View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11434_low_2 (Length: 614)
Name: NF11434_low_2
Description: NF11434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11434_low_2 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 589; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 589; E-Value: 0
Query Start/End: Original strand, 1 - 601
Target Start/End: Complemental strand, 22513106 - 22512506
Alignment:
| Q |
1 |
gctggttaataatgcttcagttctcaagcaacattatgaaaagaaacgtaatgagttggaacatgagaagttgttcatgctagactatcatgatttatgc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
22513106 |
gctggttaataatgcttcagttctcaagcaacattatgaaaagaaacgtaatgagttggaacatgagaagttgttcatgctagactatcatgatctatgc |
22513007 |
T |
|
| Q |
101 |
ttgccatatgtaagcaaagtgagaaagagtgagggtgcaacactatatggatcaaggtcactatccttcctcactagtgacggcattttgaagccaccag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22513006 |
ttgccatatgtaagcaaagtgagaaagagtgagggtgcaacactatatggatcaaggtcactatccttcctcactagtgacggcattttgaagccaccag |
22512907 |
T |
|
| Q |
201 |
atattgagctcactagaccacctattaatagcaaggcacaatggaagcaagtcttcacacctgattctgattcctcctattggctaaaaactcattgtgt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22512906 |
atattgagctcactagaccacctattaatagcaaggcacaatggaagcaagtcttcacacctgattctgattcctcctattggctaaaaactcattgtgt |
22512807 |
T |
|
| Q |
301 |
tgtcgaacctattataattgccacgcatagacaactcagttccatgcatctaatttttagattattgcatccacatctgaggtataccatggagatcaat |
400 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22512806 |
tgtcgaacctattataattgccatgcatagacaactcagttccatgcatctaatttttagattattgcatccacatctgaggtataccatggagatcaat |
22512707 |
T |
|
| Q |
401 |
aaagcacttagaaatgatcttatcaacagaggaatggttgtggaagatcctaatgcacaacatggagtgaagttaataattgaagactatcctcttgtca |
500 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22512706 |
aaagcacttagaaatgatcttatcaatagaggaatggttgtggaagatcctaatgcacaacatggagtgaagttaataattgaagactatcctcttgtca |
22512607 |
T |
|
| Q |
501 |
atgatggtcttcaaatatgggatgcaattaaacaatgggatcctggtaaatcaattcaatggcataaaggcaattactatatttttcaaaccaagtcatc |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22512606 |
atgatggtcttcaaatatgggatgcaattaaacaatgggatcctggtaaatcaattcaatggcataaaggcaattactatatttttcaaaccaagtcatc |
22512507 |
T |
|
| Q |
601 |
t |
601 |
Q |
| |
|
| |
|
|
| T |
22512506 |
t |
22512506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 125; Significance: 4e-64; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 66 - 274
Target Start/End: Original strand, 35723502 - 35723710
Alignment:
| Q |
66 |
agaagttgttcatgctagactatcatgatttatgcttgccatatgtaagcaaagtgagaaagagtgagggtgcaacactatatggatcaaggtcactatc |
165 |
Q |
| |
|
||||||||||||||||||||||||||||||| | ||| ||||||||||||||||||||| ||| |||||| ||||| | ||||||||||| |||||| |
|
|
| T |
35723502 |
agaagttgttcatgctagactatcatgatttttacttaccatatgtaagcaaagtgagagagattgagggaacaacattgtatggatcaagaacactatt |
35723601 |
T |
|
| Q |
166 |
cttcctcactagtgacggcattttgaagccaccagatattgagctcactagaccacctattaatagcaaggcacaatggaagcaagtcttcacacctgat |
265 |
Q |
| |
|
||||||||||||||| |||||||||||||||| || ||||||||| ||||||||||||||| || ||||| |||| ||||||||||||||||||||| || |
|
|
| T |
35723602 |
cttcctcactagtgaaggcattttgaagccactagctattgagcttactagaccacctattgatggcaagtcacagtggaagcaagtcttcacacctaat |
35723701 |
T |
|
| Q |
266 |
tctgattcc |
274 |
Q |
| |
|
||||||||| |
|
|
| T |
35723702 |
tctgattcc |
35723710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 66 - 271
Target Start/End: Original strand, 35707539 - 35707744
Alignment:
| Q |
66 |
agaagttgttcatgctagactatcatgatttatgcttgccatatgtaagcaaagtgagaaagagtgagggtgcaacactatatggatcaaggtcactatc |
165 |
Q |
| |
|
||||||||||||||||||||||| ||||||| | | | ||||||||||||||||||||||||| |||||| ||||||||||||||||||| |||||| |
|
|
| T |
35707539 |
agaagttgttcatgctagactattatgatttctacataccatatgtaagcaaagtgagaaagattgagggaacaacactatatggatcaagaacactatt |
35707638 |
T |
|
| Q |
166 |
cttcctcactagtgacggcattttgaagccaccagatattgagctcactagaccacctattaatagcaaggcacaatggaagcaagtcttcacacctgat |
265 |
Q |
| |
|
|||||| |||| ||| || || |||||||||| || ||||||||||||||||||||||||| || | |||||||||||||||||||| ||||||||| | |
|
|
| T |
35707639 |
cttccttactactgaaggaatattgaagccactagctattgagctcactagaccacctattgatggaaaggcacaatggaagcaagttttcacacctagt |
35707738 |
T |
|
| Q |
266 |
tctgat |
