View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11434_low_4 (Length: 517)
Name: NF11434_low_4
Description: NF11434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11434_low_4 |
 | |
|
| [»] chr6 (2 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 489; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 489; E-Value: 0
Query Start/End: Original strand, 1 - 517
Target Start/End: Complemental strand, 23333288 - 23332772
Alignment:
| Q |
1 |
aaccaacgtaaattttgcagcattaattaactcaaaaaggtttgcgttgaaaatagatgtttgttcttctctattttgctggccacatgttgttttgaat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23333288 |
aaccaacgtaaattttgcagcattaattaactcaaaaaggtttgcgtggaaaatagatgtttgttcttctctattttgctggccacatgttgttttgaat |
23333189 |
T |
|
| Q |
101 |
attaggcgatggttttaatttggctacttttggaatgtaatgctacgaagacttatttgtttcttggtgcattttctgaaagttatacaatacttacgct |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23333188 |
attaggcgatggttttaatttggctacttttggaaagtaatgctatgaagacttatttgtttcttggtgcattttctgaaagttatacaatacttacgct |
23333089 |
T |
|
| Q |
201 |
gatatttcttggttgtcaagttaggatcaagactgtcaattatcattcatgctatgtagttagtcggttcattagtgggcattgcactgttttggtatgt |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
23333088 |
gatatttcttggttgtcaagttaggatcaagactgtcaattatcattcatgctatgtagttagtcggttcatttgtgggcattgcactgttttggtatgt |
23332989 |
T |
|
| Q |
301 |
tgattggaactaaccgtgtcatgtgtttgatgtgttggtcagccgaagacaaggttgccatcgtgtttcgccaaggaatatggtgtgcatgttgatgatt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
23332988 |
tgattggaactaaccgtgtcatgtgtttgatgtgttggtcagccgaagacaaggttgccatcgtgtttcgccaaggaatatggtttgcatgttgatgatt |
23332889 |
T |
|
| Q |
401 |
atgtcatgttgcgtgatccaaacagaaacatgttcgaggtcaaggtccacgtgaaaaatggcaaggtctatctgcgggatggttgggctgagctgaaggg |
500 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
23332888 |
atgtcatgttgcgtgatccaaacagaaacatgttcaaggtcaaggtccacgtgaaaaatggcaaggtttatctgcgggatggttgggctgagctgaaggg |
23332789 |
T |
|
| Q |
501 |
tttctataaggtagatc |
517 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
23332788 |
tttctataaggtagatc |
23332772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 373 - 467
Target Start/End: Original strand, 10955074 - 10955166
Alignment:
| Q |
373 |
aaggaatatggtgtgcatgttgatgattatgtcatgttgcgtgatccaaacagaaacatgttcgaggtcaaggtccacgtgaaaaatggcaaggt |
467 |
Q |
| |
|
|||||||||||| |||| |||||||| |||||||| |||||||||| |||| |||||||||||||| ||||||||| ||| || |||||||| |
|
|
| T |
10955074 |
aaggaatatggtttgcacgttgatgactatgtcat--tgcgtgatcctaacaagaacatgttcgaggttaaggtccacaagaagaagggcaaggt |
10955166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 400 - 467
Target Start/End: Complemental strand, 2027759 - 2027692
Alignment:
| Q |
400 |
tatgtcatgttgcgtgatccaaacagaaacatgttcgaggtcaaggtccacgtgaaaaatggcaaggt |
467 |
Q |
| |
|
|||||||| |||||||||||||||| |||||||| ||||| || || ||| ||||||||||||||| |
|
|
| T |
2027759 |
tatgtcattttgcgtgatccaaacaagaacatgtttgaggttaaagttcacaagaaaaatggcaaggt |
2027692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University