View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11434_low_8 (Length: 417)

Name: NF11434_low_8
Description: NF11434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11434_low_8
NF11434_low_8
[»] chr2 (6 HSPs)
chr2 (287-399)||(13949623-13949735)
chr2 (287-399)||(14090830-14090942)
chr2 (55-140)||(13949377-13949462)
chr2 (55-140)||(14090584-14090669)
chr2 (230-267)||(13949552-13949589)
chr2 (230-267)||(14090759-14090796)


Alignment Details
Target: chr2 (Bit Score: 109; Significance: 1e-54; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 287 - 399
Target Start/End: Original strand, 13949623 - 13949735
Alignment:
Q  287 tggtgggtttgagtgtagtgttagaatctcaaaaaggtggtggtattagcaatagcaagaagaaggaaactccaaaagtgattaacaaaacaatgatgct 386  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13949623 tggtgggtttaagtgtagtgttagaatctcaaaaaggtggtggtattagcaatagcaagaagaaggaaactccaaaagtgattaacaaaacaatgatgct 13949722  T
Q  387 tagtagtatcaac 399  Q
    |||||||||||||    
T  13949723 tagtagtatcaac 13949735  T

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Target: chr2; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 287 - 399
Target Start/End: Original strand, 14090830 - 14090942
Alignment:
Q  287 tggtgggtttgagtgtagtgttagaatctcaaaaaggtggtggtattagcaatagcaagaagaaggaaactccaaaagtgattaacaaaacaatgatgct 386  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14090830 tggtgggtttaagtgtagtgttagaatctcaaaaaggtggtggtattagcaatagcaagaagaaggaaactccaaaagtgattaacaaaacaatgatgct 14090929  T
Q  387 tagtagtatcaac 399  Q
    |||||||||||||    
T  14090930 tagtagtatcaac 14090942  T

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Target: chr2; HSP #3
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 55 - 140
Target Start/End: Original strand, 13949377 - 13949462
Alignment:
Q  55 ctcctatacgtggcgtttatatagcaaaagcagtcaaattactgattgtcctttctttactgcctcaaccatagctgtatgggacc 140  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13949377 ctcctatacgtggcgtttatatagcaaaagcagtcaaattactgattgtcctttctttactgcctcaaccatagctgtatgggacc 13949462  T

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Target: chr2; HSP #4
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 55 - 140
Target Start/End: Original strand, 14090584 - 14090669
Alignment:
Q  55 ctcctatacgtggcgtttatatagcaaaagcagtcaaattactgattgtcctttctttactgcctcaaccatagctgtatgggacc 140  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14090584 ctcctatacgtggcgtttatatagcaaaagcagtcaaattactgattgtcctttctttactgcctcaaccatagctgtatgggacc 14090669  T

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Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 230 - 267
Target Start/End: Original strand, 13949552 - 13949589
Alignment:
Q  230 aaacaatacactttccattcactagtaaccacaaaaaa 267  Q
    ||||||||||||||||||||||||||||||||||||||    
T  13949552 aaacaatacactttccattcactagtaaccacaaaaaa 13949589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 230 - 267
Target Start/End: Original strand, 14090759 - 14090796
Alignment:
Q  230 aaacaatacactttccattcactagtaaccacaaaaaa 267  Q
    ||||||||||||||||||||||||||||||||||||||    
T  14090759 aaacaatacactttccattcactagtaaccacaaaaaa 14090796  T

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