |
22090831 |
tgttattttactgtcattttttattaatcaagtttgtttcttgaggacaagcaacaattcaagtttgggattgtgatgacaatccgtcatatcatatttc |
22090732 |
T |
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| Q |
247 |
tagagtatatttaatta |
263 |
Q |
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| T |
22090731 |
tagagtctttttaatta |
22090715 |
T |
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