View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11434_low_3 (Length: 571)
Name: NF11434_low_3
Description: NF11434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11434_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 188; Significance: 1e-101; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 334 - 554
Target Start/End: Complemental strand, 37118028 - 37117812
Alignment:
| Q |
334 |
aaagtttaatataatctttctttgtatatgtcaatgccactagtttctttaacaacttttaactactttagatatactttctaactaaataaccaaccaa |
433 |
Q |
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| T |
37118028 |
aaagtttaatataatctttctctgtatatgccaatgccactagtttctttaacaacttttaactactttagatatactttctaactaa----ccaaccaa |
37117933 |
T |
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| Q |
434 |
ctaactaattgctttaacaattgataactactctaattctcccccttctctataccctaacaatcattcatttaacctattcattatgatactaatctct |
533 |
Q |
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| T |
37117932 |
ctaactaattgctttagcaattgataactactctaattctcccccttctctataccctaacaatcattcatttaacctattcatgatgatactaatctct |
37117833 |
T |
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| Q |
534 |
cacactcttctaataattttt |
554 |
Q |
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||||||||||||||||||||| |
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| T |
37117832 |
cacactcttctaataattttt |
37117812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 133; E-Value: 7e-69
Query Start/End: Original strand, 15 - 218
Target Start/End: Complemental strand, 37118426 - 37118227
Alignment:
| Q |
15 |
gacatcaacgggacacaccacctgaccactgttttcatatagactttcaatataaggagtcaatcactttaaattaaacccttaactctaatactattat |
114 |
Q |
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| T |
37118426 |
gacattaacgggacacaccatctgaccactgttttcatgtagattttcaatataaggagtcaatcactttaaattaaacccttaactctaatactattat |
37118327 |
T |
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| Q |
115 |
tggatctttagggaaacctta-aatacaaagagacatcacattagattaaaagtaaccatttaaatgaattagatatcaaaccttcatctaaaatcttaa |
213 |
Q |
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| T |
37118326 |
tggatctttaggggaaccctacaatacaaggggacatcacattaggttaaaa-----cattcaaatgaattagatatcaaaccttcatccaaaatcttaa |
37118232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 238 - 336
Target Start/End: Complemental strand, 37118188 - 37118096
Alignment:
| Q |
238 |
ggatcttttgacttaagatgtttttcatcatctactttttcaacgtgagattcaaactcacaccaaaaactaaaaacacctatattgagaaaatataaa |
336 |
Q |
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|||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37118188 |
ggatcttttgacttaagatg------atcatctattttttcaacgtgagattcaaactcacaccaaaaactaaaaacacctatattgagaaaatataaa |
37118096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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