View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11434_low_5 (Length: 454)
Name: NF11434_low_5
Description: NF11434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11434_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 333; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 13 - 373
Target Start/End: Complemental strand, 41077189 - 41076829
Alignment:
| Q |
13 |
acatcaatccatctctttttgcattgtgatgtggtttgtaaggtgtggttaagggtgatgaggtggtttgaggtctctatgctcactccaccaaatttat |
112 |
Q |
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| T |
41077189 |
acatcaatccatctctttttgcattgtgatgtggtttgtaaggtgtggttaagggtgatgaggtggtttgaggtctctatgcttactccaccaaatttat |
41077090 |
T |
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| Q |
113 |
ttatccatttaaatggttggacatatgcagtgcgcggtaaaaaccttagacatggtgcgtggatcatttgacatgcaactatttgggtggtttggaagat |
212 |
Q |
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| T |
41077089 |
ttatccatttaaatggttggacaaatgcagtgcgcggtaaaaaccttagacgtggtgcatggatcatttggcatgcaactatttgggtggtttgaaagat |
41076990 |
T |
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| Q |
213 |
gaggaatgataggatattcaataataaggtggtggagattgatgagatggtggatcaattcaaagtgttgtctttgcaatggagtatgaataggttgaaa |
312 |
Q |
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| T |
41076989 |
gaggaatgataggatattcaataataatgtggtggagattgatgagatggtggatcaattcaaagtgttgtctttgcaatggagtatgaataggttgaaa |
41076890 |
T |
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| Q |
313 |
attccaactagtctattttatgaatggtgttggaacccaagagaatgtctcgttagattac |
373 |
Q |
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| T |
41076889 |
attccaactagtctattttatgaatggtgttggaacccaagagaatgtctcgttagattac |
41076829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 288 - 350
Target Start/End: Original strand, 15623306 - 15623368
Alignment:
| Q |
288 |
gcaatggagtatgaataggttgaaaattccaactagtctattttatgaatggtgttggaaccc |
350 |
Q |
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| T |
15623306 |
gcaatggagtatgtgtaggttgaaaattcccacgtgtctgttttatgagtggtgttggaaccc |
15623368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 288 - 350
Target Start/End: Original strand, 15647095 - 15647157
Alignment:
| Q |
288 |
gcaatggagtatgaataggttgaaaattccaactagtctattttatgaatggtgttggaaccc |
350 |
Q |
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| T |
15647095 |
gcaatggagtatgtgtaggttgaaaattcccacgtgtctgttttatgagtggtgttggaaccc |
15647157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 277 - 347
Target Start/End: Complemental strand, 8216113 - 8216043
Alignment:
| Q |
277 |
gtgttgtctttgcaatggagtatgaataggttgaaaattccaactagtctattttatgaatggtgttggaa |
347 |
Q |
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| T |
8216113 |
gtgttgtcttgccaatggagtttgaataggttgaagaatccaacttgtttgttttatgaatggtgttggaa |
8216043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 272 - 356
Target Start/End: Original strand, 25355654 - 25355738
Alignment:
| Q |
272 |
tcaaagtgttgtctttgcaatggagtatgaataggttgaaaattccaactagtctattttatgaatggtgttggaacccaagaga |
356 |
Q |
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| T |
25355654 |
tcaaggtgttttcttaacaatggagtttgaataggttgaaaatttcaacttgtttgtactatgaatggtgttggaatcctagaga |
25355738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 203 - 349
Target Start/End: Original strand, 16256764 - 16256910
Alignment:
| Q |
203 |
tttggaagatgaggaatgataggatattcaataataaggtg-gtggagattgatgagatggtggatcaattcaaagtgttgtctttgcaatggagtatga |
301 |
Q |
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| T |
16256764 |
tttggaagatgagaaatgatagggtttttaataacaaagtttgtgggg-ttgatgaaatggtggatcaagtcaaggtgatctcttagcattggtatatga |
16256862 |
T |
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| Q |
302 |
ataggttgaaaattccaactagtctattttatgaatggtgttggaacc |
349 |
Q |
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| T |
16256863 |
atagaatgaaaattgcaacttgtttgttttataagtggtgttggaacc |
16256910 |
T |
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