View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11434_low_7 (Length: 422)
Name: NF11434_low_7
Description: NF11434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11434_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 388; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 1 - 411
Target Start/End: Complemental strand, 2875166 - 2874758
Alignment:
| Q |
1 |
tcaatcactgtttctttgtgcatatgggttcgcagaaaaagtgtcatagtaattgttgccattatagaaacctaaatatcatagagagagagaagaaaat |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
2875166 |
tcaatcactgtttctttgtgcatatgggttcgcagaaaaagtgtcatagtaattgttgccattatagaaacctaaatatcatagagagaga--agaaaat |
2875069 |
T |
|
| Q |
101 |
aaaaaagttgaaaccatgcatgcatgttaaacaaaaagcagatattatagaaataaagctagaactcacttgaaccatcttaaagaggtaaatgaatgag |
200 |
Q |
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|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2875068 |
gaaaaagttgaaaccatgcatgcatgttaaacaaaaagtagatattatagaaataaagctagaactcacttgaaccatcttaaagaggtaaatgaatgaa |
2874969 |
T |
|
| Q |
201 |
tttcttttcataagcaaaaactctcttgagatgttagcctttaatagttccttcttgttaacaccatactttttagttgttaatgctgctggatgattat |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2874968 |
tttcttttcataagcaaaaactctcttgagatgttagcctttaatagttccttcttgttaacaccatactttttagttgttaatgctgctggatgattat |
2874869 |
T |
|
| Q |
301 |
ttgacttgtcaaatggaatttcaagctcttctttgatcgtcttcccaacatggaacgacttgaatgcctctgcaaattgagtaactgttacaaacctata |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2874868 |
ttgacttgtcaaatggaatttcaagctcttctttgatcgtcttcccaacatggaacgacttgaatgcctctgcaaattgagtaactgttacaaacctata |
2874769 |
T |
|
| Q |
401 |
tggttcatctc |
411 |
Q |
| |
|
||||||||||| |
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|
| T |
2874768 |
tggttcatctc |
2874758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 201 - 405
Target Start/End: Complemental strand, 2884836 - 2884632
Alignment:
| Q |
201 |
tttcttttcataagcaaaaactctcttgagatgttagcctttaatagttccttcttgttaacaccatactttttagttgttaatgctgctggatgattat |
300 |
Q |
| |
|
|||||||||||||||||| |||||||||||| |||||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||| | |
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|
| T |
2884836 |
tttcttttcataagcaaatactctcttgagaagttagcctttaacagttctttcttgttaacaccgtactttttagttgttaatgctgctggatgattct |
2884737 |
T |
|
| Q |
301 |
ttgacttgtcaaatggaatttcaagctcttctttgatcgtcttcccaacatggaacgacttgaatgcctctgcaaattgagtaactgttacaaacctata |
400 |
Q |
| |
|
| |||||||||||||||||| ||||||| ||| | || | ||||||||| | || | |||||||| |||||||||||||| ||||||||||| || |
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| T |
2884736 |
tagacttgtcaaatggaattgcaagctcatctcctgttttccttccaacatggtatgattgaaatgcctcagcaaattgagtaacagttacaaacctgta |
2884637 |
T |
|
| Q |
401 |
tggtt |
405 |
Q |
| |
|
||||| |
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|
| T |
2884636 |
tggtt |
2884632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 204 - 405
Target Start/End: Original strand, 2899727 - 2899928
Alignment:
| Q |
204 |
cttttcataagcaaaaactctcttgagatgttagcctttaatagttccttcttgttaacaccatactttttagttgttaatgctgctggatgattatttg |
303 |
Q |
| |
|
||||||||||||||| | |||||||||| |||||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||| || | |
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|
| T |
2899727 |
cttttcataagcaaatattctcttgagaagttagcctttaacagttctttcttgttaacaccgtactttttagttgttaatgctgctggatgattcttag |
2899826 |
T |
|
| Q |
304 |
acttgtcaaatggaatttcaagctcttctttgatcgtcttcccaacatggaacgacttgaatgcctctgcaaattgagtaactgttacaaacctatatgg |
403 |
Q |
| |
|
||||||||||||||||| ||||||| ||| | | || | ||||||||| | || | |||||||| |||||||||||||| |||| |||||| ||||| |
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| T |
2899827 |
acttgtcaaatggaattgcaagctcatctcttgttttccttccaacatggtatgattgaaatgcctcagcaaattgagtaacagttaaaaacctgtatgg |
2899926 |
T |
|
| Q |
404 |
tt |
405 |
Q |
| |
|
|| |
|
|
| T |
2899927 |
tt |
2899928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 201 - 316
Target Start/End: Original strand, 44235908 - 44236023
Alignment:
| Q |
201 |
tttcttttcataagcaaaaactctcttgagatgttagcctttaatagttccttcttgttaacaccatactttttagttgttaatgctgctggatgattat |
300 |
Q |
| |
|
||||||||||| |||||| |||||||||||| |||||||||||| || ||| ||||||| | |||||||| ||| || || || || |||||||| | | |
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|
| T |
44235908 |
tttcttttcatgagcaaatactctcttgagaagttagcctttaaaagctccgtcttgttgagaccatactctttggtggtcaaagcagctggatggctct |
44236007 |
T |
|
| Q |
301 |
ttgacttgtcaaatgg |
316 |
Q |
| |
|
| | |||||||||||| |
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|
| T |
44236008 |
tcgtcttgtcaaatgg |
44236023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 204 - 316
Target Start/End: Original strand, 44212936 - 44213048
Alignment:
| Q |
204 |
cttttcataagcaaaaactctcttgagatgttagcctttaatagttccttcttgttaacaccatactttttagttgttaatgctgctggatgattatttg |
303 |
Q |
| |
|
|||||||| |||||| |||||||||||| |||||||||||| || ||| ||||||| | |||||||| ||| || || || || |||||||| | || | |
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|
| T |
44212936 |
cttttcatgagcaaatactctcttgagaagttagcctttaaaagctccgtcttgttgagaccatactctttggtggtcaaagcagctggatggctcttcg |
44213035 |
T |
|
| Q |
304 |
acttgtcaaatgg |
316 |
Q |
| |
|
|||||||||||| |
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|
| T |
44213036 |
tcttgtcaaatgg |
44213048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 204 - 316
Target Start/End: Original strand, 44225097 - 44225209
Alignment:
| Q |
204 |
cttttcataagcaaaaactctcttgagatgttagcctttaatagttccttcttgttaacaccatactttttagttgttaatgctgctggatgattatttg |
303 |
Q |
| |
|
|||||||| |||||| |||||||||||| |||||||||||| || ||| ||||||| | |||||||| ||| || || || || |||||||| | || | |
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|
| T |
44225097 |
cttttcatgagcaaatactctcttgagaagttagcctttaaaagctccgtcttgttgagaccatactctttggtggtcaaagcagctggatggctcttcg |
44225196 |
T |
|
| Q |
304 |
acttgtcaaatgg |
316 |
Q |
| |
|
|||||||||||| |
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|
| T |
44225197 |
tcttgtcaaatgg |
44225209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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