271 |
Q |
| |
|
|||||| |
|
|
| T |
35707739 |
tctgat |
35707744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 282 - 404
Target Start/End: Original strand, 35707913 - 35708035
Alignment:
| Q |
282 |
ggctaaaaactcattgtgttgtcgaacctattataattgccacgcatagacaactcagttccatgcatctaatttttagattattgcatccacatctgag |
381 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||| || || |||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
35707913 |
ggctaagaactcattgtgttgtcgaacctattataattgcaacacacagacaactcagttccatgcatccaatttttagattattgcatccacatctgag |
35708012 |
T |
|
| Q |
382 |
gtataccatggagatcaataaag |
404 |
Q |
| |
|
||||||||||| |||||||||| |
|
|
| T |
35708013 |
atataccatggaaatcaataaag |
35708035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 428 - 539
Target Start/End: Original strand, 35724382 - 35724493
Alignment:
| Q |
428 |
agaggaatggttgtggaagatcctaatgcacaacatggagtgaagttaataattgaagactatcctcttgtcaatgatggtcttcaaatatgggatgcaa |
527 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| ||| ||| |||||||||||||| |||||||||||||| |
|
|
| T |
35724382 |
agaggaatggctgtggaagatcctaatgcacaacatggagtgaagctaataattgaagactacccttttgccaatgatggtcttctaatatgggatgcaa |
35724481 |
T |
|
| Q |
528 |
ttaaacaatggg |
539 |
Q |
| |
|
|||||||||||| |
|
|
| T |
35724482 |
ttaaacaatggg |
35724493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 282 - 404
Target Start/End: Original strand, 35723873 - 35723995
Alignment:
| Q |
282 |
ggctaaaaactcattgtgttgtcgaacctattataattgccacgcatagacaactcagttccatgcatctaatttttagattattgcatccacatctgag |
381 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||| || || ||||||||||||||||| |||| ||| |||||||||||||||||||||||||| |
|
|
| T |
35723873 |
ggctaagaactcattgtgttgtcgaacctattataattgcaacacacagacaactcagttccatacatccaatatttagattattgcatccacatctgag |
35723972 |
T |
|
| Q |
382 |
gtataccatggagatcaataaag |
404 |
Q |
| |
|
||||||||||| |||||||||| |
|
|
| T |
35723973 |
atataccatggaaatcaataaag |
35723995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 428 - 539
Target Start/End: Complemental strand, 35726345 - 35726234
Alignment:
| Q |
428 |
agaggaatggttgtggaagatcctaatgcacaacatggagtgaagttaataattgaagactatcctcttgtcaatgatggtcttcaaatatgggatgcaa |
527 |
Q |
| |
|
|||||||||| |||||||||||||| ||||||||||||| | ||| || |||||||||||| ||| ||| |||||||||||||| ||||||||||||| |
|
|
| T |
35726345 |
agaggaatggctgtggaagatcctagtgcacaacatggactaaagctagcaattgaagactacccttttgccaatgatggtcttctcatatgggatgcaa |
35726246 |
T |
|
| Q |
528 |
ttaaacaatggg |
539 |
Q |
| |
|
| |||||||||| |
|
|
| T |
35726245 |
tcaaacaatggg |
35726234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 428 - 539
Target Start/End: Original strand, 35708479 - 35708590
Alignment:
| Q |
428 |
agaggaatggttgtggaagatcctaatgcacaacatggagtgaagttaataattgaagactatcctcttgtcaatgatggtcttcaaatatgggatgcaa |
527 |
Q |
| |
|
|||||||||| |||| |||||| || ||||||||||||| | ||| || |||||||||||| ||| ||| |||||||||||||| |||||||||||||| |
|
|
| T |
35708479 |
agaggaatggctgtgaaagatcatagtgcacaacatggactaaagctagcaattgaagactacccttttgccaatgatggtcttctaatatgggatgcaa |
35708578 |
T |
|
| Q |
528 |
ttaaacaatggg |
539 |
Q |
| |
|
| |||||||||| |
|
|
| T |
35708579 |
tcaaacaatggg |
35708590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 66; Significance: 7e-29; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 27959215 - 27959284
Alignment:
| Q |
1 |
gctggttaataatgcttcagttctcaagcaacattatgaaaagaaacgtaatgagttggaacatgagaag |
70 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
27959215 |
gctggttaataatgcttcagttctcaagcaacattatgaaaagaaacttaatgagttggaacatgagaag |
27959284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 428 - 466
Target Start/End: Complemental strand, 3365616 - 3365578
Alignment:
| Q |
428 |
agaggaatggttgtggaagatcctaatgcacaacatgga |
466 |
Q |
| |
|
|||||||||| |||||||||||||| ||||||||||||| |
|
|
| T |
3365616 |
agaggaatggctgtggaagatcctagtgcacaacatgga |
3365578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 428 - 466
Target Start/End: Original strand, 16721733 - 16721771
Alignment:
| Q |
428 |
agaggaatggttgtggaagatcctaatgcacaacatgga |
466 |
Q |
| |
|
|||||||||| |||||||||||||| ||||||||||||| |
|
|
| T |
16721733 |
agaggaatggctgtggaagatcctagtgcacaacatgga |
16721771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University